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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0166700 |
| Transcript ID | LotjaGi5g1v0166700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase Der; TAIR: AT1G03160.1 FZO-like protein; Swiss-Prot: sp|Q1KPV0|FZL_ARATH Probable transmembrane GTPase FZO-like, chloroplastic; TrEMBL-Plants: tr|G7IED3|G7IED3_MEDTR FZO-like protein; Found in the gene: LotjaGi5g1v0166700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42541078..42542554) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAGAAAGCTGCACCTCTGGTGATCTTTTAATTAAAAAATTTGGTATTTGAAATGATTCTTTTTTCTTCCCAATTCTG TATTTTGACTAGTATATTGTTCACTTTGTGTTGAATTGGGATTGGTTTCAAATGACAGATGGAGGAGGTTTCACTTCTTG ATGACGCAGTTTCTCAAATTGATGAGCCCTTCTTACTGGTTATAGTGGTAATTGTGTGCTGAATCTCAACAAATTCTGGT TCCTGAGATATACATTGGTATTAGCTCTAAATTTCAAAAAGAAAATATTCTGTTAGTACATCTAGTTAAAAACTAGTTAA CTAATAAGTGCTATTTATCGTGAATTTTTCTCATCATTGTTATTCATTGCTCTGCTTTTGATTAACCTGAATGTCTGATT ACTTCCATATATAAATAACCATTTGCTAGAGCGTTGATGCATGGTTGACTTATCGGGAGTAGTTGGTTTTTCTGTCCTTG CAAACTTTAGCTATCTTTGTTGTATTTTGTTACTTGTTAGTCTTATTCTACTTGGAATAATGCAACATGTTTGGTTAGCT GAGTAGCACGTTGTTTGAGGTTACTGTAAGACTTGATTGAGGCCATGGCTGCTGTTACTCAATGAAATTTAGGAACTGGC TAAATTTCACCGTAGGATGGATAGTTATTTGGTTCTTGTGCTTCCCAACTCCCATTATGATTTATTATAAACTTTCCAGC TCAAAATGCCAAATCAACTGATTTCTATATGGACTTGATAGAAATGCCAGAAAGTTCTGAATTTGACACAATATTTCCAG GGGGAATTCAACTCTGGTAAATCTACTGTAATCAATGCACTTCTTGGAGAACGATATCTTAAAGATGGGGTTGTTCCAAC AACTAATGAGATCACGTTTTTACGATATACTGACCTAGATATCGAAAAACAACGTTGTGAAAGGTTTCCAGACGGTCAAT ATATTTGCTACCTTCCTGCTCCAATTCTAAAAGAGGTAAGTCACTGGATTTGGTTTTCTCCATTTCTTTTGGTACTTTTC CTATCATCAATATATATCAGATTGTTTTTTCTTGCCAAAAATTTCTATTTGCGGTTAGAAATTCCCTCAGTAGTTAATTT TTTTTTTTAATACAGATGACCATTGTTGATACACCAGGAACTAATGTGATTCTACAGAGGCAGCAGCGTCTTACGGAGGA ATTTGTACCCCGTGCAGATTTACTTCTTTTTGTTATTTCAGCCGATCGCCCTTTAACTGGAAGTGAGGTATGATCAGTAA TTTTTGTGGATAAGGCATACTACTCTCTTGCTTACTGTGGTTCTGGTAATGATATGATGTGTTGTTTTATGTTATATTTT AGGTTGCTTTTCTTCGTTATTCACAGCAGTGGAAGAAGAAAGTGGTCTTTGTTTTGAACAAAGCTGACATATATCGGAAT AATCATGAGGTATAGGGCCTGTTTGTGTAAGCTTTAG
CDS sequence (LotjaGi5g1v0166700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGTTTCACTTCTTGATGACGCAGTTTCTCAAATTGATGAGCCCTTCTTACTGGTTATAGTGGGGGAATTCAA CTCTGGTAAATCTACTGTAATCAATGCACTTCTTGGAGAACGATATCTTAAAGATGGGGTTGTTCCAACAACTAATGAGA TCACGTTTTTACGATATACTGACCTAGATATCGAAAAACAACGTTGTGAAAGGTTTCCAGACGGTCAATATATTTGCTAC CTTCCTGCTCCAATTCTAAAAGAGAGGCAGCAGCGTCTTACGGAGGAATTTGTACCCCGTGCAGATTTACTTCTTTTTGT TATTTCAGCCGATCGCCCTTTAACTGGAAGTGAGGTTGCTTTTCTTCGTTATTCACAGCAGTGGAAGAAGAAAGTGGTCT TTGTTTTGAACAAAGCTGACATATATCGGAATAATCATGAGGTATAG
Protein sequence (LotjaGi5g1v0166700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVSLLDDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKDGVVPTTNEITFLRYTDLDIEKQRCERFPDGQYICY LPAPILKERQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKVVFVLNKADIYRNNHEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 148 | 148 | 3.4E-83 | – | |
| SUPERFAMILY | 11 | 145 | 135 | 6.47E-25 | ||
| CDD | 18 | 145 | 128 | 6.8233E-39 | – | |
| Gene3D | 20 | 80 | 61 | 3.6E-12 | – | |
| Pfam | 20 | 61 | 42 | 8.1E-11 | ||
| Gene3D | 81 | 148 | 68 | 7.4E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0166700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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