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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0164000 |
| Transcript ID | LotjaGi5g1v0164000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ELKS/Rab6-interacting/CAST family protein; TAIR: AT4G02880.1 ELKS/Rab6-interacting/CAST family protein; Swiss-Prot: sp|B1XVE1|SYS_POLNS Serine--tRNA ligase; TrEMBL-Plants: tr|V7BFG6|V7BFG6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0164000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42008861..42013671) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTCTTAGCTTGGTCACTATCTATTCATGCTTCCAGAAAATAGGAAATAGCGTTCCAATTTCTTGTTCCTCAATTCA ATTCACACTATATCACACACACTAGGTCAAGGTCTCTCTGCTTCTCTCATCTCTCATCTCATCATTCTCAATCCCAATTT CACACTAGACTTTCGATTTTTCGTTCCCAATTTCACCATTCTCTCTGATTCGCCATACTGAAATTGTTGTCTCTGCCGAT TTCTCGTAAGTTATGGGTTGAGGGGATGATAGAGTTTTCACTTTTGCATTTTCAATCGGCGAATTTGGGTTTTAATTGGA TTTTATTCATGATTCATGAAACATGCATTTTAATCTGTTTTGGGTTTTTCATTCGATTTTACCTGTTTCTATTTTTATAT GATTTAAACATCAAGGTTAATAAGAATCTCCCTTTTTTGGAACTTTGCAGGTTGGTTTTTCTTGATCATGGGTTTCAATT CGGTTTTTAAATCATTGCTGGAGATATTTCCACAGGTATGGCTCTTAGTTTTTGCTTTCATTTAGTTTTGATTATACTTT TTAGTTGCTTTGTGATCTGATGTTGTTGTTGGTATTCTATTTATGAATTGTGAAGTTGAATTGGTTATTGAATATTAGAA GATCATGCATTGAACTTTCTTGTTAAGCACTAAGTGCATAATTGTGTATATTTTGGTTGAATGGATATTGGATAAGATGT ATCTTACTATTTTCACTTACACTGATAATTCAATTGTAGCCACTACTTTTTTGGGGGTGTTTTTGGTGGGGTGGACAATG ATTATTGGTAGCTTCACAACAGATGATAAGGAGAAAAGAAGAAACTTAGTCCCATTTTAAGAAATCCCTAATTGTATTTT CATATGCTTGCGAATGAGCCTCCTGAATCAATGCTAATCTCTAAACTATTAAGCTTTTCTAAAATTCGGAGTATTTATAG AGATGTGTTAATATCAAAATATACTTGTCTTGTTTTTTAATCATTTTGCACTGAACAGGTGGATGCCAGATTATTGAGGG CTGTGGCTATTGAACACCCAAAGGATGCTGATGTTGCTGCTGAAATCGTTCTTACTGAAGTCATTCCATCGATGTCTGTA AAATCACCCCCTGTTAATCCTCCACAGGATAATAGTCCTGTAGTCATGAACATGGAAGGTGCATTTTCTTGCTCTGCACA TGCATTTCAATAGAGTTATTGTGCTTCGGTTGAACACTTCAACTGGTTTACTAATATATTTCTAAAATGACGTGTTGAAT CCTTAGTTGAAAGCAAGGAGGAAGGAAATTTGTTGGTGCATGATCAGCTTTTTAAAGATGCCGATGTGGAAACTCCTTCT TCATCTTCACATTTGATATCTGAAGAAATCACCAAAACTGCTGATGTGGGCACTCTTGGACTGGATCTGAATGTGGCTCT TGATGAGTCCACCCTGTCAAGTTCCAGTAATATAAGTGATGATACTGATAAATTTCTTGGAATGAGTGAAATTGAGGATC