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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0156500 |
| Transcript ID | LotjaGi5g1v0156500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56380.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0156500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40530127..40535588) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGGACTAATTTTTCCACTTTGACCATGTTTTGAAGTTACGAGAATGTTGTTGGTATTGAAAATTTCATTTTATGGAA AATGAATGCATTAGGGATTACTGTTTGGATTTTTGTGTAAGAATTGAATAACTACTCGAGGACTGGTATCGTTTGGAAGC AACCCCAAAATGAAAATGGATGCTGCTATAGACGTTTGTCTATATAAGTGTGAAAAATACATTACCCACTTCACTTCACT TGAGTAGTCTATCACTGAAAATACTACATTGTTCCAATGTCGGATAGAATAAGCAATTTGCCAGATGAACTTCTCTGCCA CATTCTATCATTTCTCCCAACGGAAAATGCTGCTGCCACAACTATTCTCTCAAAGAGGTGGAGATCACTCTGGCTTTCAG TCCCTACCCTAGACTTTCACAAAGAACGATATCTCGAAGGGAAGGAGTCGAAATCGTACTCTGACTTCAGCAATTTCGTA TACGCTGCCATTCATTCACGAGGTTTGCATCAACCCATCAAAAACTTTACCCTCGACCCAGGTTACGATTGTCCATTTGA TGATGTCAAGGAATGGTTAAAAGCAGCAAAAAGACACCACCTTGAGAAACTCGTAATCTGGTATCCCTATTCACCAGTGA CTTGCTTTATTCTCAGCTGCACAAACCTAGTTGTTCTCAAGCTGACTTATGCATATTTTGAAGCTTTTTCTTCTGTGAAC CTGCCCTCGCTCAAAACACTGTATATGGACGATGTTGAGTTTGTAAACCCTCAATCTTTGATGAACCTTCTATATGGGTG TCCTGTTCTTGAAGATTTGGTAATATATGACGTATATTTTGATGACTCAGATTTGATAGAGGATGAAATATCCTATAATG ACTCTCCCTTTGAGGGGCAGGTTAATACTTTATCCAATTTGGTCAGTGCAAATGTCAATTTTTGCAATGCTTTTCATATT CCTGTGAAAGCTTATTCCAATGCACAGTTTCTGCACTTAAACAAGGTTTGTTACTTTGTATATGAAAAAGGTGAATGTGT TGACTTTGTTATTTGTTTGTTTCCTTTACACTACAGATAATGTCTCATAATTTATCTTTAAAACTCTTGCAGTGTGATGC GGACATTCATGTGTTTCTCAATTTAACTTATCTGGAGCTCTTCTCTGGATGCTCTCTTAAATGGAATTCGGTGCTTCATA TGCTCAATCATTGCCCTAAGCTTCAAACTGTTGTCTTTATTACTTATGATGGTGCTGATAAGGTTTGGCCAGACCCAGGT TTTGTTCCTGAATGCTTTTCTTCTCATCTTAGGAAGTGCTTTATTAAAGGTTTTGCAGGAGTGGATTATCAGATGAGATT AGCAAGATATGTTTTGCAAAACTCAACATCATTACGTACCATGGCAATTTCTGACCCCTGGGATCGCCTAAATCACCAAG AAAAGCTTGAAGTAATGGCAGAATTAGCTTCATACCCGAGGAGCTCTGCAGTTTGTGATCTTGTATTTAAGTAATTGATA TGCTTGTTAGTAGTTGGAAATTATTCCTAAAGTGGATGACTGCATTTGTTCATAGTTTAATGTATCTGCTGGTTTTGGTG CTTTTGTTAAACAAAAACTTTGTGTGTTGTTGTACTCTTTCTCCTGTTATTGTTTTGAAAATTGCTGATCTTATGCACTA