Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0165100 |
| Transcript ID | LotjaGi5g1v0165100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenazine biosynthesis PhzC/PhzF family protein; TAIR: AT1G03210.1 Phenazine biosynthesis PhzC/PhzF protein; Swiss-Prot: sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283; TrEMBL-Plants: tr|B7FJ84|B7FJ84_MEDTR Phenazine biosynthesis PhzC/PhzF family protein; Found in the gene: LotjaGi5g1v0165100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42184376..42188532) extracted from Lotus japonicus Gifu genome v1.2.
GAAGTTGGCGTCAATGGCCCAGTGAGTAGTCAGTTCTACACGTGATCACATGTCGGTCACAACATAGGTATCTAGTGTTA GATTCAGGGTTGAGGGAGTTTTAGCACTTCTTCTTCCTGTTCTTAACTCAATGGCAAAGAAACCACTGAAATACTATGTG GTAGACGCGTTCACTGATTCAGCATTCAAAGGGAACCCTGCAGCAGTGTGCTTGTTAGAAGAAGACAAGGACGATGCGTG GTTGCAAGCTTTAGCTGCAGAGTTCAACATCACTGCCACTTGTTACTTGACTCGCATTCATTACTCGCTCAATGGAGCTT CTATTAATCCATGTTTTCGTCTCAGATGGTTTTCTCCACTTACTGAGGTACTATTGTTATTTGTATGTAATATGTATTAT GGGAAATACTCTTTTTTCAATACTCACTTGGTCACTGATATTGATTGAAATTTATGTGAGTTCTACTAAATTGCATGTGA GGCCTATCCATTCTACATTTCAATCAATCAATGAAAAAGTGCTCTGGAGAGCGAGTATTAGAGCAAGTATTGCTAACATT TTTCATGTATTATTAGCGCAAAGCATCCACATTTTGATTTTGTTTTGCTTTAAACCACATATATCCTCGACGTCTTTGAA ACGGGTTAGAGCGCTATGAGTAGCAGTCGGCAGAACTCACTCTACCATGTATTTAAAGTCGCTGCTGCATTCACGAAGAC TCAAATATGAGACATCAGCGTAAATTAGAAGACAAAGAGTGCACACATTAAATGCACTGTCACTGTTTGTTTAAACCATT AACATTATCCATCTGGACCTTTAAATTGTGCAGGCTAAACTTTGTGGCCATGCCACATTAGCGGCTGCACACGCACTCTT TTCATCTGGTTTGGTGGATACAAGTAATATTGAATTTGTGACCCTGTCTGGGCTATTAACTGCAAAAAAGATCTCAAACT TGGAAAAGGGTGAAGCTCATATTGAATTGGATTTTCCTGCTGACCCTATTGAAGAATTAAACTTTGATGGGACTGAACAA ATTTCAGTGGCACTCAAGGGTGCTTCTATTGTTGATATAAAGAGGACACATAATGTGGATGACTTACTTGTAATTCTTAA ACTAAATCTACTCTTTTTCATACCTATTATCTAAAATACACATGAATTTCTGCTTAATCTTTATTTATCCTAGGTTGAAG TCACATCAGCAAACAATATAATCGAAGTAGAGCCACAATATGATGAAATAGTTAAATGTCCTGGAAGAGGGATAATTGTT TCAGGAATTGCTCCTCCAAAGTCAGGATTTGACTTCTACACTCGATTCTTCGTCCCAAAATATGGAGTCAATGAGGTAAG TGGCTGAGAACTATGACTATTAAGGTTTCTCCAATTGCATTGGCAATGTGTCCTTAATTATGCAAAACTTTGATTTTGAA CATAAAACATAGATGCCATTTTTTAACTGCATAATCCCATGGAATGCTAGTTTCATTCTTTCCTTGAAGCCTGTGTGGTT TATGAGTAATGCACAATGAAAACAGAATTAATGAGATGATGTTCTATTCAGGATCCTGTTTGTGGGAGTGCACATTGTGC CTTGGCATCCTACTGGAGCAAGAAGCTGGGGAAGTGTGATTTTAAAGCTTATCAGGTACTCTATTTTCCACTTATTGTGA