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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0169000 |
| Transcript ID | LotjaGi5g1v0169000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0S3RY04|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0169000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43187042..43189069) extracted from Lotus japonicus Gifu genome v1.2.
AAACTATTTAATGAATGCAAAACTTTGAAGTCTTATTATCGTTTGATTTTCATGTACACAACATCTCTTGCTTTTTCTTC CTTTGAAAGCCACATATTCAATCAGGTACACCTCTCTCCAGATTCCATGAAGCTTTTTCTTTTGCTCCCTATAAAGTTTC AGAATCAAAGCTAAAAAATAAACCTGAAAGAGAAGTTGAGGATTCTTTTTCCTTAGAGTCCTGAAAGGACCTTGAATTTG GAGTGTAAGATTCTTTTTTTTTCATTGGAAATTGTAGCCTGCATCATCAGATTTGTCCTCTTTCTAACATTACTCTAGCA ATTCTGGTAAGCAGATTTCTCACTTCAGCACATTGTTTTGTGTTTTTGCATCATTTTCAGCTTAGCAGTGGGGAGAGAAA GAGGTACTTATGATGCTCAGAAACAGATCAAGACCAGTCACAAAGCCAAGTTTGATGGGTGATCACACCTCTTCTCAACA ATCTCCAAACAAAAACTATGTTAGGACTACCCCATCTCTATTTGGATCACAAAAATTGAGAGATTTCACCATGAAGTGTC TCTCAGGAGGAGCTGAGGCTTTGAGAAGCCCCACATCAATTCTTGACACCAGAGCATTATTATCCCCACATGGGAGTCCC ATATCACCAGCTATTACCTCCCAAAGAGTGCACTCCAAAAACACATACTCATGGGACAAGGTTGATTCAAAAGGAATTGG CCTTGCTCTTGTGGGTGAACTCAAAGATGATGATGATGATTATGACGCTATTCATTCTGATCCTCATAAGCCAAACAAAG GGAAAGTCCTGTTTGGAACTAAGTTTAAGATCAAAATTCCTTCCCTGCTTCCAAATTCCCCTTTTGAGTCTAAAACATGT GCTAATGCTGATTTTGGGGCCAAAGCGAAGGATTCTGAGAATTTAGGAACTTATAGAAAGGATTCTGATTCTCTACAAGC TGTTCCTGCTGCTACTGGTGTTATGAGATTGAGCGAGATGGAGCTCTCTGAAGAGTACACATGTGTGATTTCACATGGAG TTAATCCAAGAACAACTCATATATTTGATAATTGTGTTGTGGAAAGCTACTTCTCTCTGCCCAATAACCAGCACTCTGCT GCTTCAGTGCATTTCCTTAACTTTTGTTATACTTGCAAGAAGCATCTTGAACAGACAAAAGACATCTTTATTTACAGGTA TTAGTTCATTTGACCTTTATGAAAAGTCCCACATTGATCATTGATATGGCTAAGAGAGTCATTATATAAGAGAATACACT TATTCAGATTTAAATAACTTCAATTTTAAAGATTTAACTGTGAACTCAGTTCTACATACATGAAATTCTTTAACATTCAA GCTGTTTTTTATTTAATGTGATTCTCTAATTTGTTTTTGGTTTTATTTAACTAGTTTTTAAGCCACTTAAGAAGCTTGAC CTGGGTTTTGTTTTGCAGGGGAGAAAAAGCCTTCTGCAGCCAAGAATGTCGCCACCAAGAGATGGTGTTAGATGGAGCAG AAAATTAAGAATCTGATAGATGCTAAATGACCATTTTTCACTCCAATCTCTTGCAAATTGATGAGGATAACCCAGCTTGT CACTATTTTCAATCTTGGTTAGGAATTCTAGATAATATAGTTCATTGTGACCAGCTTATTCTTTTTCAAATTTACAACTA TTTTTAGTTTTGTTTTTGTCCTTTTCCCCTTCTCCCCTGAAAATAGAGATAAGAGGGTGTAGAGTTATTTTCAAGAAATG AGAGTAATTCAGATTGCGTCTGGTTTTCACCCTTTGTTTTCGGCTGAAGTAGATAATGATGATATGACTGAAAAATAGTA CTCTTTTTAATCTTCTTATCTCAGTTGTTGATGATGATCGACTATGATGCGTACTATTGTAAATTATTGTGAATGGGGAC CAAATTTTTATTTTTTTTCTCTCAAGAAGATTCCCTCTTATATGTTTTCAATGATTAATATATTATGTACTGTTCACGCC CATGGATTGATAAAAAATCCAGCAAACC
CDS sequence (LotjaGi5g1v0169000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTCAGAAACAGATCAAGACCAGTCACAAAGCCAAGTTTGATGGGTGATCACACCTCTTCTCAACAATCTCCAAA CAAAAACTATGTTAGGACTACCCCATCTCTATTTGGATCACAAAAATTGAGAGATTTCACCATGAAGTGTCTCTCAGGAG GAGCTGAGGCTTTGAGAAGCCCCACATCAATTCTTGACACCAGAGCATTATTATCCCCACATGGGAGTCCCATATCACCA GCTATTACCTCCCAAAGAGTGCACTCCAAAAACACATACTCATGGGACAAGGTTGATTCAAAAGGAATTGGCCTTGCTCT TGTGGGTGAACTCAAAGATGATGATGATGATTATGACGCTATTCATTCTGATCCTCATAAGCCAAACAAAGGGAAAGTCC TGTTTGGAACTAAGTTTAAGATCAAAATTCCTTCCCTGCTTCCAAATTCCCCTTTTGAGTCTAAAACATGTGCTAATGCT GATTTTGGGGCCAAAGCGAAGGATTCTGAGAATTTAGGAACTTATAGAAAGGATTCTGATTCTCTACAAGCTGTTCCTGC TGCTACTGGTGTTATGAGATTGAGCGAGATGGAGCTCTCTGAAGAGTACACATGTGTGATTTCACATGGAGTTAATCCAA GAACAACTCATATATTTGATAATTGTGTTGTGGAAAGCTACTTCTCTCTGCCCAATAACCAGCACTCTGCTGCTTCAGTG CATTTCCTTAACTTTTGTTATACTTGCAAGAAGCATCTTGAACAGACAAAAGACATCTTTATTTACAGGGGAGAAAAAGC CTTCTGCAGCCAAGAATGTCGCCACCAAGAGATGGTGTTAGATGGAGCAGAAAATTAA
Protein sequence (LotjaGi5g1v0169000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLRNRSRPVTKPSLMGDHTSSQQSPNKNYVRTTPSLFGSQKLRDFTMKCLSGGAEALRSPTSILDTRALLSPHGSPISP AITSQRVHSKNTYSWDKVDSKGIGLALVGELKDDDDDYDAIHSDPHKPNKGKVLFGTKFKIKIPSLLPNSPFESKTCANA DFGAKAKDSENLGTYRKDSDSLQAVPAATGVMRLSEMELSEEYTCVISHGVNPRTTHIFDNCVVESYFSLPNNQHSAASV HFLNFCYTCKKHLEQTKDIFIYRGEKAFCSQECRHQEMVLDGAEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 2 | 285 | 284 | 4.3E-109 | – | |
| PANTHER | 2 | 285 | 284 | 4.3E-109 | – | |
| MobiDBLite | 14 | 35 | 22 | - | – | |
| Pfam | 234 | 282 | 49 | 1.9E-22 | ||
| ProSiteProfiles | 241 | 285 | 45 | 23.557 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0169000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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