TAGATCTACTTTTGTAAATCTGAGAAACTGAAATGAGAGTAGATTTTCTAATTTGTTGTGTGGATGTGTATGCGTGTGAG TCTTAGACCTTTGAACCTTCCTAGGGGTGAAGAATCTGTGGAGTTCTTATTTAATATTCATTACAAGTCCTACTTTATAG TAATTAAAAGCACTTGAGTAAATGAATTTTTTTAGCTTGAAAATTACTGATTGCTTCAAGCTTGAATTGATTCAGTATTT TGTATAAAGTTAGAAGGGAATTTTTATTTTAACATTATTCATAAATTATTTCCCTCTCCTTCTCTCTGTTATGGCTAAGG AAGATAATCCTTTGGTGTTTTTGTTTGTAAGCTTTAATTCATAAGAAGGGGGTATAATTGATATTGATATTTGATGAGGC ATGTGGTTAAATTTGCTGATGAAGATTGTAAGATCTTGTAGCCTTGTAAAATTTGAAATTTTTAAAAGAATGTCCACGGA GAGAGATCCAAATCCAAAAGATGTTGTAAAATTTTCAAAATGACATAGCGAACTTGTCTTTCTGATGATAATGTGATCTT GCCCTTGTTACGCTTAGTTGGGGAAACTTCTAAAATTAGCAAGATATGTTTTGCAAAACGCAACCTTGTTACGTTCCATG ATCATAACAGAATTGGCCTCATACCCAAGGAGCTCTGCAGTTTGTGATCTTGTAATTAAGTAATTGATATGCTTGTCAGT AGTTGGAAATTATTCCTAAAGTGGCTGACTGCATTTGTTCTTATTTTAATGTATCTGCTGGTTTTGGTGCTTTTGTTAGA CACAAACTTTGTGTGTAGTTGTACTCTTTCTTGTGTTATTGTTTTCAAAATTGCTGAACTTATGCACTAGTGCACTACAG CTCTACTTTTGCAAATCTGACAAACTGAAATGAGAGTAGATTGTCTAATTTGTTGTGTGGATGTGTATTCGTGTGAGTCT TAGACCTTTTTACCTTCCCAAAGGAGAAGAATCTGTGAAGCTTTTATTTAATATTCATTACAAGTACTACTTTGAATTAA TTAAAAGCACTTGAGATAATGAATTATTTTAGCTTGAAAAGTACTGACTGCTCAAGCTTGAATTGATTTAGTATTTTGTA TAAAGTTAGAAGGTAATTTTTATTTTAACACCATTCATAAATGATCTCCCTCTCCCCCTATATCTCTCTCCTCAGTTATG GCTAAGGAAGATAACCTTTTTGATGTTGATTCATGTTGATATTTGATGAGGCATGTTTAAGTTTGCAGAAGATTGTCATA CTTAATTCATGGTAATGTGAATCCTCCTTTCAACAATTAAGGCAAGATGATATGTCATTGGATTTAAATACTAAACTTAT AACCTGGACAGAAATATAATTTCTTGTTCAGTGAACTTATAAACTCGATAGAAACATATTTTCTTGTGTCGTTGGACCTG CATCTACCTCCATTGGTTGATAAAACAAGTTTAGTTGGGGAAACTTCTAATACTCAAGGACTTCACATGATAGGTACAAT ATTAGATGATTCTTGTGTCATTTGTAGTCTCATTCCTTCCACCTCTCTTCTAACTCATTTCAGATTTTGAAAAGAAGGAT AGAAACATATATATAAAGCCAACAACTGATTTTTTGTATATGATATTTAAGTTTGTTTTATGGACTTATGAAGTCCATAA AAGAGTCACCATTTCCACATCTAGCTTTATGTCCTCGACCCTCTTGCATATCATGGGGTCTGCCAAAATTTAAAGTTTCA GCCTTCTCTTGTTTGTTGGATATACTTTGGTGTATGGATCCACCCTGATGGTAAGGACTCATTTAATGTGTGCTGTTTAC GTATGCTGCATGCTTCTACAGTTAGTAATATAACAATATCTTGCTAGAAAAGAGCCGATTGCTTACTCCCTTCCATCACA TCCACAAACAAGCTTTCATCATGCTTAGCTTAAAGACAAAAGGAGATCTTTTTTGTTTTCTTATATTATATCTCTGCTTA