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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167500 |
| Transcript ID | LotjaGi5g1v0167500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome recycling factor; TAIR: AT3G63190.1 ribosome recycling factor, chloroplast precursor; Swiss-Prot: sp|Q9M1X0|RRFC_ARATH Ribosome-recycling factor, chloroplastic; TrEMBL-Plants: tr|I3S931|I3S931_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0167500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42686823..42692614) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGACAAAATTGTTATCCACAAAGACAACCCAACACAACACAAAGCAAGCATAGGGTGCCTCTCTCTCTCTCTATCCC TCTCATGGCAGCAACCTCCTTCTCTCCGGCAACTCCTGTCCGCTCCATCTTCCAAAACCCTCCCAAAACCACTCTCTTCC TTCCTGGTAACTCTTCTCTTCTCTCCCAATTTTACACTTCATTTCTACACACAATGCTAACTCGTTTTCAATTCCATTCT TCATACAGAGTCCTTTTATGGCGTCAAACGCTCTTCAATCTCTGCTTCAGCAAGCTATGTCACTCTCAAGCTCTCTCGAA CCCTCACTCTCTCTGCCAAACCCATCCTTTCTCACAGGAGGTAACTCTTCAACTTCATTCACATTCTCACTCTGTTGACT GTTTTTCACTGCTTCTGTTCTTACTGTTTTTGAAATACCCAGAATGGGAATTGTGAGGGCTGCTACTATGGAGGAAATTG AAGCTGAAAAGAAAGCTATTGAGAAAGATGTTGTAAGTTTTTCATTAAAGTTTTCATTTTTCCTCCTCTTGTATAGTGTT TTTTTTAAAGAAAGCAATCCCCTCTTATATAATGTAGTAGATATGAATGACCCTTTATGTTATTTAACCAATTATACCAA AAGTTTAAGTATTTGGGTGATTACATATGGTTTTATGTTATATTTCTAACAAATTCTATGATATCTCTCTCTATGTATCT ATTGTTTACCATATTTCCTTTCCTTAGAGGAACAGGATGGAAAAGACTATTGAAAATGTTCGTTCGAATTTCAATTCCAT AAGGACTGGGAGATCAAACCCATCTATGCTTGACAAAATTGAGGTACTCCTGGCTTAGCTTGTTACTCTTTTAATCTGCA TCTGCTTTCTTGTCCTGCTAAATTCTAGAAACTAGAAATTGTTTATTGCATAGAAATGTTTTAGTTTATTGCTCCTGGTT CAGGCTAGTTGGGCTTGCATGCTGTGCAATTTATTTCTTGCAATACTCATTAAATGTTTGAGACATTTTGATTTTATAAG AGTTCCCTCGTGAATGATACAATTTTTTTTTCGTTTTAATGAATTCAAATGGAGTTTAGTTGTTGAAACTATCTACCATT CTTAAAATTGTGTACCCTTCAATTCAAAGTTAATGCGCAGTGATTTTTTTCTTGCACGTTTACTTTTCCTTTCGTGACCC TTTGATCTGATTTTTAGCTTTTTCCTTTACCATTTGTTTCCTTGCAGGTTTTCACTGTTGCTTTGTCTGATAATTACTTA GTTCTTTAGTATTACTAAAATAATAAGACTCTTGGCGGCCTCCAATTGAGTGTTTTTCACGGCCCCATCAAATTGTACAT TTGATTAGTTTAGTTCACATTAACTTACATAACAATAAAAACTGGAATGTCAATGTATCAGCAGTATAAATGCTACACTG AAGTGATCACATGTACTTGGTTTGATTTTAAAAGAGAAATGTCCTGTCGATGAACTATTCGATAACATGTTCTAGGTGGA