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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0149500 |
| Transcript ID | LotjaGi5g1v0149500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G20180.2 phytochrome interacting factor 3-like 5; Swiss-Prot: sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1; TrEMBL-Plants: tr|A0A072VK93|A0A072VK93_MEDTR Transcription factor; Found in the gene: LotjaGi5g1v0149500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:38820081..38823156) extracted from Lotus japonicus Gifu genome v1.2.
ATCACCTCTACCTTAACCTTGTGGTTGGAAATAATGAATATTGAATAAGAGTGTGAATTGATGCAAACCGTCAAAATCCC TTTTCGTCCTTTATTCTCGACTCCTTATCTTTGCTCTGCTCTGCTCGAGAGGCAAGCAACAACCACAACTGCTCCGGCAA CCATTAACAACCATGCTCAACTAGCTAGCTCTGATAACAGTAAGTGCTCCTCTTTTGCATCTTCAGTTGCTATTTGCTAT TCCAATTCCTCTCTTCTGTAATCTGAATTTTTGTTCTTATCACTGATACTGAACAGAGCAAAAATGAATCACTGTGTTCC AGATTTCGAAATCCGAATCCACAACGAAGAAGAGTACCCAATACACATCTCAAAGAAACCCTCCATGCAAAACGACGAGA TCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAAAACCAACGGCCACCGTTAAGGAAACCACCGCAA CCGTTTCCGACGAGGGGGATTCGAGCGGAAAACTACAGCAACCAACACCTGTTCATGGAAGAACACGAAACGGCTTCATG GCTTCACGGTTCAATAGACGAAGATCCTGTTTTCGACCACCGAGATTTCTGCGCCGACATCCTCTGCCAGCTGACGGGTG CTAACGGCGGTCAGAATCACAGCGGTGTCGTGCAAGCCTCGGCCCGTGCGCCGCCGGAGCGAGCGGTGAATAGGATTCAG AACTTCACGTACTTCTCGAAGCACAGCGATGTGAAAGGTGAGCCACGGTCGGCGGCGACGAGGGAATTGACTGTGCTTGA TTCGTGCGAGACTCCAATCGTGACGGCGGCTGCAGCTTCCAGGCTATCAGAGACCGTCAGGAGCTCGCCGGAATCCGGCC GCGGGAGCATGAGCGCTGCCGGAATAGCTGGGCCTTCGACGGCAACGTTCGACATGACTGTGACTTCATCGCCTGGCGGT TCTAGCGGGAGTGCTGAACCGGATCAGAAGGAACCGGTGGTGGACCGGAAGAGGAAGAGCCGGGAACTGGAGGAATCGGA GTTTCAAAGCGAGGTGAGTGAGCATGTTCATTCAGTTGAGTAATATTCAGTTTCTCTTTTTTTTTCTCAAATAATTTTTA AACTAACCAATAAAATTCTGTGAGAAAAGATTAGAGGATCAATAGTCTAATAAACAATGTCAAATTTGTGTTTTCTGTTT TCCATTTTCTGCAAGCTATATAAATTTGTTATATGCTGCTTCTATGTATTCTGATCTGTCTTTTTTTCACTGCAAAAGGA TGTTGATTTTGAATCTCTGGAAGCTAAAAAACAAGGCCGTGGTGCGAAGAAATCTCGTGCCGCGGAGATCCATAATCTAT CAGAGAGGGTCTGTAATCAGTACATACATAACATTAACGAGTCCGTAAATTTCATCTGTTTTTCTGAGTCTTCATGTTGA ATTTGTATGCAGAAGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTACAAGAATTGATACCTCGGTGCAACAAGGT CAAGAGACTTCTCTAAATTTACAGTACTTCTTTTGTTTTCATTGAGAGTATTCTGGATTTTACTTCCTACCTTGTTAGCT GTTTCTAATATTGATTCCTTTTCTGAACTTGTTAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAG