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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0173100 |
| Transcript ID | LotjaGi5g1v0173100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT4G02670.1 indeterminate(ID)-domain 12; Swiss-Prot: sp|O22759|IDD12_ARATH Protein indeterminate-domain 12; TrEMBL-Plants: tr|V7BGM2|V7BGM2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0173100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44258195..44262413) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGATTTTATTTATTGCATGGGGATTCTCTTGATGAATTCCACACAGATAAACACACGCATACATATATACACAAATA GAGATTGGAAAGGGATGTGTTTGAAATAGTTGTGCAGAGTTTGCTCAGAGACATGCATTCCATGGCCTCTAGATAGCGAC TTCAAAAATAATCCACCACCACCATCATCATCCTCTCTTCACGAGATTAAATAATTTTTGTTCTTCTTAATTTCTTCTTA GCAGAAAGTGAATGATGCCTTTTTATGTCTCTGTGTCTCTGCCACCTGTTCCCTTGCAAGGTTCTTCATAATTATTAGTA GTAGGATTTTCCACTTCTTGGTTCACCCGAAGGTGCAAAAGTTGCTACCACGAACCAAAGTAGTGAATATATAGCTAGCA TTTGAAGCAAACAAACAAACAAAGAAACCAATGCATTAGAATATAGTATCTTTGCTTTTCCTTCTCTTTTTTCCTCCAAG TTGGAGTTTTTCTTCAAAGCCAAAAATGTTCCCTGCAGTTATGTCCAATTCTAATTCTTTGTCTGAAGAAGCCCCTGTCT CTTCTGCTGGTACAAGAACTCAGGACTTTAGTAGATTAAATCACCTAGTCTCAACCATTAATTCCCCACAGCAGCCTCAT AAGATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGGTAGTAACAACTTTTTGTTCATAATCTCCTTACATATCCCTTC AATTCAACGTTTGTTCAATTATGGTACTAGAAGCTACTCACAAAAGTTTCTTCTCATAACTAATTTTTGCTTTAGTATCA ATTGTGGAAAATTTTCTAAACATGTAGTAATAATTTTGTCATGTGTTTGATATGGTGTGTTCTCAAACTTCTTCCCATAA TTGATTTTGGCTTCAGAATCCATTGTACAAAAATTCGCAACCATGTGCTAATTTTGTCAAATGTTTGATATGGTGTGTTT TCAAGCGTCTTCCCAAAAAAGTTAATCTTAGAATTTTTTCCAAACATGTATTAATTTTGTCAAATGTTTGTTATGGTGTA TTTTCAGACCCAGATGCTGAAGTGATAGCTTTATCCCCCAAGACCCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTG CAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGGGGACATAACCTCCCATGGAAGTTGAAGCAAAGGA ACAGCAAAGATATCAAGAAGAAAGCCTATGTTTGTCCAGAGCCTTCATGTGTTCACCACAACCCAGCAAGGGCTCTTGGG GATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTA TGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTT CCAGGTATTAGATATAGCAGACTCATATCAGCTAACAATTTTGAAGTACCGAATTTTTAACTATATATGCTTTATTAAAT CCATTCATTTGTTGTTCGAGCATGTTCAGATCGGCTTCTCTTTCTTCATATAATTTTCATATCCAAAAGTTACTTACAGA AACTTCTTCCCAAAATTTATCTAGATTTTATATTCAATTCTAAAAGGATTTTCTAAGATACACTTCATTAGTTTTAATTT AGATGAGTTTAGCCATATACTTCTTTATTCATCAAAGTCATATCAATAATATGTTTCAGTTTCTCTTCTTTTAAGATTAA GAAGCTACTTAAATAAACCTTTTTTAAAAAATTGATTATGATTTTAAAATTAATTATAGAAGAATTTTCAAACATGCACT TAAACATGAGAAGAGTCTCATATTATGTCAAAAAGGTCTCTCAAGTTTTTTTGGGTGGATCTTTGTCCTTACATGAGAAT