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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0152700 |
| Transcript ID | LotjaGi5g1v0152700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II reaction center Psb28 protein; TAIR: AT4G28660.1 photosystem II reaction center PSB28 protein; Swiss-Prot: sp|Q0JG75|PSB28_ORYSJ Photosystem II reaction center PSB28 protein, chloroplastic; TrEMBL-Plants: tr|I3RZZ4|I3RZZ4_LOTJA Photosystem II reaction center Psb28 protein; Found in the gene: LotjaGi5g1v0152700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:39883193..39885542) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTACACACCAGCCTTTTGTGGACCACAATTTTACTCTTTTATGACTACCAGAGCAACCATTTTTTTGTACACAGTT CATTTTTCAATGGCAACTCTGCACTCTCTTGCATTGTCCTCTCCGCTTTCCAACTCAATTCAGAAGCCACGCTTATACTC AGGTAAACACAATCACTTATGTTTTCTTAGTATATGAAGTGTGCAAAGACTCAGATTCTGAGACTCTTCATACAAGTTGG GATGATGCAATTATGTTAGACATTGTATGGATTTGATGATATTTATGTCAGCATGTTTGCTTGGGGATTCAAATTTATGG TTATTGTTCATCTTAAGTTCTATACCTGAAATTCCACAATTTCATTCAGATTGGGTTTTTAGTGTTAAGGCATTATAGTA TGGATTGTCATTAACATTGTATTGGTTGATTGGTTTGTCCCTATTGTACAACAAAAGGAGGCTGGCATTCTTTTCATTTT CATTGTTTTTTCTTGACATCATAAAATTGTCAGAGCAAAGCATTTAGAATAATAGTATAATATAAACATATTGAAGGACC AAAAAGTGTGATACATTGATTTGTGCAACCTTAAGAAGAAGCAGGATTTCGGTTGTAAGTTTGGAGTGATGTACCCATGT TGTGGAGAAAAGTAATTTGAAAACTGAAAATCTACAATTAACAACAGAATTAGCACTATCCTGAAGTTTTCAAGCATATG GGATGATAAGAGCACAGCTATATTATGAATAGACTGTGTACACAAAATCACAACAAACCTATCACATGGCTTCGGTGACA TACAGGGTAATGTTGACAATACAGGCAGGATTTGATTTTTTCATTAAAAGTAACATGTTGTTTATGCTACTTTAAAAAAT TCTCACCATCAAGTATTTTTTATGCAGTAATCGTATAAGTTCCTTTAGAGTAGCGTGTGTTTGTGAGTTTTTAGGGGAGG GAAGGGGAAAGATTTGAGGGGAATGGGAGGGGAGGGCAAGTGAGAGTGAAGGGGGGTAAGCCCTTGCCTTGTTTGCAAGT TCAAAATTCCTCTAAACCCCCCAATTTTGGGAACTCGACAAAACAACTAAATGAGGGTCTTGGAGGATTTTCAAGAATTC CTCAAACCTTTCACACCTTTTTAAAATCTCCCAAACAAGGGGAGAGATTCTCATATGTCTCACCCTTCCCTCCCCTCCCC TAGGAAATCCAACTCACAAACACACTCTTAGTCTCAAGCTACATTTCGCAGGGGTGCCATTTTCCCTTAGCCCCTAAAAT TATAAAAGTTCTTTGGACTTTTGAAGTGCATATGATTTCTTTGAAGATGTTTATCACTAGCAATTTAAAGTAATGCTAAT GGCCTGATTTCATTCATTGTGAACATGATAGACTCTTTGTTTATGCAGTCCCATCTTCAATTGTCCAAAGAAGCTCCAAC TCCTCATTTAATGGTCAACATTTACACCTTCCACATTTGAGGTTACCTAAGCTAACACAAAACACTGCGATGCACACGCC TGTTATCATGATGGTGAAACCAGCAATTCAGTTCATTCAAGGAAATGATGAACTAACAATACCGGATGTGAGGCTGACAA