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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0161800 |
| Transcript ID | LotjaGi5g1v0161800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-dependent kinase inhibitor; TAIR: AT5G48820.1 inhibitor/interactor with cyclin-dependent kinase; Swiss-Prot: sp|Q9FKB5|KRP3_ARATH Cyclin-dependent kinase inhibitor 3; TrEMBL-Plants: tr|A0A0L9VBM2|A0A0L9VBM2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0161800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41496141..41499067) extracted from Lotus japonicus Gifu genome v1.2.
TCCTTTTCCCCACACTCACCCCTTTTTCTCTTTCTCTCTCTAAAACCAAACCACTTAACCGGTAAACAACATTTCCCACT CCAATCACCACCTTCTCCTCCTCCTTCCTACTCCCTCCACCGCCGTGCCGTCGCAGCTGCGGCGGCGGATTCACCATCCT CCATGGGCAAGTACATGAAGAAAGCCAAACCCAGAGGCGAAGTCGCTCTACTAGACTCCACCGCCACCAACAACACCACC ACCAACACCACAACAACCTCTTACTTCGGGGTTCGAACCCGCGCCAAAACCCTAGCTCTCCAGAAATCGCAGCTTCAGCA ACCGGACCTCTCTCCCTCCTCTGGCTCCTACCTTCAGCTTCGCAGTCGTCGCCTCCACAAACCCCCTGTTCCGCTACATG CTTCTCCCAAGCGACCCAAGTCGCAAAACCCTAAATCCCCAATTCCTAGCCCTAGTGCTCCCAGTCTCGCTTCCCAGCAT GATGGTAACACCCTGCCGGAGAAGAAAACGCAGCACCAGAATAATTCCGATGGGGATGAAGCTTGCTTTGGTGAAAATGT CTTGGATTTTGAAGGTAGAGAAAGGTGAGTCTTCGTTCCTTTGTTGTTTTTTCTTCTGCTTATAATTCGAATTGGTTTCT TTCGCGCTCTTCGATTTTAATGCAAAATAAAGCTGACAATGGATTTTCTATTTTTTTTTAATTTTTTTAATTTTAATTTT CTGATTTGTTTGCAGAAAAATTGAAAATTGGTGAGGGTAAACCAGAGTTTTGGTTTTGGTTATTGTTTATTTATTTATTT TAATTTCATGGCTTATTAGTTTAGTGTTGAATTCTGGTTTTGTTTTGATTGCTAGATGCCTGGAACAAAGTAAAAGATGA AATTGAGTGCTGAATTTTTTGATTTTTTCCTTAAATTTATGATGTTATATTTGATTTTATGGCTTTGTTCTCTCTAATCT GATTTGTTTGCTTAGCTGAATGTTTGTCTGAAAGATGATGAATTTGTGTTGTGTTTGTTCCTCTTCAACTGATGGATGGA TTTGCTTTACAGCTTCTGTTCCTGTTTTTCTGATCTTCATCACATATGCATGCCGTTACACTCTTGTGAAAATTTTGAGC TGGATTTTGTATTAAATCTTTTGTTCACTGTCTTCTGTCATACGTTTCTCCAATGCAGGATTCAGGGGAGAAAGATGTTT TTTTTCTTCCTTTTCCTTAGAAGCTGTAAATACATTTCGTATGTTGAAATGTAACTCTCACTTGGCCATTTTGTTTGTTC TTGTTCGCCTTGTATCCCGTAAATGTTTTGTATTGATTTGAAGATTTTAACTTCAAATTAATATAAAACATCTATTCCAC GGGATTAATTAATTTTTTGTACTCTGCTATTATTACCGTTACGTTATTTGCAGGAAGTGCCGATACTTTGTTACAGTTGC AGAATTTTCAGCCCTTTTCTTAAGTTTATGTTTTTACTTGTTTTACTATCTAGCGATTGAAAATATTTCAGTAATTTCTC CTGACATGTGCTATTTTGCAATTGAAATGTGTGGTGTGGAACAAACCCACTGACGAAATGACTATATTCTGTGTTTTTGG AGATTGATTTCAAAATTCTGTATTGAGAAATAGAATGATGAGATATATTCTGAAAGATTCTCATTTCTGAATGTGTATAT TTACAATGAAGTTGACATGTATTTGAAATCTGGGTTCCTTTGCTTTAAATGTGTTGTGCAGGTCATCCTTCAATTTTTAA GCATTATCGCTTTCGTCTTTTCAGATAAACTCTCACATGAAATATTGTTTTGTTATTTGTTTTACCTTTTGCCACTTAAA TTCTTTTAGTTATTTCTAGTTTATGTTATAATTGCTTGTTTTTGCTTGCAGCAGAAGCACCAGGGAATCCACACCCTGCA ATTTGATAAGGGACCCAGACACTGTCAGGACTCCTGGTTCAACTACCAGGCCTACTTGCTCAACTGAAGCTCCTCGAAGA ACACCGCATGCGGGTCGAAGGCAAATCCCTACTGCACATGAAATGAATGAATTCTTTGCTGAAAATGAAGAGGCTCAGCA AAGGAAATTCATTGAGAAGTACGCTTTTATTGGTTTGATTTTCTCAGTTTTTTCTTACTCAACTGCAATAATGTCTTTTC