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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0153800 |
| Transcript ID | LotjaGi5g1v0153800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151R2K2|A0A151R2K2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0153800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40035114..40037749) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGCTCAAAAAGAAGTTGTCGGTATGGAAATATAAGTCTCTTTCGTTTGTTGGTAGAATCTGTTTAATAAAGAGTGTT CTCTCCTCCGTTCCATTATATTTCTTATCTTTCCTCAAAGCACCGAAATCAGTGTTGAATCAGTGTAGGGAGATTCAACG AAGTTTCCTTTGGGGAGGGTGTGAAGGTGAGAGGAAAATTGCATGGGTCAAGTGGAGTGCGGTGTGAAAACCAATGGAGG ATGGAGGCTTAGGGATAAGAGACTTGGAAACATTTAATAATGCGCTTTTAGCAAAATGGAGGTGGAGGATCTTGAGTGAT CAGAACAGCATTTGGTGCAGAGTTTTGAATGCGAAATATGGTGTACATGGTAACCGGTCTGAATGGGTGGTTGAGGGGGG TTCGAGCTGGTGGAGGGATGTGTGGAGAACTAGTGGAGGAGAGGGTGGGTGGTTTGAAGTAGGGCTGTCCACCGGTCGGG TTCGGTCGGTTTCGGGCCCAAAAAGCTCCACCGACCGAACCCGCATGTCACAAAACTTGGCCCATAACCGACCGTGACAT CTTTCGGTTTGGGTCGGTTTCGGGTTTCTCGGGTAATGGGCGGGTCGGGCGGGTTGGGTCAGTTTCGCAGAGATCAAGTA GATGAAAAATTTCAATTTGAGTAATTTCAGATCAGATCCAGATTCCAGAGATACTACCAAGTATCAACTTACCAAGAAGT CAAGAATGTTTTCCATTGCTTTTCTCATGCGAAAGAGCATGTTCACTTCATCCTTGCGATTTCACATCAGAATCGATTGA TGAAGATGAACAGGCTATTTCGGATCAGAGAAGCATGGAGCCACGGAGGATGAACCGATTTCAGAGGCTTAGGGTTTGAG TCTTTGAGATGCGTGAGACTGTGAGGGAAGAAGGCAAGAAGCTCATGCAGATGCTGTTGCACTATGGAGTGTGGTGGTGG AGTGGCTAGACCGCTAGGGTTTGAGATGTGTGAGGGTGCAGAGGATGGCGGCGCAGAGGATAAGGAGAAGGGTGGTGGCG GCTAGGGTTTGGAGTTTGGAGAGAAGAAGAAGGGGAGAAGGGTGGTGGTGGCGGGTTTGAGAGGTAGGGTTTCTGGGTTT GAGAGAAGAAGAAGAAGAGGAGAAGGGTGGTGGCGGCGGCGGGTTTGAGAGAAGAAGAAGAAGAGGAGAAGGGTGGTGGT GGCGACTGGCGACGGCGGCGGGTTTGAGAATTGAGAGAAGAAGAAGAAGAGGAAGAAGTGAAGAGAAAGAGAGAGGAGCC GGATTATTAGGTTTAGTTTGGGTTGGGTTTGGGCCGGGTGAATTTTTTTTTTTATAGGTTTAGTTTGGGTTGGGTTTGGG CCGGGTGAAAATTTTTTTTTTTATATTGGGTTCGGTCGGACCAGGCTCCAAACCGTAACCGACCGAACCAACCCAAATGG AGCCGGTTTTTCTCCATTACTCAACCCGCCACCCGACCCGACCGAACCGAGAAGGCCTTTTTTGGTAGCGGGCCGGTCGG TTTCGGTCGGGCCCAAAAAAGTTGGACAGGCCTAGTTTGAAGAGCATACCAAAAGGAAGGTTGGAGATGAGAGTGATACA CTGTTTTGGCACGATAACTGGATAGAGGGTGAGGGTCTGCTAAGGCAAAGATTTAAGCGTCTTTTTGATATCTCTACCCA AAGACATTCTTCGGTTGCCAACATGGGTGAATGGAGGAATGGAGTGTGGGATTGGAAGTTGGGCTGGAGGAGGGGTTTGT TTGTGTGGGAGGAACAACTAATGTGTTCTCTTTTGCAGGTTATTCAAGCTCACTCTTTACGGTTAGAGGCTAAAGATGGA