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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR16223
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 79 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0056309.1
n.a. PREDICTED: transcription factor UNE12-like isoform X1 [Cicer arietinum] gi|502115201|ref|XP_004495148.1| chr0 18287246 18291406 +
1 domain prediction
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Lj0g3v0105629.1
n.a. PREDICTED: transcription factor bHLH68-like isoform 1 [Glycine max] gi|356523767|ref|XP_003530506.1| chr0 45369687 45373493 +
1 domain prediction
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Lj0g3v0121629.1
n.a. PREDICTED: transcription factor bHLH66-like [Cicer arietinum] gi|502149955|ref|XP_004507723.1| chr0 54271090 54274268 +
1 domain prediction
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Lj0g3v0131909.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356500459|ref|XP_003519049.1| chr0 60133333 60136706 -
1 domain prediction
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Lj0g3v0195439.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356504823|ref|XP_003521194.1| chr0 95360866 95364098 +
1 domain prediction
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Lj0g3v0234069.1
n.a. PREDICTED: transcription factor bHLH110-like [Cicer arietinum] gi|502131451|ref|XP_004500989.1| chr0 121193598 121196395 -
1 domain prediction
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Lj0g3v0234069.2
n.a. PREDICTED: transcription factor bHLH110-like [Cicer arietinum] gi|502131451|ref|XP_004500989.1| chr0 121193598 121196395 -
1 domain prediction
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Lj0g3v0238249.1
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356544541|ref|XP_003540708.1| chr0 123557968 123560567 +
1 domain prediction
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Lj0g3v0283609.1
n.a. PREDICTED: transcription factor bHLH123-like [Glycine max] gi|356542232|ref|XP_003539573.1| chr0 147022124 147025887 +
1 domain prediction
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Lj0g3v0283609.2
n.a. PREDICTED: transcription factor bHLH123-like [Glycine max] gi|356542232|ref|XP_003539573.1| chr0 147022124 147025887 +
1 domain prediction
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Lj0g3v0283609.3
n.a. PREDICTED: transcription factor bHLH123-like [Glycine max] gi|356542232|ref|XP_003539573.1| chr0 147022124 147025887 +
1 domain prediction
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Lj0g3v0341529.1
n.a. PREDICTED: transcription factor bHLH123-like [Glycine max] gi|356546916|ref|XP_003541866.1| chr0 178975871 178979791 -
1 domain prediction
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Lj0g3v0347479.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356504823|ref|XP_003521194.1| chr0 182324513 182325668 +
1 domain prediction
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Lj1g3v4302180.1
n.a. PREDICTED: transcription factor bHLH130-like isoform X1 [Cicer arietinum] gi|502109029|ref|XP_004493549.1| chr1 50600373 50601211 +
1 domain prediction
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Lj1g3v4450440.1
n.a. PREDICTED: transcription factor UNE12-like [Glycine max] gi|356572238|ref|XP_003554277.1| chr1 52182634 52187167 +
1 domain prediction
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Lj2g3v0813500.1
n.a. PREDICTED: transcription factor bHLH68-like isoform 1 [Glycine max] gi|356523767|ref|XP_003530506.1| chr2 12799144 12804403 -
1 domain prediction
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Lj2g3v2572150.1
n.a. n.a. chr2 35341329 35345066 +
1 domain prediction
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Lj3g3v0478050.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356548947|ref|XP_003542860.1| chr3 5469965 5475915 -
1 domain prediction
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Lj3g3v0870610.1
n.a. PREDICTED: transcription factor bHLH130-like [Glycine max] gi|356525636|ref|XP_003531430.1| chr3 10699669 10702167 +
1 domain prediction
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Lj3g3v1717780.1
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356557515|ref|XP_003547061.1| chr3 21693706 21696839 +
1 domain prediction
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Lj3g3v1717780.3
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356557515|ref|XP_003547061.1| chr3 21693709 21696339 +
1 domain prediction
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Lj3g3v3248370.1
n.a. PREDICTED: transcription factor bHLH122-like [Glycine max] gi|356544541|ref|XP_003540708.1| chr3 40114990 40116751 +
1 domain prediction
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Lj3g3v3248370.2
n.a. n.a. chr3 40114994 40116751 +
1 domain prediction
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Lj3g3v3754390.1
n.a. PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449447621|ref|XP_004141566.1| chr3 45498178 45499498 +
1 domain prediction
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Lj3g3v3754390.2
n.a. PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449447621|ref|XP_004141566.1| chr3 45498178 45501346 +
1 domain prediction
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Lj4g3v0513460.2
n.a. PREDICTED: transcription factor bHLH113-like [Glycine max] gi|356521467|ref|XP_003529377.1| chr4 8792770 8797930 -
1 domain prediction