TAAATATTTCTCAACGTGATCATCGTGCTGTAGATAACTTCACTGAAGGGATCTCAGATAATATTGCTCAGGAGACATCA GATGGTTTTAGGCAGGAAGCTAGTGAAAATTTTGATCAGGAACCACTTGATGTGAATGATGATGGTGCAAAGTTGATTTC TTCTGGTATATGTCAAGAGATGGAAACTGAACAGAATTACGTTAGTGAGGAGGCTGCTTCCACTAGCAACAATGGCAATA GAAATGCACACAATCTGAATGAAGAGTGGGTAGATTTTGAAGCTCCTTCAGTGGATGATTGTGATGCCACTGTCTGTGTT ACAAGTCACCGATTGGAAAAAGGTGAAACTGACTTGATTGAGGTGATTGAGGTAGAAGGCTCTGAGGCTGAACCTGTTCA ACGGCATGCACCAAATGCTGCAGACAGTCTTCAATTAGAACTTAATGCTTGCCCTTCTTCTACTGTTGGTGAAACTAATA ATGTTGAAGATAACATTGAGGGGAATATCGCACATAGCCAACATATTCAAGCATGCAGGATTGATCTTCTTGAGCAGACT ATTGATGATGCTAAAACCAACAAGGTATGATCAGTCCTAGATCCGTATATATTTGGATCTTACACTTTATAATGATACAT GGCAGGAGTTGTGAAAATGATATTAAAATCATCAGAGTGATAACTTAACATCTATTGATGATTAAACTAAAGAGTAAACG GTGTAGCGATGCACATATATTATTATTATGAATTAATTACAGTTTGGTTGTCGATATATAGTAAAACTTTAAAACTTCTA ACTCCGTATGATTGTTTGACATTAACGCAGAAAACCTTGTTTTCATCAATGGAATCTCTCATAAACTTAATGAGAGAAGT GGAACTTCAGGAGAAAGCTGCAGAGCAGGCCAATATGGAAGCTGCTACAGGAGGGTCTAATATTCTGGTCAGGGTTGAAG AGTATAAAACCATGTTGCTGCATGCCAAAGAAGCAAATGACATGGTTGTTATATTATTAGCCAAATCTCCATAGATTTAA AAGTTACTAAACTTTTTGCTGTTTCTATTTTACATGCGTGAGCAAAAAATTAATAATTTATCCTCAACTTTTTCTTTGCA GCATGCAGGAGAAATTTATGGAGAAAAAGCAATTCTGGCAACTGAACTGAAGGAACTTCAATCTCGTTTGACCACCTTGT CTGGTGAAAGGGATAAGTCTCTTGCAATTCTTGAAGAGGTGCTTTACAAATTACAATTGTGTATATTGGAAAAAAATTCA TCATACTTAGTCTACATGTTTCTACATTTCAGAATACCTAATCTTCCTGATTCACTGAGATTATGATGATAAGAATTGTT GCCTTTATAATTTATCACTTAATAAAAGAAATGTGATTTAACACTATTGTATATGAATGGAGAACTTCTTCCTTTGTGAT TGCTGTTCTTAATGTCAAGGAAATAAATTTATTAGCAATTTATTTTGGTTCATCTCCTGGTTCTGGCTTCCAGATGCGCC AGTCCCTTGAAGCTCGATTAGCTGCAGCAGAAATATTGAGGAAAGCAGCTGAGCGTGAAATGCTGGAAAAGGAGGAATCT GCGCGAAAGGCTCTTGCTGAACAGGAAGCAATGATGGAGAAGGTAGTACAGGAGTCAGCAAGACTACAGCATGAAGCAGA AGAGAATTCAAAGGTTCATTTCATTTCATTTCATGGAATATAGACAAGGCTCCTTAAAGTGAGCCCATTTTTGAAGTGAC CTAGTTTGGACATATCCCACCCATAAATCTTTAGTGGGTTAATATCAGGATACACTTCAAATTAAAATAAGGATGGATAC ACCATTATCTACTCACTTTACAGGCAAAGTCTAGGGAACCTTTTCGCTAATATTTTTTATCTCTTCTTTTTTCATCTCTG CAGTTACAGGAGTTCCTGATGGATCGTGGGCGGGTCGTTGATGTATTGCAGTAAGTTGTTGTTCTGTTTAAAATATACTT ATGTGTGTGCGTGGTGCATGTGTGTTGTGATACTTGATAAATAGTTTCAACTTTCAAGTTACTATATGAATGCATGCCAA CCTTTTTAATGTAAGTGTACCCGTGATTATGATCATGAGTGGTTTCAAGTTATTATTTTGATGCCGTCATCCTTTTTAAT