GACTTGAAGGTGCAGAGTTATATATGAGGGGCTTGAGAAGTAAGATGACAAACCTCCAATAGACAACTAGAAATATGCAT CTGATGAAAACAAATTGTGTTCATCTTATTGGCTCTTTTTATTTTGCTAAACCAAACTAATAGCCATTCATTGAACAGAA AGACATGAAGCATTGGTTGTGTGCAGGAAATGAACTTTTTCGCCTTATCATGGCATGGTTGCAAGTAAGCAGTTGTGCCA TCTACTTCATTGCAGTCACTAATCAGATTAAGTAATAACTGCTGTCAGGTCTAATTGGGAATGGTAAGTTTGTGTTTGTT TTGTAGAATTAGGAGACTTCAAATTTTAGAGCCTTAGGCTATGAGTTATCTGAAGGTTTATTGGTTTTTTAAGGTTGTAG GACTGCATAGAAATTGGAAGTAATTCGTGTTATGACCTGTGATAGGCAAGTGTTTCATGTTGGATTCTTTGCTCATCTTG ACTAATTCTATTTTTCTCACTTCCCTGCTTCTATTATTAAATATCCATTTTTAATTGGATAAAATGTTTTGTTTTAAGCT TTCATGCTCTGAGCTTGAGTTAGTGAAACATTGGAGGGTTCTCTAGAGCTTCCTTTTTGCCTTGTTTGAAGGGAGGATGA GTTTATGGGCAGATTTCTATATTATTCGTGTTATGTTTTGTTTTTTCATATTTTGAAAAAACAGATAGAAGAAAAAGTTT GTGTTTAACAGATAGTAGAGTTATGAGTGATACAAGTAAGAATCTATTAATTGCCGTTTCAAGTCTTCTAAGTGCTGCTT GTTGGTTAAACATGAACTGATCTTATTTCCATTGTTACCTAATTTTACATTCTGGTAGTTGTATTTTTGTTTCCCTGTGA GGATGAGCTTGAGGGTGTCATTTTAGATATAAATTAAAATTTCACTAGCAATTCTGGGAGTGGGATTTCGGCTTTTGTTC AAGGATATATGTAAAGGATAACCTAGCAAATTTTGATCAGGCTGATAGCTGGCAGCAGAGTGCATGATCTTTCTGGTAGA ATCATTCAAAATTTAATCAACAAGGTTGAGCCAGTTTTTATTCTTATTTTCTATCTTCTTTGTGCATATTTTCTTACTTA TCAGCAATCTCAGAGACAGTTACGGGATGAGGGTTCTGGAGTGGCAGCGAGAGTAGAGCAGCAATGGACTGCTCCTCCGA GCCCATTTGTTAAAATTAGTGTTGATGCTTCTGGTTCCGGCTCGTCATGGGGTTTGGCTGTAGTTATTCGAAACCATTTT GGCAATGTGCTAGCTGCTGCAACAATGACACTCACAGCGGGGTTTGGAGCAGAATATGCAGAAGCATGTGCACTGAAATT TGGCCTTGAATTTGCTCTAAATCATGGATTCCAATCAGTTCTAGTGGAATCGGATTGTAAGAAAGTAGCGAATGCTGTGT CAAATAATCTGTCACATGGTTCATATCCGTACTATATTATGCAGGATATCATGCTCTTAAGTTGTAGGTTCTTATCCTTT TCCCTTACTCATATCAGTAGAAATGCAAATATGGTAGCCCATCACCTCTCTAAGTTCTCTTTGGAGAATGATAATTGTGT TTGGGTTGGGTTCACTCCTTTTTGCATTCAATCCTTTGTACTCAAAGACATTATGTCTCTTGTTGTTTAATTAAATGTTT ATGTTGACTGCCAAAAAAAAAAAAGACCCCTATTAAATGTTTATGTTGGTCCTTGAAATTATAAAGGGAATCAAACCTGG TCCCTAAATATTTTTTTTCGAA