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Lj5g3v0308790.1
n.a. PREDICTED: transcription factor bHLH85-like [Cicer arietinum] gi|502125638|ref|XP_004499006.1| chr5 2953233 2955219 +
1 domain prediction
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Lj5g3v0962620.1
n.a. Uncharacterized protein TCM_004437 [Theobroma cacao] gi|508702928|gb|EOX94824.1| chr5 14678017 14682590 -
1 domain prediction
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Lj5g3v0962620.2
n.a. Uncharacterized protein TCM_004437 [Theobroma cacao] gi|508702928|gb|EOX94824.1| chr5 14679086 14682590 -
1 domain prediction
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Lj5g3v0962700.1
n.a. n.a. chr5 14716479 14725360 -
1 domain prediction
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Lj5g3v1412970.1
n.a. PREDICTED: transcription factor UNE12-like [Glycine max] gi|356576702|ref|XP_003556469.1| chr5 20965883 20967104 -
1 domain prediction
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Lj5g3v1412970.2
n.a. PREDICTED: transcription factor UNE12-like [Cicer arietinum] gi|502117932|ref|XP_004496017.1| chr5 20965883 20970578 -
1 domain prediction
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Lj5g3v1793440.1
n.a. PREDICTED: transcription factor bHLH111-like [Glycine max] gi|356533935|ref|XP_003535513.1| chr5 25508306 25511865 +
1 domain prediction
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Lj5g3v1793440.2
n.a. PREDICTED: transcription factor bHLH111-like [Glycine max] gi|356533935|ref|XP_003535513.1| chr5 25508306 25511865 +
1 domain prediction
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Lj5g3v2099550.1
n.a. PREDICTED: transcription factor bHLH84-like [Glycine max] gi|356574313|ref|XP_003555293.1| chr5 30048973 30050645 -
1 domain prediction
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Lj5g3v2099560.1
n.a. PREDICTED: transcription factor bHLH85-like [Glycine max] gi|356534283|ref|XP_003535686.1| chr5 30054807 30056273 -
1 domain prediction
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Lj5g3v2112180.1
n.a. PREDICTED: transcription factor bHLH113-like isoform X1 [Cicer arietinum] gi|502120333|ref|XP_004496925.1| chr5 30298531 30300950 +
1 domain prediction
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Lj6g3v0435130.1
n.a. Transcription factor bHLH83 [Medicago truncatula] gi|357492173|ref|XP_003616375.1| chr6 4142337 4144261 +
1 domain prediction
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Lj6g3v1078430.1
n.a. roothairless1/slippery [Lotus japonicus] gi|227345480|gb|ACP28172.1| chr6 12819541 12823619 -
1 domain prediction
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Lj6g3v1078430.2
n.a. roothairless1/slippery [Lotus japonicus] gi|227345480|gb|ACP28172.1| chr6 12821321 12823619 -
1 domain prediction
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Lj6g3v2132220.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH123-like [Glycine max] gi|356557631|ref|XP_003547119.1| chr6 24811606 24814887 -
1 domain prediction
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LotjaGi1g1v0092800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G37800.1 RHD SIX-LIKE 1; Swiss-Prot: sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086; TrEMBL-Plants: tr|I1M867|I1M867_SOYBN BHLH transcription factor; Found in the gene: LotjaGi1g1v0092800 LjG1.1_chr1 13632517 13640652 -
1 domain prediction
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LotjaGi1g1v0422000.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 LjG1.1_chr1 91597389 91600795 -
1 domain prediction
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LotjaGi1g1v0422000.2
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 LjG1.1_chr1 91597389 91600795 -
1 domain prediction
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LotjaGi1g1v0714000.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP11|C0JP11_LOTJA Putative basic helix-loop-helix protein BHLH3; Found in the gene: LotjaGi1g1v0714000 LjG1.1_chr1 128222582 128227953 -
1 domain prediction
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LotjaGi1g1v0714000.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP11|C0JP11_LOTJA Putative basic helix-loop-helix protein BHLH3; Found in the gene: LotjaGi1g1v0714000 LjG1.1_chr1 128224017 128226298 -
1 domain prediction
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LotjaGi1g1v0723400.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|A0A151TU87|A0A151TU87_CAJCA Transcription factor bHLH130 family; Found in the gene: LotjaGi1g1v0723400 LjG1.1_chr1 129474046 129478669 +
1 domain prediction
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LotjaGi2g1v0219700.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G29100.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68; TrEMBL-Plants: tr|A0A0L9VRW2|A0A0L9VRW2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0219700 LjG1.1_chr2 67502507 67507706 -
1 domain prediction
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LotjaGi2g1v0460200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84; TrEMBL-Plants: tr|G7K0X1|G7K0X1_MEDTR Transcription factor; Found in the gene: LotjaGi2g1v0460200 LjG1.1_chr2 95367559 95372096 -
1 domain prediction
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LotjaGi3g1v0058900.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|A0A0R0H312|A0A0R0H312_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0058900 LjG1.1_chr3 6189306 6195764 -
1 domain prediction
 –