GTAATGTATAACCATGTATATGATCATGAAGTTATATATTCATTTTGGGGAATTAGAGGTTATTTTGTAATTTGTTTTAA GATCTGTTACCCTAAAATTGCTATTTTAGTACAAATAGGAAATGATTCTTTTTTCTTCCCTTAACATACCTATTGGTGTG TTGGGACTTAGGATATGTATTGTGACATTCGTCATTGTATGATTTTTTTACAATTTCTAAGCTGCTATACTTTTCATTTA ATTTTGCAGAGGAGAAATTTCTGTTATTTGTCAGGATGTAAGGCTTCTAAAAGAGAAATTTGATGCAAATCTTCCTCTGA GTAAATCCTTCACCTCAAGCCAAACAAGTTGCAAGTTAGCTTCTTCAGGTTCATCCCACAGAACGGTAGCATCTGATGTG GGTTCTGAGCAAAGTGATTCATCTGAGTTACTTAAGATCACCAGCCCAGCAGCCTCCATTAAAAGCCTTTCTTCCAAAAG TGGGAATGAAGAGAGGCCCATAGCTGATCACAATGCGCTTCTTGATGATGGGTGGGATATTTGCGAAGAAGATGGAGAAC TACTGAATTCCGGAGTTTGGTGATTATTTTGTTCTGTCTAGAGGGCAAAACATAGAGGAAATAAACATTGGAATTCCTTG GATATCATTGAGTGGTAGTTAGCTGGATGTTTGGTTTATATTTCAGTTTTTAATGGTAGTTATATCATAATAGTAGCTTG AGCTCTACATCGGAATTGCATAAGTTCCACTTGATGAGGTTGATTGCTAATTTTTCCATATTTTGTACAGAAAACTAAAC TTCATAGGGAACCATTTTGAATATTTTCAACTTTGCATTTTTTACTAGTTGTTTAATTATGTTTGGTTTCCTATCTTATG CATTGGTATATGGTTTATCACCTTTATATTTTAATTACTTCGTCGTGTGGAATAATAGATAACCCAAGTGTACCTATAAA ACCTTGTGATATGGAGCAAATAAAATCGGAAATCTTTTAAGTATAGATGAATCTAAATAATACAAAGCAAACTGACCATG AATGATGATGTTGTTGAATTATAAAGAAATGTGCTTGTCATTTGTCAATGACATGCTGACATACCTCGTTCTCCTCCAAG TAAGTTGATTC
CDS sequence (LotjaGi5g1v0164000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCAATTCGGTTTTTAAATCATTGCTGGAGATATTTCCACAGGTGGATGCCAGATTATTGAGGGCTGTGGCTAT TGAACACCCAAAGGATGCTGATGTTGCTGCTGAAATCGTTCTTACTGAAGTCATTCCATCGATGTCTGTAAAATCACCCC CTGTTAATCCTCCACAGGATAATAGTCCTGTAGTCATGAACATGGAAGTTGAAAGCAAGGAGGAAGGAAATTTGTTGGTG CATGATCAGCTTTTTAAAGATGCCGATGTGGAAACTCCTTCTTCATCTTCACATTTGATATCTGAAGAAATCACCAAAAC TGCTGATGTGGGCACTCTTGGACTGGATCTGAATGTGGCTCTTGATGAGTCCACCCTGTCAAGTTCCAGTAATATAAGTG ATGATACTGATAAATTTCTTGGAATGAGTGAAATTGAGGATCTAAATATTTCTCAACGTGATCATCGTGCTGTAGATAAC TTCACTGAAGGGATCTCAGATAATATTGCTCAGGAGACATCAGATGGTTTTAGGCAGGAAGCTAGTGAAAATTTTGATCA GGAACCACTTGATGTGAATGATGATGGTGCAAAGTTGATTTCTTCTGGTATATGTCAAGAGATGGAAACTGAACAGAATT ACGTTAGTGAGGAGGCTGCTTCCACTAGCAACAATGGCAATAGAAATGCACACAATCTGAATGAAGAGTGGGTAGATTTT GAAGCTCCTTCAGTGGATGATTGTGATGCCACTGTCTGTGTTACAAGTCACCGATTGGAAAAAGGTGAAACTGACTTGAT TGAGGTGATTGAGGTAGAAGGCTCTGAGGCTGAACCTGTTCAACGGCATGCACCAAATGCTGCAGACAGTCTTCAATTAG