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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0150700 |
| Transcript ID | LotjaGi5g1v0150700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I reaction center subunit IV; TAIR: AT2G20260.1 photosystem I subunit E-2; Swiss-Prot: sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A, chloroplastic; TrEMBL-Plants: tr|G7KZJ5|G7KZJ5_MEDTR Photosystem I reaction center subunit IV A; Found in the gene: LotjaGi5g1v0150700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:39222824..39227322) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGATCATAAATTATTTGATTCGGAGATTCTTATTAGATGAGTAGTGACAACATTATCCAAAGGAAAGGGATATGGTG CACAAGTGGCAGCACACTAGTGGAGGTAAAGATTGACACACGCTTCTGAGGATCAGATAATTCTCCAGAATAAACCACCA AACACATTTCATTCAATCCCGCTGTTAAGATTGATTGCCACACACAAACACAAACAGAGAGAACCCGAGACACACACACA CTCTCACTCACACAGAAGTGTCATTCATTCATGGCTAGCATGGCATCAGCAGCTTCTGGATTTGTCATGTCACTCAACAT TGCTGGTGGCACCACCACCAACAACACATCAGCTTCAAGGGTCATGTTCCCTTCTGTGGGAAAGATCAACGGTTCAAGGC TTGTTGTCAGGGCAGCTGATGAAGCTGCTGCACCCGCCACCGCCACTCCTACGGCGGAGGGTGATGCAGCTCCAAAGCCC AAGCCACCACCAATTGGCCCCAAGAGAGGTTCTAAGGTCAGTAGTAGCAAACTAGCAATAGCTCTTGTACCTTTTGGTGT TTTGGAATCACTTTAACTACATAAGCATTTGATATGATCCTTAATGTTGAATATACTAGCACCCCAATTCTTTTCTAGAT CAGCTGTCAACTTCTATATTGCATATAACCATTGTTGAGACTTGAGAACTATGTTAAAGTGGTTTCTTGTTAGCAATATA TATAATCATGTTTGTAGATTGATTCCATAGCCAAAATTAAGCCCATGTTTAGAAATCCCCCTACAATTGATCTTGAAGCA TAATCATTTCTGGTGGGAAGCTTATGTGAGTAACTGGAATCCAATCATGGTGATAGAGGGTGAACATGTAAAGTTTTTCT GAATTGACAAATGGTTATGGAAGATTTCAACATACAATCAAATATGCTGATTGAGGGTGAACATGTAAAGGAGGGAAGGA CAGTGGTGAAACTTGTCCATGCTATTCATTTGAGGCTTTTAGTTAATAGTCTGGAAGTTGAGATTTATGTTGAACTGGAT ATCTAGCTAGTAACAAGGTTAGCTTCTAATTTTACTTTGCACTCAACAGGTGAAGATTCTTAGGAAGGAATCCTACTGGT ACAAAGGCACTGGTTCAGTAGTTGCTGTTGATCAGGTTAGTGGTTCAAGCACCCTCTCTGTTTTCCCACATTCCGTGATT AACCAGTTTATGTTTTATTGATTTCTCTGGATGTTGTGCAGGACCCCAAGACTCGCTACCCTGTTGTGGTTCGATTCAAC AAGGTGAACTATGCAAATGTATCAACAAACAATTATGCTCTGGATGAGATTGAAGAAGTTGCATAAGTCCAATGTACTTG TAATTTTGACTCTTGTCATGCTATTGCAGTTACTAGCCTAATGTATTTTTATGTCAGAAAAATGAATGTGTATCATATTT TCTTTATATCTATCCCCTTGATCTCTCTATAAACAACATTCAATGTGCAGTTTCTCTTAACCCACAAACACTCTTTTTTT