TTACCTTTGTCATTGTCTCACTAACCTATAGATTCTATTTGTGCAGGCATCGCCCAGAGGGGGAATTCTCAATATTCATC TTGATGAGGAGAACCAAAGAGTGTTCTTGCGTGGTACGGCAGTTACGGTGATGGAAGGGTGTGTCCTGGTCTAGGCCGAT TCCTAAAATTACAAGATATATAGTTTCTCCAACATCTGATGATAAGAATTGTAGTTTGAGTACTGAGATGTTATTACTTA ATCACATTAAAAAAGAAAAACCTCTCAGCATTCTGTATTTGATGCACACAAACTATAGGAGTTCTAACTTAAGATTGAAT CAATCCTGGGTGTGCAGTGTAATAATATTTGTTAAGTTGAATAAATTGGTCTAGTCATTGGTTTTTTTAGCAGGCATTCT CTTGAGGAGTTGTTATTGATGCTTGGAATGGATGTTATTGTCATTGTTATTGGACTAGTCATGTGATCTATTTGAACTTC TGTGTAACATTAATGCAAAGTCCCAAATGCCATGATATCAGGTTAACAAATCACCTGAAATTGGATTTCCATACCTTCTT TTTTGGTGCAACAAAGGGCTGCAAGCTACAAACAAAGAAAACTAACTCAAAGCTCTTCCATGGAACTAGGCTCTAGAGGA GTCAGCTACCAGTGCTAGGCAAACAAAACCCAGGACAACATCAGAAACTTTGAACTCAACTAGCATCATTAACAAACCAA ACCAAATTTAGCCAAGAAGTTATCAATTCCATTACTCCTTTGCTTCTATGAAATTCAGATTCCACATCGATTCTGTAGAT ATTTTGCTCAACTGAATGAACAATCAACCGTTTACTACTTTATATAGCCTAATCTTTCAAATCTGATGTGAGACAGTAGG ACTTGATGTGAGATCCTTTGAGGCATAAAGCATGACCAGTGGTTGCTTTCAAGTATCGAAAGGCATGATAAAGAGCATGC ATATATGAATATGAAAATCAGTGGGAGCTTGCAGGAGGTACTGAGATACTTTCTTTACAGAAAATGCCACACTAGGATGA ATAGTGGATTAGTACTGAAGAGAACCTACCAGCTAGAGGTAAAGCTTGGCATGACATGTGTATGGTTGTCTTTCTAATGA CTTTACTCATTTTACAATTAGAACATTACTAATTTTTAAAATTGCGGTATAAGGTTCCATATTGAAATAAATAAAAATAA CACAAAAGGAGGATTGAATTGTGTTTATCAAATTCTCTTCTAATTTTAAGAATTAATGAAACTTTGTTTATCAAAAACTT AGCAAACAAATGTTGATAGAAAGAATATGCTGAAAGTAGATTCTGAAGTATAACACATGTTGACAAGGTGTAGAGTGCAA GCGGAGAAAGGTTCTTAAGCCTAGAGTGATATTTTTATAACTTGGTTCAATTCCCTGGTTAGATATAAACTGAAGTGAAA GAGATAAAAGATTACATAACGATATTTATGTCGGTTCACCTTAAATCACTGAGGTTAAGTCTAATCCTTTTAGAACTTAA GCCCCTGTTTGGTTCAAAGGAGGGGAGGGGAGGGGAGGGATTTTAATGGAGGGGAGGGGAGGGGAGGGGAAGGGAGGGGA GAGATTTTAATACTTATTACGTTTGGTTCATAGGAGGGGAGGGGAGGAAAAATAACTTATTTTTATTTGATTCATGAGGA GAGGGAAGAGATTTTATGATTGAAATTACTTTTATACCTTTTATATATTTACTTGAATTTAACAAAACAATATGTGGTCT AAAAAAAACAACACAATATAACATCTTCATCATCAACAATTATTCTTCCCAAAGATAGTATAGCAGCAGCCAGGATGGAA TATATAATATTGGTGTGGTGGAACAGAAGAAGCAAGAAGAATACCCGAATAATGAGAAAGCAAGAGCAAGTGGGGGGAGG CGTTGGCTGATAAATGAATCTCCTAATTTTTTAAACACCAAAATGGAATTCAGCGATGACATAAAAGACAAGCATAAGAA GAAGGTCCCTTTTTTCAATCTTGTAGAAGAATGAAAAGCAAAGCCTTATCCTCATACTCATGCCCCTGTTCCTCCCGCAC AGTTCTGTCAATACTCACCACAATCTTTCTCATTTTCATACCAATTGTCTCGCTAAGCGCCACCAACAACCATGCCCAGT GCCCACCATCTTCATGCGGAAAAATCCACAACATATCGCACCCGTTTCAACTCAGAAGGAGGTGGTGGAGAGAGACCGGA GAGGGGGGCAGCGGCGGTGGTGGAGAGAGACCAGAGAGGGTGACAGCGGCGGTTGGTATGAAGAAGGAAGGAAATAAAAG AAGTGAAATAAGAAAGGGAAACCCGAGGACAAAAAATTGAAATTTTTAGATTTGTGCAAGGTTAATTTTGTCCAAAATTT ATTTCCCCTCCTAATTCCCCCACTTTTGGGGGAACAAAAAATTGAGGTTGGAGGGATTTTGCTCCCCTCCATTTCCC