ATATTATGGTGCTCCAGCTAGCCTGAAGAGCATTGCTCAAATTAGCACTCCTGATGGCAGTTCTCTTTTAGTACAGCCGT ACGACAAATCAAGGTACTTTATGCATTATAAACCAGAGAGGCTGATAAGAAATATGAGATGATCTTACCGAAGCTAATTG TACACTTCTATTCTGATCATATATGGCATGCTTATGATGATTTTTATAGCTTAGTTCTTGTACTCTGCATATTAGTAATT GATTGAGAATTATGCATGATTGCATATATGTGCATCTGAGGTATTCTTCCATCAATACTTCAAAATATTATTTTATTTTT AATTATATGTGTTGATGTGATATCTAGTATGTAGCAAACTTTTGGTTATTACTTATTAATATTGTTTTTCAGCTTGAAGG CTATAGAGAAAGCCATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAAGTGATACGGCTGAGTATCCCT CAATTGACATCTGACAGAAGAAAGGTATTTTCCATTTCCACTGATGCTGTTGCCTCCAAGTTCATTGAATAATGTGCTAT CTTGTAACTTCACATTGTTTTCTGTGAATTGCATTCATGCACCTTCACTTACTGAAGTATTATTCCTAGTTGGTTTTCAT TTCCTTTTAATTATTTAACAAAATGGAATAAAAGTGATCTCTCTAGGAAGAAGTTTATTTAATATTCCTTGCCACGACTC TAATAGAACTGTTTTATTTATCTGTTTACTTTTATTAAGAGATCCATGCCATTTTTATATAATGGTTCTTTATACATAAA TTCTACGGAACCTTTTGAATGTCTAAATGAATATGTGGATTTCATGATGTTATTGGAATAGTTTAAGCTAGAACTTCTCT TGGTTTTTCTTTCCAGGAACTATCAAAGGTAGTGTCTAAACAAACTGAAGAAGGGAAGGTACATTGGCTAAATTTTTTAT GCTTGAGATAATGGACTAACTCTTGTTTATTTCCAAGTTCAGGGGTTTACTCTCCTTGTAACTTCTTTCATTGTTAGAAT TTAAGTGGGAACAAACTTCAGCCAATTCTTGAGTTGTAAATACTAATTATTGTTCTGTTTCCCCTTTTCCTGAATCTTAT AGTGGTAACCAGTTGAGGATTAAAAGTTACTAATGTCATAGGTTATAGTTAAAAGCACTTATGTGTGAAGAGTGCTTATT GCTTGGTTGTAAACTGTATTATTGCTTTGTAAATAATATAGCTTTATATGTTGATGCTTCAAGAATGAACGTTTTGGTTT AATTGCAGTTGTTTGTAATTTCCTTTTGAATGATTGGGCATTTCACTTTTTAATAGGTGGCTTTAAGGAATATAAGAAGA GATGCATTGAAAGCTTATGAAAAACTTGAAAAGGTTTAAATCCTAAAATCACTCACCTTTTCTGACTCTCTTTAATTTCT TGTCTGCCATTCTTCCTCCCTTTTTCATATTGTTTTTTTTTTTGAAAGTTTTTTCTTATTGTTAGATTTCATCCTTTTGT TAATCATTTTGTTGGAATTTTCTCATAGGAAAAAAAGCTTTCAGAAGATAATGTGAAGGATTTATCAAGTGATTTGCAGG TAACTTGATGCCACTCATACGGTACCATGTACTTTTAATCCATTTAAAATTCCTGCTGCCATCTCTCTTCTGTTTTTGTC GGGGATGGGGCAATAGTTTGAAATACAATCACAAATCACCTGCAATGTGCAATAAACAACGTGACAAAAATAATTATTCC CCTGCTCCCCCAAAAAGTGTGTAGATTTTGTGCACTGAGCATTTGTAACATTCACAGAGTTGCACATGACTGATATGGTG AGAAAAAGAATACAATGTTCAATTCTGTATGTGTGTGTCAGAAAATGGATTTCATTCTTTGAAAGTTGCAAGCGTATGAC AGTAGTTGTTGTCTTTATACCTTGAGGATGTTATACGTATTATATTGCAGCAATCAACTTATTGTTTTGCCTCCATTCTA