TCACTGCAGTTACAAGTGCAGGTAAATTCTTTCTTCATGTCTTCATACCTGAAATTTGCATATTGGTGACAAGAAGAGGG TGAAATTGATTTATGCAGATGATGTCCATGGGATGTGGAATGGTGCCTATGATGTTTCCTGGAGTGCAACAGTATATGCC ACCAATGGGAATGGGAATGGGGATGGGAATGGGAATGGGCATGGAAATGGGAATGGGAATGAACAGGCCAATAATGCCAT TTCCAAACATGTTAACCGCCAATTCAGCTATGCCAGCAACAGCAGCAGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTG CCTCCTTTCCAAAATATCCCCCATGTTCCTGCTGCACCTGATTCGTCCGGAATGCAGCAACCACCAAATCAGTCTGATCA TGTGCTTAACTCATTTGCTACACTGCCTCCAGATCAATCACGCTTCCCAAACTTCACAGATCCTTTTCAACAATACCTTG GTTCCCATCAGGTACAGATACAGTTAATGCAGGTAATTTTGTCCTTACTTTTATTTCTGAGTCTTTGTTTTTATTTGACT TTGAGGTAGTATGTTGCATCATGGTAGCTAGTACCCTTGTCCATTTTTGAGATGATAAGGCAGCGGGGAAACTCTGCTGG TTTCCAAGCCACATGCTCTGATATTTTTGTAACTTCATTGATATGTGAAATCAGGCAATGAATCAACTGAATGTCAATAA GCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCAATCAGGTAAATTGCCATTTGCGCTCCTGATATATATAT ATAGTATAACAGGAACACAATCACAATTCAAGAATATTACGCGGAAAACTCCGAAATGTTAGATAACTCTAGTTAATCTC GCGGCCTGTATGTTGTAAACATAACTATTTGTATTTCAATTTTTTCAGAAGAAACATGATCTGTTGAAATCTACAAACAA CCGCTGACAAATTAGATGGTGTTGTTTGCCATTTTATCACTGGTTCCAGACTCACACGATAGTGGCTTCCAAGTCATTTT AGTATTCTTGCTCTAAAGAAGGACGACTACCATTAACAACTTACTTGCATACACTGCAAGTTATATTTTCCAGCAGTTTT ATCCTTGCTGCCATGGTGGTGTAATGTATGAGAACTAACTTTTTTGCGGAGTTCTCAATAGCAAGCTAATCTATACACGA CTAACATGTAAATTATTGTTACCCTTATAGTATTTTTGTCCCCTTTCTGTACCTTTTCTTCCAACTTAAACTTTTTTTTT TGGAAGTCCAAATATAGTAATAATAATAAAGAAGGAAGAGGCTAAGTTTGAGTATAGGAGGGTGAGGATAACAAATACAA AAACCCCAACCATCCACAAAAATAAACTTCATTCTA
CDS sequence (LotjaGi5g1v0149500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACCGTCAAAATCCCTTTTCGTCCTTTATTCTCGACTCCTTATCTTTGCTCTGCTCTGCTCGAGAGGCAAGCAAC AACCACAACTGCTCCGGCAACCATTAACAACCATGCTCAACTAGCTAGCTCTGATAACAATTTCGAAATCCGAATCCACA ACGAAGAAGAGTACCCAATACACATCTCAAAGAAACCCTCCATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAAC GGCCAGGTCGTGATGCAGAGCCAAAACCAACGGCCACCGTTAAGGAAACCACCGCAACCGTTTCCGACGAGGGGGATTCG AGCGGAAAACTACAGCAACCAACACCTGTTCATGGAAGAACACGAAACGGCTTCATGGCTTCACGGTTCAATAGACGAAG ATCCTGTTTTCGACCACCGAGATTTCTGCGCCGACATCCTCTGCCAGCTGACGGGTGCTAACGGCGGTCAGAATCACAGC GGTGTCGTGCAAGCCTCGGCCCGTGCGCCGCCGGAGCGAGCGGTGAATAGGATTCAGAACTTCACGTACTTCTCGAAGCA CAGCGATGTGAAAGGTGAGCCACGGTCGGCGGCGACGAGGGAATTGACTGTGCTTGATTCGTGCGAGACTCCAATCGTGA CGGCGGCTGCAGCTTCCAGGCTATCAGAGACCGTCAGGAGCTCGCCGGAATCCGGCCGCGGGAGCATGAGCGCTGCCGGA