AATCAAGGGATGGAACAAACGGCATGGCGATCTTCAAGTTCGAACAACCCTCGGTCTTTGACGCTTCTGGAGAAGTAGGT GATATCACTGGTTTGTACATGATTGATGAGGAAGGAGTCCTTCAGTCCACTGATGTAAGTGCTAAATTTATCAATGGAAA GCCCTCAATAATTGAAGCCAAGTACATAATGCGGACGCCACGGGAGTGGGATAGATTCATGAGATTCATGGAGCGGTACT CGAATGCAAATGGTTTGCAATTCATAAAGAAATGAGTTGATGTACTAACTTTTCCCTTCTATTCTTTTTTCCTCTGTCAA GAAGTTTGATTTCTGTAATATAGTTAGATGGAACTTGAGTGAAATGCAAAATTGGCGGACTCATAACTTCAATTCAAGTC CACATATCCCTATTGACAACCATTTTTGTTTTATAAAATGGTCATTGTCTTGCGGCTGATTAGTTTTCATGTGACTGTTT TTATATAAAAGAGTTGGAAAGCTTGTTGGAAAGCTTGTTGTTTTCAATGACTTCCTTTTGTTATGTTTTGAATTAAGGAT GAAATGCCCAGCATGATGCTTGGTAATTTCTGACCATATTCTGTCTGCTGTTCTATCTGCTTAACTTATTCATTTGTGTC TATTTACCCTTTTTATAATTATGGAATGCCTTTGCCCGGATGCTTGAGACTAATTTAGCCGGGATTTAGGCTATGTTTGG ATACGCACTGGTGCAAACAAATAGTAGCAC
CDS sequence (LotjaGi5g1v0152700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACCAGAGCAACCATTTTTTTGTACACAGTTCATTTTTCAATGGCAACTCTGCACTCTCTTGCATTGTCCTCTCC GCTTTCCAACTCAATTCAGAAGCCACGCTTATACTCAGTCCCATCTTCAATTGTCCAAAGAAGCTCCAACTCCTCATTTA ATGGTCAACATTTACACCTTCCACATTTGAGGTTACCTAAGCTAACACAAAACACTGCGATGCACACGCCTGTTATCATG ATGGTGAAACCAGCAATTCAGTTCATTCAAGGAAATGATGAACTAACAATACCGGATGTGAGGCTGACAAAATCAAGGGA TGGAACAAACGGCATGGCGATCTTCAAGTTCGAACAACCCTCGGTCTTTGACGCTTCTGGAGAAGTAGGTGATATCACTG GTTTGTACATGATTGATGAGGAAGGAGTCCTTCAGTCCACTGATGTAAGTGCTAAATTTATCAATGGAAAGCCCTCAATA ATTGAAGCCAAGTACATAATGCGGACGCCACGGGAGTGGGATAGATTCATGAGATTCATGGAGCGGTACTCGAATGCAAA TGGTTTGCAATTCATAAAGAAATGA
Protein sequence (LotjaGi5g1v0152700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTRATIFLYTVHFSMATLHSLALSSPLSNSIQKPRLYSVPSSIVQRSSNSSFNGQHLHLPHLRLPKLTQNTAMHTPVIM MVKPAIQFIQGNDELTIPDVRLTKSRDGTNGMAIFKFEQPSVFDASGEVGDITGLYMIDEEGVLQSTDVSAKFINGKPSI IEAKYIMRTPREWDRFMRFMERYSNANGLQFIKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 16 | 194 | 179 | 1.4E-88 | ||
| PANTHER | 16 | 194 | 179 | 1.4E-88 | – | |
| Phobius | 17 | 25 | 9 | - | – | |
| Phobius | 26 | 194 | 169 | - | – | |
| Hamap | 83 | 192 | 110 | 29.701 | ||
| Gene3D | 84 | 187 | 104 | 2.6E-45 | ||
| TIGRFAM | 86 | 192 | 107 | 1.3E-43 | ||
| Pfam | 86 | 191 | 106 | 6.3E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0152700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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