TTCAATATCAGTGAATTTTTTTCTTATCATATTCAATTTTACTTTATGGTTGGTGAATGATGAATTTATAGCCAAGCTTA TTATTTAAAACTTAAAATTGTCAATTTCCCGGATTTTACCCATGTTAGTTATGTTATTTTGTAGAAGCTGACAGATGAGT ACATAAAGAAGGTGGAAACCATCTACAAACAGAAAGAAAAGGTATTTATATATTCCCACTTAACAGTATGTTCTTTAATA GCATACAACAGATGGGAGTTTAATGAAATGCTTAAACAAGCGTTACATGCACAAGACCAGTTTCCTAATACTACTTTAGT AATTACTTCCATGATTTGTTTCCCCTTTACACGTCCACCTCATTAGTCAGTATGTTCTGGGAATTAGCATTCTATAGGTC TATAAATGATGCATCATTTGGACACAGTGTAATGAGTAAAAGGAGCGAGTCCCACTTGTGGACTAACTTGGGTGCTACTG ACTTAACCTTGGTCAAGATTAAGAACTTTAGAGATTACATTCTTGTGGTTGGGAAAGAAGGATATCAACATACAGGAAGT TGTTGTTGATTATAAATACATTTAGCGAAGTCAAATAATGCATGATTGTATAATAGTTATCAGCATTACATTTCCTAGTT TTATTTTCTTTACTCCCTTTTGTATAATTATTTGGGGTTTGACAAATTACTTCTTCCTATCTTTCAGGAGTTGCTGACAG TTTGATGCTTTGATGTACAAAGTGAATGTATTGAGTTCTATCTAAAGAAGTTCAAATTTTGTATCTACTTTATTCTGAGT CAGATAATGGTGTATATGTTTCTTTGTTACCCAGAAGATGACTTTTCTGCTAAATAGATGCTTTATCAAATTGAAAAGGT GAGTGCATGCGCATAAATTGAATTTATTTATAGCATCATTGAACTTGGGCCCTTACAGGGTAGATATGCTAATTTTGTAA CCGGTGATGAATAGTTATAATTCAACGGTTTGATTGATAAAATATATTTTTCTAAGAAGTTATTGATGGTGTAAGATTAC TGAAGTCCTACACCGGTGTAAGTTGATTCCTTCCATACATAAAAAATTGAAGTTATTTTTGGGTAGTCTGATTGTGTACA GGAGGGAAGAAGTACAATTGCTTTAGTTGCTCTAGAGAGGTGGAAAAAGAAATTGAGATGCTTTTTGAATTCAATTTTGG CTGCGTATGTTGCTGAAATCTCCCTGGTTCGAGAGATTAATGATTTCTTATGGAATCAAGGTGCTTGCTTGAAGTTGGGG CATGTGATTAGACTGAAGGTTTTGGAAACACTGATCAGCTCCAACTAGATGAAGGGTGATGTGTAAGATATAGATTGTGG ACATGATTCTGTTTAATCTTTGGAGAACCCACAAGAGTATCCCTTAAGGCAGGAGTTTTGAAAAAGAGTGGATTTGTGGT CCTTTGTTTGCTTGGGTGATGTTTCAATGAAGTAGGGAGGGTGGAAAAGGTCGGAGGCGATTATAGTGCTCCTGGTTGTG TTGTGGCAGCTGTTACTTTTATGCTAGTTTTGAAGCCTTTGGGGGTATTAGGAGTGACAGCTTCTTGCTAGGAGGTTGGA TCTTGCGGATCAGTTTGAAGGTTTTGGATCTGTTACATAAAGGATGAGGTAGAGCTTTTAGATTAATCTTAGGCTTGTTC ATAATAGGAGGTTGTAACAGTAACAGAGAGGTATCAATTCGAATGGGGTTTTCTCTGTTTGCTAGTGGGTGTTTATGTTT TCTATGATGCTCTTTCGGAATCTTGCCTAGTCTATTAAGTGTAAGTTGGAAGTGGTGGTTTAGGTTGGTGTTTTTGGTTC TTTAGGTGGTCTATTGGTGTTGAACTCTCTTGCTCTCTAATGATTTTGAGCTTTGTATGTGGTAGGTGAGTGAATTTTTT TAGGTGAATAAATTCATGGGGTCGCCTAAATGACCCTTGACAATTTCATTCTTTTGCTTTCGAATATATATTATGTATGT GTGTGGAAGAGATCAACGTACACCGGTGTAGGACTTTAGTCATTTTAAAACGTTAATAATTTTAGTTAAAATAAGTTTTT TATCAATTTAACTGTTGAATTTAACAATTACTTGTATTGAGTCTTATAAATCTAAATAACTATGTTTATGATCAAATGGT TTTTATTTATATATTTCAAAATGTCTATATGATGATTATAATTGATGTATCTAATTTTTTTTTGGATTGATGTAAAAGTG TATAAATATAATTTATGGGGCGCGTTTACTAT