TGGGTGTGGAATGCTGATCCTGGCGGGATTTTCTCTGTTAATTCAGCATATAAAATTCAACAGTGCATGGACCATGAGGG AAATAAAGACGTGTTCAGAATTCTCTGGAAAATTAGAGTCCCATCTAATGTTACTGCTTTTGTATGGAGGTGTTTACTAG GTAGAATTCAGACTCGGGATAACTTGCAGAAGAGGGGAATCATCAATCAGGGGCAGAGCACAAGCTGCGTTTGGTGCTTG GACATGGAGGAACCTATCTCTCACCTTTTGTTTACCTGCCATTGCTCCTGGAGAATTTGGTCAAGGTGTTATGAGTGGCT GGGTATTCAAACTGTTATGCCACAGGAGATCTCTCAGCACTTCGAACAACATTGTGGTGGTGGGAAGATGGAACTGAGGC TGGCCAGGATGGTGGTCTGGTGTGCGTGTGTATGGTCGATTTGGCTAGCAAGAAATGAGGTAATCTTTAAGTCTGCTGTT TTTGACGAGGAAAAGGTGCTGGACACAATTAAATTCAGAGCATGGAATTGGCATATATGCAAATCAAAAAGCTTCCTTTA TTCACTGTATGAGTGGTATTCTAATCCTACCATCTGTATTGAAGGGTTTACATGTTAACTAGGCTTGTTAAGAGGAATTC ATTCGTTGGGACCTTGAAGAACTAAGGAAAAGATGTCCAAGTGGCTACTGGGTCACGCTTGCAGCACTTTAATTGGAGTA CCTGGAGGTTATATTTTGTCAAATGGATGGATTGTTTGTTGGTTAATTCATGTGGGGTTGGGTGGAGCTAGCTCCT
CDS sequence (LotjaGi5g1v0153800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAATGGAGGAATGGAGTGTGGGATTGGAAGTTGGGCTGGAGGAGGGGTTTGTTTGTGTGGGAGGAACAACTAAT GTGTTCTCTTTTGCAGGTTATTCAAGCTCACTCTTTACGGTTAGAGGCTAAAGATGGATGGGTGTGGAATGCTGATCCTG GCGGGATTTTCTCTGTTAATTCAGCATATAAAATTCAACAGTGCATGGACCATGAGGGAAATAAAGACGTGTTCAGAATT CTCTGGAAAATTAGAGTCCCATCTAATGTTACTGCTTTTGTATGGAGGTGTTTACTAGGTAGAATTCAGACTCGGGATAA CTTGCAGAAGAGGGGAATCATCAATCAGGGGCAGAGCACAAGCTGCGTTTGGTGCTTGGACATGGAGGAACCTATCTCTC ACCTTTTGTTTACCTGCCATTGCTCCTGGAGAATTTGGTCAAGGTGTTATGAGTGGCTGGGTATTCAAACTGTTATGCCA CAGGAGATCTCTCAGCACTTCGAACAACATTGTGGTGGTGGGAAGATGGAACTGAGGCTGGCCAGGATGGTGGTCTGGTG TGCGTGTGTATGGTCGATTTGGCTAGCAAGAAATGAGGTAATCTTTAAGTCTGCTGTTTTTGACGAGGAAAAGGTGCTGG ACACAATTAAATTCAGAGCATGGAATTGGCATATATGCAAATCAAAAAGCTTCCTTTATTCACTGTATGAGTGGTATTCT AATCCTACCATCTGTATTGAAGGGTTTACATGTTAA
Protein sequence (LotjaGi5g1v0153800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEWRNGVWDWKLGWRRGLFVWEEQLMCSLLQVIQAHSLRLEAKDGWVWNADPGGIFSVNSAYKIQQCMDHEGNKDVFRI LWKIRVPSNVTAFVWRCLLGRIQTRDNLQKRGIINQGQSTSCVWCLDMEEPISHLLFTCHCSWRIWSRCYEWLGIQTVMP QEISQHFEQHCGGGKMELRLARMVVWCACVWSIWLARNEVIFKSAVFDEEKVLDTIKFRAWNWHICKSKSFLYSLYEWYS NPTICIEGFTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 247 | 228 | 1.1E-30 | – | |
| PANTHER | 20 | 247 | 228 | 1.1E-30 | – | |
| Pfam | 57 | 146 | 90 | 1.0E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0153800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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