CCTACAAACTAATTTATTTATTCCCCACGCGGGTCCGATCCAATTGCAGGTACAACTTTGATCCTGTGAATGAGAAGCCG CTCCCTGGGCGTTATGAATGGGAAAAATTGAAACCCTAGAAGTCTTAGTGTTAAGTGTTCCATCAAGACATTTAAAGTAG CAGGCAGGGTTAGAAATTGTTGGAATTGTGGTGGTGTTATTTCCATTTTCCATCACTTTCTATTTACTTGTAAAGAAAGT AGGACTTTCAACATGTGTAGACTAATGGTCTGTAACTTAACAGAGGTGTTGATTACACAACAATACAAATCAAAGTCCTT TGTCTAACAGCAGATCATTTAAGAGGGGCTGTAGGTTGTAGAATTAGGTGATAAAAATCTCTAATTAGGTGTCTGCGTGA GGTACAGGAATCTCCTTTTGTTCTTGTATTTTACTCTTCTTTTGTCTATACTTGTACTGATGATGGAACTCCGAACAAAA CTTTTAGAAATAAAGACCCGATTACCTCATGTAATACATGCCTGTCACTTCCTTTGTCATCTATCTGTGTTGTTATCTTG TTATGCTTCTATCTTCTATTAAATATTGGATTGGATTTGGTTCCGCGCTAGACACTGAATCTTTCATTTGTTTTAGATGA TGTTACTAGCTGTTTCTGTGACCTGTGGCAATATTGCTGAAATCTGCTGGTGTTTTGAGCGTCCTATAGTGGTGGGGGCA ATTCTAACAGTGAAATGTTTTGTCTTCTCTGTTATCATGTCTCCACA
CDS sequence (LotjaGi5g1v0161800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAAGTACATGAAGAAAGCCAAACCCAGAGGCGAAGTCGCTCTACTAGACTCCACCGCCACCAACAACACCACCAC CAACACCACAACAACCTCTTACTTCGGGGTTCGAACCCGCGCCAAAACCCTAGCTCTCCAGAAATCGCAGCTTCAGCAAC CGGACCTCTCTCCCTCCTCTGGCTCCTACCTTCAGCTTCGCAGTCGTCGCCTCCACAAACCCCCTGTTCCGCTACATGCT TCTCCCAAGCGACCCAAGTCGCAAAACCCTAAATCCCCAATTCCTAGCCCTAGTGCTCCCAGTCTCGCTTCCCAGCATGA TGGTAACACCCTGCCGGAGAAGAAAACGCAGCACCAGAATAATTCCGATGGGGATGAAGCTTGCTTTGGTGAAAATGTCT TGGATTTTGAAGGTAGAGAAAGCAGAAGCACCAGGGAATCCACACCCTGCAATTTGATAAGGGACCCAGACACTGTCAGG ACTCCTGGTTCAACTACCAGGCCTACTTGCTCAACTGAAGCTCCTCGAAGAACACCGCATGCGGGTCGAAGGCAAATCCC TACTGCACATGAAATGAATGAATTCTTTGCTGAAAATGAAGAGGCTCAGCAAAGGAAATTCATTGAGAAGTACAACTTTG ATCCTGTGAATGAGAAGCCGCTCCCTGGGCGTTATGAATGGGAAAAATTGAAACCCTAG
Protein sequence (LotjaGi5g1v0161800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKYMKKAKPRGEVALLDSTATNNTTTNTTTTSYFGVRTRAKTLALQKSQLQQPDLSPSSGSYLQLRSRRLHKPPVPLHA SPKRPKSQNPKSPIPSPSAPSLASQHDGNTLPEKKTQHQNNSDGDEACFGENVLDFEGRESRSTRESTPCNLIRDPDTVR TPGSTTRPTCSTEAPRRTPHAGRRQIPTAHEMNEFFAENEEAQQRKFIEKYNFDPVNEKPLPGRYEWEKLKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 232 | 232 | 3.9E-46 | ||
| PANTHER | 1 | 231 | 231 | 1.6E-80 | – | |
| PANTHER | 1 | 231 | 231 | 1.6E-80 | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| MobiDBLite | 17 | 33 | 17 | - | – | |
| MobiDBLite | 73 | 184 | 112 | - | – | |
| MobiDBLite | 98 | 126 | 29 | - | – | |
| MobiDBLite | 158 | 173 | 16 | - | – | |
| Pfam | 186 | 230 | 45 | 2.3E-18 | ||
| Gene3D | 186 | 232 | 47 | 5.1E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclin-dependent protein serine/threonine kinase inhibitor activity | Stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Cell cycle arrest | A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). |
Expression pattern of LotjaGi5g1v0161800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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