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LotjaGi5g1v0164600.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0164600
Transcript ID	LotjaGi5g1v0164600.1
Lotus japonicus genome version	Gifu v1.2
Description	R3H domain protein; TAIR: AT1G03250.1 R3H domain protein; Swiss-Prot: sp\|Q2KIL7\|R3HD4_BOVIN R3H domain-containing protein 4; TrEMBL-Plants: tr\|I1L826\|I1L826_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:42101754..42105455) extracted from Lotus japonicus Gifu genome v1.2.

AGAATATTCCTTCATTTCCTTGATTGAAAATAGAGGGATTAAAAAAAAAAACTCTTTATCTGGGTTTGCATTTGTGATTG ACATTGTGCCCTAATCCCAAATTCCCAATCTACTTCTCTTCAATCTTCTCCGCGATCCGATTCCTAGATCTTCTTCTTGC TGCTGCAGAAGCTGCATTCGTCACCTAATCATGGTGCTTCTTCACAGAGAACTCGACCTTCTCCTCTCTACCCATTTGGC TGATCCTCTTAAAGGTTACATTTTTAATTTTTTTTTTCATTCATTTCTGAAATTATGTGCTTCTGGAGCAGTTGTTAAGT TTAATTCATTGTAAAAATTGATTTTTTCGGTCCAGATCGATGTTCTTCATGTTTTTTGAATTTATGTATTAATTTTTTGT TGAAAAAAATGAACAGGAGATGGTGCCAAATCCAAGGGGATGTCAATTGAGAAGAAGATTGAGTTCCTTGAGAGCTTCAC TGGAAAGGTGTGTGTGTATTACTTCCATTTACAAGCATAAGATTTATTACTTGAGCTCATTCTGTTATGGAAAATCATTT TGTTGATGTGACACTAGTAAGAGTATTTGTGTCTATTTGCTATGGATTTTTTTTTTGAGTACAGTTGAGAAACTGAATAA TATTGTCCCTTTGTTTATGAATACTTGTATAATTAAATCACATTTATTCATTTGCGAATCACAATATTAAACCGGTGATG GCGGTGAGGTAATGTCGAATTTGTCAGTAGCTTGGTGTTTTATGATTGAATGGTTTTCTTGAAGGTTTCAATGAGTTTGA AATCAAAATTTCTGATGGGTTTCTGACTTTGATCCCAAATGTTGTCTCTTGGAATTTATGGTTTTAACACACTTGAACTT GTTTGATAATTTTCGAGTTGGTATCCCTTTCCCGAATGAACTGAATGAATGTATTATTGGGTGAATTCATCAACTGCTTG TAATTTACAATGGAGGATACAGAACATTAGCTAACTGCAGTTAAACAATTCCTTTGTAAAAATTGACTACTACGTGGATC TTGCTTCCTTTTAAGGAATTTTGTGGCATTTGTAGATGCCTATGAGTTGAATTTTTTGTGTTTCTGTAATTTAATGCTTG CTAACTTCGTGTGTTTTTCTTTCCCCTTACATTATATGTGTATCTCATATGAGGCTGTTATTTGCTAATTGTTAGATACC AGTTTCATAAACTGGCTTATTGGAACTCACGCTTTTACTGATTCTGAGTGTTAACACTTTCAAAGAATTGAGTTCTCTGA TTCTATTATTTGGTTTGTATTAACTTGGGATCTTACCTGTTTCAGGTCACAAATCGAAGATCTCGTAGGTGGTTAAATGA TCGTCTCTTGATGGAACTAGTGCCGCGTTTAAATGCTGAGGAAATTAGAGGGTTGTTTGCACCACCACCTTGGGGTAATT ATCTCAGTCATCTTCTGTATGTGTTATTCGTTGAAGTCATGACATTTCGGTGGCTGCCTTTTTTATTCTGGCTGAGACTG TTTGCATTAGGCAAACAAGAATTTAATTCTTCCATTCACGAGAGGTTAAAGTTGTGTGGTGTTCTTTGTGTCCATCATCT GTTACAATTCAAGTGTATGGGAATGAAAGGGGTTCCATTCAAAATTTACATCAAATCTGTAGGACATATTAGTGATATTA TTTATTATTTAATGCTCGTTTTCTGATTTATTCTTTCTTTCCTTTTTTCCATATATTAGCTTATTTTCAGTTTTGATATT GTAATAAAGATTGGGTTCATATTACAGGTGATGAAGTTCCACCCTCAACATTTTCTATGACTAATGTGGAGGAGTGGGAC AGATTCCGGAATATAGACATGGATAAAGAGGTTATATTCACTTCCTTATTTGTTGATCCAGTGTTTAATTTTATTTACAG TTTAAGAAAGCAATTTAGAGCACTTGCAATTGGATTCAACCAACATTATTATCATTAATATTGGATTTTGATTTGCCAGC AATCCTCTGTTATAGTATCAAAGTTTCCCACTTTTCTTTAGCAGTTGTATAGGATTGGACTAGGTATCATTTAGGTTGTG ACTTGTGTTTACATTGTAACAGTGTTTGAGAGCTTGTTAGTAGTTAGTACAATCATTGCATGCATGACATGTATATGTGT AGTGGTTTGTGTGAGTATCATGTTCGTATGATTCTATATGTCTGCATAGTATAATCTCTTTGCTGATTGCTGACTGCTTG GTTGGCATATGAAATTACATTTTGATTATCTCTTAATGTGATGTGTTATCAACTACCAAGCATCTCACTATATGTTTTGT TTGTTTTGGTAGGTTAATATAATTCATGCCCTAGAAAATACCTTAGATAAGAAGAAAGGTCATGTTGATGCTGATAAGTT GGCAGTGTTGAATGCTTGGCATAGAGTTGATTGTAAAACAAGAGACGCACTTCGCCGCAGCTCGCTTTCTGAACTCATAG AGGGATATGAGGTATATATCTGAGTAATGATTACTACTCTCTAGCCCTTAATCTCCTTGTTTCACTGGATTATTCTTTCA GTTTGCTATAATGACAAATATGTTTCTTGCCATTTACATGGAACCTTGCCCCCCCCCCCCCCCCTTCTTTTTAGGAATGT