GGTTAAGCTCATCAGTCTCTCTTGGAATTTATCCCTGCTATAAATGCTTGAATGCTATGGCAGAAAGTGGACACAAGCTA ATACAAGTGTCTAATTGCAAGAGAGACTGAAACTTGACCTGATTGTGAATCCTAAAACTTCCAAATGAATGTGAGGCAGC AACAAAAAACACAATCCACACATTTTTTGTTTTTTTTCTACTGTGCTATATCTGTGACTCAATAGCAGTTTTGTTGTTTT TATTAGCCTCATGATGCATGCAATTGCATGTCTGCTCGGCATGAACAGCATGATGTGTGTACAAAATTAAATCTACATAA AAATTCCAAGTGTGTCAGAGAGTTCTCAATTGTGTTGTAGACTTCTACTCTCTCTCTCTCTCTCTCCTCACATATGTGTG TACATGGAGGGGCTGCAGTCTCTAAGAAAATGATGAACATCTATTTTCGTCTACTGAAAAGTAAAAAGAAGTATATATAA TTAATTAATGTAGTTGGAAAAATTGTGATGATTTCTTACTTTTTCTCAATTTCATTATTTTATTGAAAAAGCCATTTTCC TCTGGGCTCTCATCATTGTGAAGTCTGGTAAATCTGAAAAAAATCTGATATGCTAAGTTGCTTTCTACTAACTAGCTTCA TAATTAGTGGATACATGCATGAGATTCATCTTATTGCTTATCTTTAGTGTGGTGCATGAGCTAGTTTCCCAAGATTTATC ACACCAGTAATCTGTCCATAAATCATGAGGGCATATCCACCGGTTGCACCATTAATCATTTCTGGTCTCTATCTATCTCT CTCTCCTACTTTAAATTTGACCCAGCAATTCATGTCCCCTTTAAGTTGATCAATGTTTTTGGGACACTTGAATCCGTGTG GACTCTACTATACACCCTCTCCCATGCAGCATGATATCCCTCACCTTTTCGCCAAAGGGGCACATTCCACAAGGACGTAA TAAGTCTCTATTATGTAAACTTCACATTTACATGCTCAACCTCTTAATATTACTAATTTAAAGTTAAAATGACCACCGAT TCCCTTCATTCCCGGCCCGGGTAATTGAACTTACAAATATACGGTGTAGTGCAAACATCTAATAGATACTGTCTCATATC TTTTCTTCATTTCTCACTTTAAATGTTTGAATGTCTGTATTAAGCCGATATTTACAAATCATTTTCCATGTTCAAATTCA ATCTTCTACTTGTTATTGAATAAACCAATACTAAAACTTTTCTTTCATGTGTTAATTCATGTCTTTTTTTTTCAATCTTT TTGGTCAATTCCAAATATAAATGTGGGGTATGTAGTATTTTCTTCTACATTATTACTGATAATACAAACATGCATTTGTC CTTTTTTATGTTAAAAAATGCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGC AAGAATGTCAGCAAACCAATCAACCACCACCACAACCACCAACCCATTAGTCCAATCTCTCTTCCTTTTCCCAACCCAAC AACAACAAAATATCCAAAACCACATGAATCCCTGGTTCCCATCTCAACAAGAAAACCCTAACCCTAGCAACCTTGCTCCC CTTACAACCACCCTCCACCACAACATCAAGCCTGAAGCTCAAAACTTCCACCTCTCTTCTTCTTCTCCCACATTCCTTCA CCACCCCAAGACCATCATAGCCTCCCCCCCCTTCCGTGACCTCCACGTTCCAGCCACGTCGCCGTACCTCTCAGCCACCG CCCTGCTCCAGAAGGCTGCGACCTTTGGCGCTGCCGCCATCACAGGCCAACATGCTCCTCCTCATCAGCTCAGCATGAGT GAGTTCGGATCAGTGACGACTCAGCTCGACTCGGTGGTGCCTGACCACTTCATCAACGTGAGAGGGATCAAGAACGGCGA CGACCGCCACACCAGGGACTTTCTAGGCCTGACCGGGGATGGTAACGGAGGCGCGGTTGATGTTAGCGTTGGCGTGAAGG ATATGCTAACATTCACGGGGGTCGATTACCAACAGCCACATTATAACGAGCACAACCACAACTCGTTGTTCAAGTCGCAA CAAGGTTTTGGATTAATTAGGACAACTACTGCCCCTGAGTCTTGGGGGAATTGTTAGAAACAAACAAGAGAGTGATGCCA AAAATTCAGGGGTATAATGGGCAACCCAATTTTCACCTTATTAATGAGCTTGTATTTTCACCTTTGAACCACATTTGATG CATGTTTGGAAATGGTTTTATGATTAATTTTAAATCTAAAGTTACTTTCAATAAGAAGC