TTATTTGAATTAAATCAGTAATTAAGCATGTTGTCCACATTTGAGAGGATAAAGTTGAGGGATAATCATGAGTAAAAAAC GATTGGAACAGAACAATTTAGGAAATTGTTAAATCTTTTAGAGGATTTTAATTCCAAATTTAAAGCGAAATTCTCACACA TTGGAACAGAACTAATTGCGGCACACTGCGTTGTTTCTATTTTTTGTGCAGAACTGAAACTATACTCACTACTTGATAGA CTAGAAGAGCAAATGTAACTAAAATAGTTGGTGACGAAAACTGGCAGCATAAATTTGTGGATTCTCACAAGAAGAATTTT GTTCATTTTTATCTTAAAGTGCATACTAATGTCTGTTTATCGAATATCGAATCATAGTGAAATGGTTCATAAATATATTC AATCACATATAGGAAACTGAAAAGATTCATGTTACGTCCACTTATTGCACAAAGTTTTGTGCACATAAGCTAGCATAAGT TAATGTGTACCATTGAGTTTGATGGAGAGAAAACAGAGAGAAAGAAGGACAAAAAGGAAAGGAATGGTTTTATATGAATG TTTCATGGGCTACTAGCAAAACTACTTTACGGAAGTGATTTTCAAGTGGCACCAAGCTAAGACCCAGAATTCATGGCCTT AGGCGGGTTAGGGTAAGCACAAGCATCATACAACTTTTTATTACTACAATCATACAAAATGCAATATCTTTAGCAGACAA CTTTCAACAAGGGATCAACACGATGCTAATGCAGAAGGAAAATGATTTGTAAACATCTGCATAAGACAGATATCCAACAG ACACTCAGCGTGAAAAAGAAAGACAAGAGAGATAAATAATGAATGTGATATATGATGGATGTGATAAGAATTGAGAAATA GAGATAAAAATTAGGTGTATGCATTGTGTATGTCTAAGGATAATTATCAAACTCGTGGGAGCCAAGCCAATAGCCACTAT ATAAACATTTCTAAACATCCCTTTAGAATTTAGAAACAATTCAAAAGATAACAGAGCCAAAAAATATACAAAGGTTAAAT CATAAAACTGTAATGGAATGACCAGTCGGGAAACAAAACTAGAAAAAGAAGAAACAAAGAGCTGCACTATTATTTGGAAG AGGTTATGACTTATGAGAGATCAGCCTTCACAAGCAGATAACACTTCTTCTAAACTCTACCATCAAAACCATCTAGTAGT CCAGTCCACATTCCCTTTACTGGTGGTAATTGAGCAACGAAAGCATTCCAAGGAGGATAACCAACACCACTGCCACGAAC ACGACCATCCAGACGTAGAGATAGATACCTGTAAAAATGTCAAACTTCTTATGCAATTTTCATATCCAAGACATTCCAAA ATAAAATGGCTTTCCATTACAGGATGTTCACCCCACATGACTTTATAACTTCATAGCAAAACCATATCTCAGACGTTTGT AAAACCACATTTTAAAACAAGATTGGCAAAAAAGGCAATTGTGTCTTGTCATGTTCATACCCTTTAGCTGAAAAGTTAGA TATACATGGGTATTACTTACACTGGAGACTCAGAGGACACACCCGCCAACTTCTTTTGTTCATCTAGCCAGCTGTTGACA ATATGGGAAAAGAAATTAAAACAATTAGCAGAATAACTTCAATTGCACATATTAACTTCCTAGAGAGGAATGCTAATAAT ATAATCTGCATTCTTTTAAACACACATGAATAAGAAGCGTGTTAGAAGGATTTGGATTTCCTTCCCGTCAGGGAATCTTA AATTCACGTTGTCAATGAATCTGATCGTTCGACGATTTATACTTCAAGTTCACCTTAACCGCCTGATTTGAAGGAACGTC TAAGCTATCTGACCTTGATCGAACGACTCAAATTCCTTGAATGTGTGAATTTAGGATTTCCTTGACTACAGAGAATCCAA ATCCATGTACAAAGAGTTGGTTAGAGACTGCGTTACTATTATTTCTCTTATTTACTAATATTTCTCTTATTTTCTTTCCT CATAGACATACTTGGACCACTCAGTGATATAAACTGGAGTCAGCTGCCAGAGTCTCTTCCTTCTTGTGGCAAGCTGCTTC ATCTCCTCAGTTTCCTCAAACTCCAAATCAGGTGAATTTCCATCTGTTACAAAGGGCACAACAAGCACCCCTCTGTCCAT