CDS sequence (LotjaGi5g1v0167500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAACCTCCTTCTCTCCGGCAACTCCTGTCCGCTCCATCTTCCAAAACCCTCCCAAAACCACTCTCTTCCTTCC TGAGTCCTTTTATGGCGTCAAACGCTCTTCAATCTCTGCTTCAGCAAGCTATGTCACTCTCAAGCTCTCTCGAACCCTCA CTCTCTCTGCCAAACCCATCCTTTCTCACAGGAGAATGGGAATTGTGAGGGCTGCTACTATGGAGGAAATTGAAGCTGAA AAGAAAGCTATTGAGAAAGATGTTAGGAACAGGATGGAAAAGACTATTGAAAATGTTCGTTCGAATTTCAATTCCATAAG GACTGGGAGATCAAACCCATCTATGCTTGACAAAATTGAGGTGGAATATTATGGTGCTCCAGCTAGCCTGAAGAGCATTG CTCAAATTAGCACTCCTGATGGCAGTTCTCTTTTAGTACAGCCGTACGACAAATCAAGCTTGAAGGCTATAGAGAAAGCC ATAGTTAGCTCTGATCTTGGTATGACTCCAAATAATGATGGAGAAGTGATACGGCTGAGTATCCCTCAATTGACATCTGA CAGAAGAAAGGAACTATCAAAGGTAGTGTCTAAACAAACTGAAGAAGGGAAGGTGGCTTTAAGGAATATAAGAAGAGATG CATTGAAAGCTTATGAAAAACTTGAAAAGGAAAAAAAGCTTTCAGAAGATAATGTGAAGGATTTATCAAGTGATTTGCAG AAGCTGACAGATGAGTACATAAAGAAGGTGGAAACCATCTACAAACAGAAAGAAAAGGAGTTGCTGACAGTTTGA
Protein sequence (LotjaGi5g1v0167500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATSFSPATPVRSIFQNPPKTTLFLPESFYGVKRSSISASASYVTLKLSRTLTLSAKPILSHRRMGIVRAATMEEIEAE KKAIEKDVRNRMEKTIENVRSNFNSIRTGRSNPSMLDKIEVEYYGAPASLKSIAQISTPDGSSLLVQPYDKSSLKAIEKA IVSSDLGMTPNNDGEVIRLSIPQLTSDRRKELSKVVSKQTEEGKVALRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ KLTDEYIKKVETIYKQKEKELLTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 264 | 259 | 3.4E-127 | – | |
| PANTHER | 6 | 264 | 259 | 3.4E-127 | ||
| Coils | 74 | 94 | 21 | - | – | |
| Hamap | 82 | 264 | 183 | 26.022 | ||
| CDD | 84 | 262 | 179 | 3.11518E-76 | ||
| SUPERFAMILY | 84 | 263 | 180 | 1.01E-65 | ||
| TIGRFAM | 90 | 264 | 175 | 9.8E-67 | ||
| Gene3D | 91 | 261 | 171 | 6.0E-66 | – | |
| Pfam | 101 | 262 | 162 | 1.4E-60 | ||
| Gene3D | 110 | 184 | 75 | 6.0E-66 | – | |
| Coils | 204 | 245 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0167500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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