ATAGCTGGGCCTTCGACGGCAACGTTCGACATGACTGTGACTTCATCGCCTGGCGGTTCTAGCGGGAGTGCTGAACCGGA TCAGAAGGAACCGGTGGTGGACCGGAAGAGGAAGAGCCGGGAACTGGAGGAATCGGAGTTTCAAAGCGAGGATGTTGATT TTGAATCTCTGGAAGCTAAAAAACAAGGCCGTGGTGCGAAGAAATCTCGTGCCGCGGAGATCCATAATCTATCAGAGAGG AAGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTACAAGAATTGATACCTCGGTGCAACAAGTCTGACAAAGCTTC AATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGAATGGTGC CTATGATGTTTCCTGGAGTGCAACAGTATATGCCACCAATGGGAATGGGAATGGGGATGGGAATGGGAATGGGCATGGAA ATGGGAATGGGAATGAACAGGCCAATAATGCCATTTCCAAACATGTTAACCGCCAATTCAGCTATGCCAGCAACAGCAGC AGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCAAAATATCCCCCATGTTCCTGCTGCACCTGATTCGT CCGGAATGCAGCAACCACCAAATCAGTCTGATCATGTGCTTAACTCATTTGCTACACTGCCTCCAGATCAATCACGCTTC CCAAACTTCACAGATCCTTTTCAACAATACCTTGGTTCCCATCAGGTACAGATACAGTTAATGCAGGCAATGAATCAACT GAATGTCAATAAGCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCAATCAGAAGAAACATGA
Protein sequence (LotjaGi5g1v0149500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTVKIPFRPLFSTPYLCSALLERQATTTTAPATINNHAQLASSDNNFEIRIHNEEEYPIHISKKPSMQNDEIMELLWQN GQVVMQSQNQRPPLRKPPQPFPTRGIRAENYSNQHLFMEEHETASWLHGSIDEDPVFDHRDFCADILCQLTGANGGQNHS GVVQASARAPPERAVNRIQNFTYFSKHSDVKGEPRSAATRELTVLDSCETPIVTAAAASRLSETVRSSPESGRGSMSAAG IAGPSTATFDMTVTSSPGGSSGSAEPDQKEPVVDRKRKSRELEESEFQSEDVDFESLEAKKQGRGAKKSRAAEIHNLSER KRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQYMPPMGMGMGMGMGMGME MGMGMNRPIMPFPNMLTANSAMPATAAAAAHLGPRFPVPPFQNIPHVPAAPDSSGMQQPPNQSDHVLNSFATLPPDQSRF PNFTDPFQQYLGSHQVQIQLMQAMNQLNVNKPSTSRGQENPEKHQSEET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 62 | 526 | 465 | 2.3E-154 | – | |
| PANTHER | 62 | 526 | 465 | 2.3E-154 | – | |
| MobiDBLite | 219 | 323 | 105 | - | – | |
| MobiDBLite | 220 | 234 | 15 | - | – | |
| MobiDBLite | 247 | 263 | 17 | - | – | |
| MobiDBLite | 268 | 285 | 18 | - | – | |
| MobiDBLite | 293 | 323 | 31 | - | – | |
| Gene3D | 305 | 368 | 64 | 3.2E-19 | ||
| ProSiteProfiles | 310 | 359 | 50 | 17.854 | ||
| SUPERFAMILY | 313 | 388 | 76 | 2.09E-20 | ||
| CDD | 315 | 364 | 50 | 2.1068E-16 | ||
| Pfam | 315 | 360 | 46 | 4.9E-13 | ||
| SMART | 316 | 365 | 50 | 2.9E-17 | ||
| MobiDBLite | 507 | 529 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0149500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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