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LotjaGi5g1v0155500.1

Overview

Field Value
Gene ID LotjaGi5g1v0155500
Transcript ID LotjaGi5g1v0155500.1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0155500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:40260738..40262192) extracted from Lotus japonicus Gifu genome v1.2.

CCCATAGGTGGGGTGCCAAACCCAACTCCCCATCTACACCGAGCTTCCATTGATCCTCCAATGGCGGATAGGATTAGCAA GCTTCCAGATGAAGTTCTGTGTCAAATTCTTTCATTTCTTCCCACTGAAGAAGCTGTTGCCACCAGTGTTCTCTCACAGA GGTGGAGTTCACTCTGGCTTTCAGTCCCAACCCTAGATTTCAACGACAATCGATATCTCAAAGGCAAGGAATTACAGTCT TCCTTCATCAATTTCGTGTACGCTATTATTCTCTCACGATGTTCGAATCAACCCATCAAAAACTTCACCCTCAGCGTAAG CGAAGAATGCCCCTATTCCGATCTCAAGGTATGGTTAAACGCCGCAATGCAACGCCAAGTTGAGAATCTCTATCTCAGTT TTCCCGGTGCATATGCGCCTTGCTTTATTCTCACCTGCAAAACCCTTGTTGTTCTCAACCTGAAATCTGTATATTTTGAT GGGTTTTCTTCTGTTGACCTTCCATCACTCAAAACACTGCATTTGGATCTTGTTGAGATTTTGAACCCTCCAACTTTGAA GGGCCTTGTTTATGGGTGTCCAGTTCTTGAAGATTTGGAAATAAATGACATGATTTATGTTCATGATGATGGCCCTTCAC CTGAGGGAAAAGTTCAAAGTTTATCCAAGTTGGTTAGAGCAGAAGTTTTCTTGTACGGTGATATTTCTATTCCTGTGGAA GCTTTTTGCAATGTACAGTTTCTGACCTTAGACAGGGTAAGGAGAATGAATGTGTACTGTTTAGTTTGTAATTTGTTTCC TTCATATAATACTTCTCATAATTTATGTTTTAAACTCTTGCAGTGCGATGGTGACATTCTTGTGTTTCCTAATTTAATTT ACATGGAGCTTCACCTTGGAGGCTCGATTAGTTGGAGTTTGGCCCTCGATATGCTCAATCATTGCCCTAAGCTTCATACT GTTGTCTTTGATTTGACTTATGTTGATAAATATGATGTTTGGCCAGACCCAGGTTTTGTTCCTGAATGCTTTCGTTCACA TCTTAGGAAGTGCTTTCTTAAAGGTTTTAGATGAGTGGAATGTCAAAGGAGATTTGCAAGGTATGTTATGCAAAACTCAG CGTCGTTACGTACCATGAAATTTTGCAGTGGGCCAAATCATCGGAGAACGCTTGAAATGATGACAGAATTAACCTCGTAC CCAAGGAGCTCTGCAGTTTGTGAACTTTCATATGAGTAATTGATATGTTTGTTACTCGTTAGTAGTTGGAGATCATTCCT CAAGTGATTGCATTTGTTCTTAGTTCTACTTTTAATGTATCTACTGGTTTGATGGACACAAACTTTGTGTGCTATTGCAC TCTTTCTGCTGTTATTGTTTTCAATATTACTATCTCATGCAGTACAACTACTTTTCTAAATGTAATGTAAACTGAAATGA GAATAGATTTTCAAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0155500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGATAGGATTAGCAAGCTTCCAGATGAAGTTCTGTGTCAAATTCTTTCATTTCTTCCCACTGAAGAAGCTGTTGC CACCAGTGTTCTCTCACAGAGGTGGAGTTCACTCTGGCTTTCAGTCCCAACCCTAGATTTCAACGACAATCGATATCTCA AAGGCAAGGAATTACAGTCTTCCTTCATCAATTTCGTGTACGCTATTATTCTCTCACGATGTTCGAATCAACCCATCAAA AACTTCACCCTCAGCGTAAGCGAAGAATGCCCCTATTCCGATCTCAAGGTATGGTTAAACGCCGCAATGCAACGCCAAGT TGAGAATCTCTATCTCAGTTTTCCCGGTGCATATGCGCCTTGCTTTATTCTCACCTGCAAAACCCTTGTTGTTCTCAACC TGAAATCTGTATATTTTGATGGGTTTTCTTCTGTTGACCTTCCATCACTCAAAACACTGCATTTGGATCTTGTTGAGATT TTGAACCCTCCAACTTTGAAGGGCCTTGTTTATGGGTGTCCAGTTCTTGAAGATTTGGAAATAAATGACATGATTTATGT TCATGATGATGGCCCTTCACCTGAGGGAAAAGTTCAAAGTTTATCCAAGTTGGTTAGAGCAGAAGTTTTCTTGTACGGTG ATATTTCTATTCCTGTGGAAGCTTTTTGCAATGTACAGTTTCTGACCTTAGACAGGTGCGATGGTGACATTCTTGTGTTT CCTAATTTAATTTACATGGAGCTTCACCTTGGAGGCTCGATTAGTTGGAGTTTGGCCCTCGATATGCTCAATCATTGCCC TAAGCTTCATACTGTTGTCTTTGATTTGACTTATGTTGATAAATATGATGTTTGGCCAGACCCAGGTTTTGTTCCTGAAT GCTTTCGTTCACATCTTAGGAAGTGCTTTCTTAAAGGTTTTAGATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0155500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADRISKLPDEVLCQILSFLPTEEAVATSVLSQRWSSLWLSVPTLDFNDNRYLKGKELQSSFINFVYAIILSRCSNQPIK NFTLSVSEECPYSDLKVWLNAAMQRQVENLYLSFPGAYAPCFILTCKTLVVLNLKSVYFDGFSSVDLPSLKTLHLDLVEI LNPPTLKGLVYGCPVLEDLEINDMIYVHDDGPSPEGKVQSLSKLVRAEVFLYGDISIPVEAFCNVQFLTLDRCDGDILVF PNLIYMELHLGGSISWSLALDMLNHCPKLHTVVFDLTYVDKYDVWPDPGFVPECFRSHLRKCFLKGFR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
2 305 304 2.4E-71 –
PANTHER
PTHR32212:SF263
2 305 304 2.4E-71 –
ProSiteProfiles
PS50181
2 38 37 10.478
IPR001810
Gene3D
G3DSA:3.80.10.10
3 283 281 6.5E-26
IPR032675
SUPERFAMILY
SSF81383
3 48 46 3.92E-13
IPR036047
Pfam
PF00646
4 41 38 3.2E-7
IPR001810
SMART
SM00256
8 47 40 8.4E-5
IPR001810
SUPERFAMILY
SSF52047
104 275 172 2.43E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0155500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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