AACTTAATGCTTGCCCTTCTTCTACTGTTGGTGAAACTAATAATGTTGAAGATAACATTGAGGGGAATATCGCACATAGC CAACATATTCAAGCATGCAGGATTGATCTTCTTGAGCAGACTATTGATGATGCTAAAACCAACAAGAAAACCTTGTTTTC ATCAATGGAATCTCTCATAAACTTAATGAGAGAAGTGGAACTTCAGGAGAAAGCTGCAGAGCAGGCCAATATGGAAGCTG CTACAGGAGGGTCTAATATTCTGGTCAGGGTTGAAGAGTATAAAACCATGTTGCTGCATGCCAAAGAAGCAAATGACATG CATGCAGGAGAAATTTATGGAGAAAAAGCAATTCTGGCAACTGAACTGAAGGAACTTCAATCTCGTTTGACCACCTTGTC TGGTGAAAGGGATAAGTCTCTTGCAATTCTTGAAGAGATGCGCCAGTCCCTTGAAGCTCGATTAGCTGCAGCAGAAATAT TGAGGAAAGCAGCTGAGCGTGAAATGCTGGAAAAGGAGGAATCTGCGCGAAAGGCTCTTGCTGAACAGGAAGCAATGATG GAGAAGGTAGTACAGGAGTCAGCAAGACTACAGCATGAAGCAGAAGAGAATTCAAAGTTACAGGAGTTCCTGATGGATCG TGGGCGGGTCGTTGATGTATTGCAAGGAGAAATTTCTGTTATTTGTCAGGATGTAAGGCTTCTAAAAGAGAAATTTGATG CAAATCTTCCTCTGAGTAAATCCTTCACCTCAAGCCAAACAAGTTGCAAGTTAGCTTCTTCAGGTTCATCCCACAGAACG GTAGCATCTGATGTGGGTTCTGAGCAAAGTGATTCATCTGAGTTACTTAAGATCACCAGCCCAGCAGCCTCCATTAAAAG CCTTTCTTCCAAAAGTGGGAATGAAGAGAGGCCCATAGCTGATCACAATGCGCTTCTTGATGATGGGTGGGATATTTGCG AAGAAGATGGAGAACTACTGAATTCCGGAGTTTGGTGA
Protein sequence (LotjaGi5g1v0164000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFNSVFKSLLEIFPQVDARLLRAVAIEHPKDADVAAEIVLTEVIPSMSVKSPPVNPPQDNSPVVMNMEVESKEEGNLLV HDQLFKDADVETPSSSSHLISEEITKTADVGTLGLDLNVALDESTLSSSSNISDDTDKFLGMSEIEDLNISQRDHRAVDN FTEGISDNIAQETSDGFRQEASENFDQEPLDVNDDGAKLISSGICQEMETEQNYVSEEAASTSNNGNRNAHNLNEEWVDF EAPSVDDCDATVCVTSHRLEKGETDLIEVIEVEGSEAEPVQRHAPNAADSLQLELNACPSSTVGETNNVEDNIEGNIAHS QHIQACRIDLLEQTIDDAKTNKKTLFSSMESLINLMREVELQEKAAEQANMEAATGGSNILVRVEEYKTMLLHAKEANDM HAGEIYGEKAILATELKELQSRLTTLSGERDKSLAILEEMRQSLEARLAAAEILRKAAEREMLEKEESARKALAEQEAMM EKVVQESARLQHEAEENSKLQEFLMDRGRVVDVLQGEISVICQDVRLLKEKFDANLPLSKSFTSSQTSCKLASSGSSHRT VASDVGSEQSDSSELLKITSPAASIKSLSSKSGNEERPIADHNALLDDGWDICEEDGELLNSGVW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 614 | 611 | 2.9E-147 | – | |
| PANTHER | 4 | 614 | 611 | 2.9E-147 | – | |
| Coils | 349 | 372 | 24 | - | – | |
| Coils | 409 | 429 | 21 | - | – | |
| Coils | 434 | 493 | 60 | - | – | |
| MobiDBLite | 547 | 576 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0164000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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