AAGACCTTCTGTGAAAGGTTCACTGCGCTTGAAAGACTCTGTTATGAAGGATTCCGGGCCAGCACAGATGACAAGACGAG CAATCCCTCTCAATGAGCTAACGGGAATGATCTTCTTCTCATCCACACGGAGCTTAAGGTTTGATAAGAATTCCTCTCTT GAGAGCCGAGCCTCTTGTGCATTCTTTGCTTTGTTATCTCTGAAGTACAAGAAAGCAAATATAGATACAGCTCCAATGTC AATGCCAAGGCCTTTCAGAATTTCAGGGACTTGAGATGCTCTTGATGAATTGGCCAGTGCACCGATTAGTTGTGTGGCTG CTATGAATGCCCCCAAAGAAGCACTTGCAATAAAAGCAACATAAAAGAACATCCTAAGAGACCGAAAGGGAGAGAGAACC TCGGTCCTTATCCTGGCTGTAGAGCTGAAGAACAAATATTATTAATGATTGATGAAGCATGACTGGCAAATAGAACCTGA TGAAAGAAGCATTGCATAAAGAGGAGACCCCATAAGAAAAGAAACTTGAGTAATGTGAACTCTGCATTCATTTGAGAGGT TTGCCCAAACGCAGACAAGGAAAAACAAAATAGCCATGCTATATGGCAGACAAAATAGCCATGAGAGGTTTCATTTTGGA TTGTTACTTATAAACACTCCTCATAATAAAATATAAGGCTTCAGGGGATTCCACAGCAAGAAACTGAGTGACCATTTTCA TCGGTAAGATAATGTTGCAAACCCAAGCTCCAGGCCCAGGTTTGGCAACGTCTATGCTAGGAGGCCCAAGCCACAGCTGG AGGCCAACATTCTAGAAGC
CDS sequence (LotjaGi5g1v0150700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCATGGCATCAGCAGCTTCTGGATTTGTCATGTCACTCAACATTGCTGGTGGCACCACCACCAACAACACATC AGCTTCAAGGGTCATGTTCCCTTCTGTGGGAAAGATCAACGGTTCAAGGCTTGTTGTCAGGGCAGCTGATGAAGCTGCTG CACCCGCCACCGCCACTCCTACGGCGGAGGGTGATGCAGCTCCAAAGCCCAAGCCACCACCAATTGGCCCCAAGAGAGGT TCTAAGGTGAAGATTCTTAGGAAGGAATCCTACTGGTACAAAGGCACTGGTTCAGTAGTTGCTGTTGATCAGGACCCCAA GACTCGCTACCCTGTTGTGGTTCGATTCAACAAGGTGAACTATGCAAATGTATCAACAAACAATTATGCTCTGGATGAGA TTGAAGAAGTTGCATAA
Protein sequence (LotjaGi5g1v0150700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMASAASGFVMSLNIAGGTTTNNTSASRVMFPSVGKINGSRLVVRAADEAAAPATATPTAEGDAAPKPKPPPIGPKRG SKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIEEVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 137 | 136 | 1.6E-63 | ||
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 138 | 118 | - | – | |
| MobiDBLite | 51 | 80 | 30 | - | – | |
| Gene3D | 73 | 138 | 66 | 1.8E-37 | – | |
| SUPERFAMILY | 77 | 137 | 61 | 2.65E-27 | ||
| Pfam | 78 | 137 | 60 | 3.8E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Cellular component | Photosystem I reaction center | A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi5g1v0150700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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