GTACGGACTTTCATAACAGAGAAGACAGATGGAGATGTTCTTGAACTACAAATTCAGGATCCTTTTCATCGATTGTTGCT GCATGGAGTGTGTGAGGTAATATATAGTATACTGCTCCCTTTGTTAACTGTTTGATGCTCTCAGCTCTATTGTCTATGTA TGTGTCGAGAACATTGTGGCTGAACTTAGGAAAATGTTTTATGAAAAACAAGAGTTGGAAATGTTTTCAATAGAGAATAA CTTCCTGAAAAATATTCTGACTAGGAATTATCTACAGATTCTTATTGTGTTACTCTTGTTCATTTTCGCTAATGTGTGAT TCTAATTTTGTTGTAATATTTTTGTGTGCAGTTCTACAATCTGGCATCGGATACAGTGACAGATTTTAATGGTGGGGAGT CATCAAAGATGACAAAGATAAAGAAAAAGAAAAGGGGTTCTCCTGAGATCCTCAAAATCACACTGTCCCATTTTCTGAAA ATGACCAAGGAAGGAAGTTGGTAGTTTCTTCAGATGGAGCTGTTGTTTATTGTCCACTGTCCATAAAATAAATCCCTTAA TTTTAGTAGTGGATCTTCTCTTGAACATAAAGAGAACCTGTCTCTTGTTCAAGGATGAACAATGTACAATATTTAACATT TCTTTCCCTAGACTATCACTGTAAATTAGTTTGGCAAAACCTGTATTTAATTGGTGGATACCAGCAGTCAACATAAGTTG CTGATTGTTGGTTAGTTTACAATGTTGTAGTTCATTTGATTTTAATAAATTATCATGTCTTATTATTGGATTATCAGAGA TGCATCTCTCCCTCTCTTTTTTTTCGTTACCTTTTTTTGGTGAAAAGATGCATGTCTCTCTATATAGGTATTTCCTTGAA CCCGTCATGGAGCAAACCACACCGGTTCCTCTGGTTTTTGGCTAGTTTAATGTTTTGGAACTAATTGTGTCTAAATCAGC GTTGAGCAGAATTGGTTTTGCCAGAATTGATTTTGCCAGGATTGAATCTGATGGAATTGAGTATAGTAAACGTGAGCTAG AATGACATAGTTTATATTTAGG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0164600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGCTTCTTCACAGAGAACTCGACCTTCTCCTCTCTACCCATTTGGCTGATCCTCTTAAAGGAGATGGTGCCAAATC CAAGGGGATGTCAATTGAGAAGAAGATTGAGTTCCTTGAGAGCTTCACTGGAAAGGTCACAAATCGAAGATCTCGTAGGT GGTTAAATGATCGTCTCTTGATGGAACTAGTGCCGCGTTTAAATGCTGAGGAAATTAGAGGGTTGTTTGCACCACCACCT TGGGGTGATGAAGTTCCACCCTCAACATTTTCTATGACTAATGTGGAGGAGTGGGACAGATTCCGGAATATAGACATGGA TAAAGAGGTTAATATAATTCATGCCCTAGAAAATACCTTAGATAAGAAGAAAGGTCATGTTGATGCTGATAAGTTGGCAG TGTTGAATGCTTGGCATAGAGTTGATTGTAAAACAAGAGACGCACTTCGCCGCAGCTCGCTTTCTGAACTCATAGAGGGA TATGAGGAATGTGTACGGACTTTCATAACAGAGAAGACAGATGGAGATGTTCTTGAACTACAAATTCAGGATCCTTTTCA TCGATTGTTGCTGCATGGAGTGTGTGAGTTCTACAATCTGGCATCGGATACAGTGACAGATTTTAATGGTGGGGAGTCAT CAAAGATGACAAAGATAAAGAAAAAGAAAAGGGGTTCTCCTGAGATCCTCAAAATCACACTGTCCCATTTTCTGAAAATG ACCAAGGAAGGAAGTTGGTAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0164600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLLHRELDLLLSTHLADPLKGDGAKSKGMSIEKKIEFLESFTGKVTNRRSRRWLNDRLLMELVPRLNAEEIRGLFAPPP WGDEVPPSTFSMTNVEEWDRFRNIDMDKEVNIIHALENTLDKKKGHVDADKLAVLNAWHRVDCKTRDALRRSSLSELIEG YEECVRTFITEKTDGDVLELQIQDPFHRLLLHGVCEFYNLASDTVTDFNGGESSKMTKIKKKKRGSPEILKITLSHFLKM TKEGSW

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32019 View details on PTHR32019 Search for proteins/transripts with this domain View external data on PTHR32019	4	246	243	3.0E-88	IPR039629 Show description in modal box View details on IPR039629 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13902 View details on PF13902 Search for proteins/transripts with this domain View external data on PF13902	31	151	121	5.2E-29	IPR025952 Show description in modal box View details on IPR025952 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF82708 View details on SSF82708 Search for proteins/transripts with this domain View external data on SSF82708	137	222	86	4.71E-11	IPR036867 Show description in modal box View details on IPR036867 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0164600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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