CDS sequence (LotjaGi5g1v0173100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCTGCAGTTATGTCCAATTCTAATTCTTTGTCTGAAGAAGCCCCTGTCTCTTCTGCTGGTACAAGAACTCAGGA CTTTAGTAGATTAAATCACCTAGTCTCAACCATTAATTCCCCACAGCAGCCTCATAAGATCAAGAAAAAGAGAAGCCTCC CTGGAAACCCAGACCCAGATGCTGAAGTGATAGCTTTATCCCCCAAGACCCTTCTAGCTACCAATAGATTTGTGTGTGAG ATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGGGGACATAACCTCCCATGGAAGTTGAAGCA AAGGAACAGCAAAGATATCAAGAAGAAAGCCTATGTTTGTCCAGAGCCTTCATGTGTTCACCACAACCCAGCAAGGGCTC TTGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAG ATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCT TTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAA ACCAATCAACCACCACCACAACCACCAACCCATTAGTCCAATCTCTCTTCCTTTTCCCAACCCAACAACAACAAAATATC CAAAACCACATGAATCCCTGGTTCCCATCTCAACAAGAAAACCCTAACCCTAGCAACCTTGCTCCCCTTACAACCACCCT CCACCACAACATCAAGCCTGAAGCTCAAAACTTCCACCTCTCTTCTTCTTCTCCCACATTCCTTCACCACCCCAAGACCA TCATAGCCTCCCCCCCCTTCCGTGACCTCCACGTTCCAGCCACGTCGCCGTACCTCTCAGCCACCGCCCTGCTCCAGAAG GCTGCGACCTTTGGCGCTGCCGCCATCACAGGCCAACATGCTCCTCCTCATCAGCTCAGCATGAGTGAGTTCGGATCAGT GACGACTCAGCTCGACTCGGTGGTGCCTGACCACTTCATCAACGTGAGAGGGATCAAGAACGGCGACGACCGCCACACCA GGGACTTTCTAGGCCTGACCGGGGATGGTAACGGAGGCGCGGTTGATGTTAGCGTTGGCGTGAAGGATATGCTAACATTC ACGGGGGTCGATTACCAACAGCCACATTATAACGAGCACAACCACAACTCGTTGTTCAAGTCGCAACAAGGTTTTGGATT AATTAGGACAACTACTGCCCCTGAGTCTTGGGGGAATTGTTAG
Protein sequence (LotjaGi5g1v0173100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPAVMSNSNSLSEEAPVSSAGTRTQDFSRLNHLVSTINSPQQPHKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCE ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKDIKKKAYVCPEPSCVHHNPARALGDLTGIKKHYCRKHGEKKWKCDKCSK IYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQSTTTTTTNPLVQSLFLFPTQQQQNI QNHMNPWFPSQQENPNPSNLAPLTTTLHHNIKPEAQNFHLSSSSPTFLHHPKTIIASPPFRDLHVPATSPYLSATALLQK AATFGAAAITGQHAPPHQLSMSEFGSVTTQLDSVVPDHFINVRGIKNGDDRHTRDFLGLTGDGNGGAVDVSVGVKDMLTF TGVDYQQPHYNEHNHNSLFKSQQGFGLIRTTTAPESWGNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 6 | 334 | 329 | 1.1E-153 | – | |
| PANTHER | 6 | 334 | 329 | 1.1E-153 | – | |
| MobiDBLite | 36 | 57 | 22 | - | – | |
| Gene3D | 73 | 100 | 28 | 1.1E-5 | – | |
| SUPERFAMILY | 76 | 173 | 98 | 5.38E-7 | ||
| SMART | 77 | 99 | 23 | 0.017 | ||
| ProSiteProfiles | 77 | 99 | 23 | 10.949 | ||
| ProSitePatterns | 79 | 99 | 21 | - | ||
| Gene3D | 110 | 201 | 92 | 3.9E-6 | – | |
| SMART | 118 | 148 | 31 | 170.0 | ||
| SMART | 153 | 173 | 21 | 180.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0173100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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