CDS sequence (LotjaGi5g1v0156500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGATAGAATAAGCAATTTGCCAGATGAACTTCTCTGCCACATTCTATCATTTCTCCCAACGGAAAATGCTGCTGC CACAACTATTCTCTCAAAGAGGTGGAGATCACTCTGGCTTTCAGTCCCTACCCTAGACTTTCACAAAGAACGATATCTCG AAGGGAAGGAGTCGAAATCGTACTCTGACTTCAGCAATTTCGTATACGCTGCCATTCATTCACGAGGTTTGCATCAACCC ATCAAAAACTTTACCCTCGACCCAGGTTACGATTGTCCATTTGATGATGTCAAGGAATGGTTAAAAGCAGCAAAAAGACA CCACCTTGAGAAACTCGTAATCTGGTATCCCTATTCACCAGTGACTTGCTTTATTCTCAGCTGCACAAACCTAGTTGTTC TCAAGCTGACTTATGCATATTTTGAAGCTTTTTCTTCTGTGAACCTGCCCTCGCTCAAAACACTGTATATGGACGATGTT GAGTTTGTAAACCCTCAATCTTTGATGAACCTTCTATATGGGTGTCCTGTTCTTGAAGATTTGGTAATATATGACGTATA TTTTGATGACTCAGATTTGATAGAGGATGAAATATCCTATAATGACTCTCCCTTTGAGGGGCAGGTTAATACTTTATCCA ATTTGGTCAGTGCAAATGTCAATTTTTGCAATGCTTTTCATATTCCTGTGAAAGCTTATTCCAATGCACAGTTTCTGCAC TTAAACAAGTGTGATGCGGACATTCATGTGTTTCTCAATTTAACTTATCTGGAGCTCTTCTCTGGATGCTCTCTTAAATG GAATTCGGTGCTTCATATGCTCAATCATTGCCCTAAGCTTCAAACTGTTGTCTTTATTACTTATGATGGTGCTGATAAGG TTTGGCCAGACCCAGGTTTTGTTCCTGAATGCTTTTCTTCTCATCTTAGGAAGTGCTTTATTAAAGGTTTTGCAGGAGTG GATTATCAGATGAGATTAGCAAGATATGTTTTGCAAAACTCAACATCATTACGTACCATGGCAATTTCTGACCCCTGGGA TCGCCTAAATCACCAAGAAAAGCTTGAAGTAATGGCAGAATTAGCTTCATACCCGAGGAGCTCTGCAGTTTGTGATCTTG TATTTAAGTAA
Protein sequence (LotjaGi5g1v0156500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDRISNLPDELLCHILSFLPTENAAATTILSKRWRSLWLSVPTLDFHKERYLEGKESKSYSDFSNFVYAAIHSRGLHQP IKNFTLDPGYDCPFDDVKEWLKAAKRHHLEKLVIWYPYSPVTCFILSCTNLVVLKLTYAYFEAFSSVNLPSLKTLYMDDV EFVNPQSLMNLLYGCPVLEDLVIYDVYFDDSDLIEDEISYNDSPFEGQVNTLSNLVSANVNFCNAFHIPVKAYSNAQFLH LNKCDADIHVFLNLTYLELFSGCSLKWNSVLHMLNHCPKLQTVVFITYDGADKVWPDPGFVPECFSSHLRKCFIKGFAGV DYQMRLARYVLQNSTSLRTMAISDPWDRLNHQEKLEVMAELASYPRSSAVCDLVFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 373 | 372 | 3.9E-79 | – | |
| Gene3D | 2 | 357 | 356 | 1.0E-29 | ||
| PANTHER | 2 | 373 | 372 | 3.9E-79 | – | |
| ProSiteProfiles | 2 | 50 | 49 | 10.478 | ||
| SUPERFAMILY | 3 | 45 | 43 | 1.96E-13 | ||
| Pfam | 4 | 41 | 38 | 6.1E-8 | ||
| SMART | 8 | 48 | 41 | 4.0E-5 | ||
| SUPERFAMILY | 106 | 283 | 178 | 5.49E-13 | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Pfam | 151 | 176 | 26 | 1.7E-4 | ||
| Pfam | 299 | 342 | 44 | 8.9E-13 | ||
| SMART | 303 | 376 | 74 | 3.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0156500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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