CDS sequence (LotjaGi5g1v0165100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGAAACCACTGAAATACTATGTGGTAGACGCGTTCACTGATTCAGCATTCAAAGGGAACCCTGCAGCAGTGTG CTTGTTAGAAGAAGACAAGGACGATGCGTGGTTGCAAGCTTTAGCTGCAGAGTTCAACATCACTGCCACTTGTTACTTGA CTCGCATTCATTACTCGCTCAATGGAGCTTCTATTAATCCATGTTTTCGTCTCAGATGGTTTTCTCCACTTACTGAGGCT AAACTTTGTGGCCATGCCACATTAGCGGCTGCACACGCACTCTTTTCATCTGGTTTGGTGGATACAAGTAATATTGAATT TGTGACCCTGTCTGGGCTATTAACTGCAAAAAAGATCTCAAACTTGGAAAAGGGTGAAGCTCATATTGAATTGGATTTTC CTGCTGACCCTATTGAAGAATTAAACTTTGATGGGACTGAACAAATTTCAGTGGCACTCAAGGGTGCTTCTATTGTTGAT ATAAAGAGGACACATAATGTGGATGACTTACTTGTTGAAGTCACATCAGCAAACAATATAATCGAAGTAGAGCCACAATA TGATGAAATAGTTAAATGTCCTGGAAGAGGGATAATTGTTTCAGGAATTGCTCCTCCAAAGTCAGGATTTGACTTCTACA CTCGATTCTTCGTCCCAAAATATGGAGTCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGCCTTGGCATCCTACTGG AGCAAGAAGCTGGGGAAGTGTGATTTTAAAGCTTATCAGGTACTCTATTTTCCACTTATTGTGATTACCTTTGTCATTGT CTCACTAACCTATAGATTCTATTTGTGCAGGCATCGCCCAGAGGGGGAATTCTCAATATTCATCTTGATGAGGAGAACCA AAGAGTGTTCTTGCGTGGTACGGCAGTTACGGTGA
Protein sequence (LotjaGi5g1v0165100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKPLKYYVVDAFTDSAFKGNPAAVCLLEEDKDDAWLQALAAEFNITATCYLTRIHYSLNGASINPCFRLRWFSPLTEA KLCGHATLAAAHALFSSGLVDTSNIEFVTLSGLLTAKKISNLEKGEAHIELDFPADPIEELNFDGTEQISVALKGASIVD IKRTHNVDDLLVEVTSANNIIEVEPQYDEIVKCPGRGIIVSGIAPPKSGFDFYTRFFVPKYGVNEDPVCGSAHCALASYW SKKLGKCDFKAYQVLYFPLIVITFVIVSLTYRFYLCRHRPEGEFSIFILMRRTKECSCVVRQLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 254 | 254 | 6.5E-104 | ||
| Phobius | 1 | 254 | 254 | - | – | |
| SUPERFAMILY | 6 | 256 | 251 | 7.86E-58 | – | |
| TIGRFAM | 7 | 244 | 238 | 9.1E-27 | ||
| Gene3D | 8 | 134 | 127 | 2.9E-75 | – | |
| Pfam | 11 | 253 | 243 | 2.3E-72 | ||
| Gene3D | 135 | 254 | 120 | 2.9E-75 | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 255 | 275 | 21 | - | – | |
| Phobius | 276 | 304 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi5g1v0165100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…