Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0175700 |
| Transcript ID | LotjaGi5g1v0175700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT3G13710.1 prenylated RAB acceptor 1.F4; Swiss-Prot: sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4; TrEMBL-Plants: tr|A0A151S356|A0A151S356_CAJCA PRA1 family protein; Found in the gene: LotjaGi5g1v0175700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44888187..44892286) extracted from Lotus japonicus Gifu genome v1.2.
TCAAGTGCAATAGATTATGAAAGAATTGGATCCTTTCAAGTTATTTCTTCCAAAAAATAGTTCCAACTTATAACTCTTTT AGTATGTTGTTATCTTTAAATTTTACAATTAGTATCAAATAATCTTAAACTTATTGTCCCTCGGGCCAACCCGGTCCCGT CCTACATAGATCCGTCCTAAATTGGACCCGCATAATGTCGGGTTGCTTCAGGTCTAGAGACGGATTAGGGTCTATGAATT GAGCCGATCAATATTTAGAGCCGAATTAGGGTTAACCAAAATCCGTCCCAACCCGTCCCTCTTACACCCTCCAAAATTAG CAAAAAGAAAAGAACAAATCCAACGTCGTTTGCTTACTCAATAGTCAAACCTTAGTCAAACACGCTTTTTACACCTAAAA AAAACCAATGCAAGAAAACTAGAAAAGTATGAACTCATCGCCAGCGCGACACGGAACAAGTTCCCTTCAAACATGTCCTT CTCTCTCTCACACACAACACACACCAACTTCACCTTCAATTTCTGAAGAATCTCTATTCTCTCTGGAAATACAATTAGGG TTTCGAATTTCGAACTCGTTTCTACCATGTCTTCACCCCGTTACAGTTCCCTCCCTTCAACTTCAACCTCACCTTCCCAC TACCCCTTCTCACGCGCCACCAACGCCTCCAATTTCCCCACGCGCCGCCCCTGGGAAGAATTCTTCACCCTCCACTCCCT CACCCGCCCTTACTCCCTCGGCGAAGCCTCCCTCCGCGTGAAGCACAACCTCCGCCACTTCCTCGGCAACTACACCATGG TCCTCCTCTTCATCCTCTTCGTCTCCCTCATCTGGCACCCCGTCTCCATCATCGTCTTCCTCGCCGTCTTCCTCGCCTGG TTCTTCCTCTTCTTCTTCCGCGACCGCCCTGTCGTTGTCCTCTCCCGCACCGTCGATTACCGTTTCATCCTCGCCGCGCT CTGGGTTGTTACCGTTGTTGCGCTCGTTCTCACCAGAGTTTGGCTCAATGTCCTCGTGTCGCTTCTCGTCGGTGCCGCGG TGGTTGGGTTGCACGCGGTTTTCCGGAGTACTGAGGATTTGTATGTTGATGAGTTGGATGTTTCTGATGGAGGTTTGCTC TCGGTTGTTGGTGGTAGTCCCACCAAGAGAACAGGGTACAATAGAAATTTAGTTTAGATAGAACTGTATAGATACTGATT ATGTTTTGCTCTTACTTGAATTCCATAGATTTAAAGCATTTTGGTTACACGAAAATGTGAAATGCCCCTTGCATTGTTCA TGAGCTGCATTTTGCATATGATATATAGTTTTGAGGTGTTGTTAGCTGGAATGGATTTCTTTTGTTGGTTGTCTTTATGA TGCTTTTACGGCCTCGGGTAAATTCTTGGATAGATTGAATTGAAGCATTCAATTTGTGTGTTTTGAGTTCCAATTCAATG CATTACTTGTTTTGGATGTGATTTCGCAATGCACTAGGTTAGGTTATATCTTGGGTAAGCGGTCGTTTGATTTTTGATTC GCTTTGAGAAATGAACCATTTTAGTTAGTCATTTATTGTGTATTGGTTAGTTTGTTCTTAATTTCTTATTGTGTTGGCCA TATTTTCCATGTTGTTAGTTGGAATGGATTTCTATCTTGGTTTTCTTTATGATTTGTAAATTCTTGGATAGATTGAATTA AAGCATTCAATTTGTGTGTTTTGAGTTTCAACTCAATGCATTATTTGTTTTGGATGTGATTTTGCAATGCACTAGGTTAG GTTATATCTTGGGTAAGGCTCGTTTGGTTTTTGATTTGGTGTGAATGTAGATAGGTTTTGGTGGCTTTGAGGAATGAACC ATTTTAGTTAGTCATTTATTGTGTATTGGTTAGTTAGTTCTTATTATGTTTGCCATAATATGACCATGTTCTTAGCTGAA ATGGATTCCTTTCTTGGTTTTACTTTATGATTTGTAAGTTCTTGGATAGATTGAATTAAAGCATTCAATTTGTGTGCTTT GAGTTCCAATTCAATGCATTACCTGTTTTAATGTGATTTTGCAATGCACTAGGTTCAGTAATCTCTTGGGTAAGACTGTG AATGTAGATAGATTTTGCTAGCTTTGAGGAATGAACCATTTTGGATAGTCATTTATTGTGTATTGGTTAGTTAGTTCTCA TTGTGTTGGCCATATGAACTTCAGATTGCAATCCAATGGCCTCATTCATTGTTTTTGTTTCTATGTAAAACATGATCAGA AGTTTAAGAACATATGCTCTGTGATGGCATGCCCCATAATGTTTGTCAGGAGTTTGCACCGTAGGCCTGGCCGGAATTAG TATTGTTTTGGCATTTGATTTTGTTGAATTAGATTTAGATTGGCATGTGTTATGGTTTGAAAGAACTAAAAAGTGAACCA CTGAAGGCCAATTCTCTATTCTCCGGTGAGGCGTTTGGACCCTCACAATCTTAACTGCCCAAACACATCCGGGATATCTA GATAAAAATAACTAGTATCTTCATGTTTAATATAAAACCTTATGATATATCTTCTCAAGTTTGTTCCACATTGATCTCTA CTTTAGACTGTAGTTTTGTTTGTTAAACTTGATTGTTTCACCTGAACCCTTTGCCTTAACGGGTTTCTGAAAATGGAATA TATAACTATCATATGCATTCACCTATTAGCTTAGCTCCATTCTTCTCACAAATAGTTAAAAAAATCTCATAAGGAGTTAA AAACAATCACAAGATAAACTGAGCTTGTGTTTTGTGTTATGTGTACACTTTAAACTTGAAGAACTCTTGGATAGTATTAA AATGTGGCCATGTCCACCAGGAACTAGGAAGTTGGGGAAATGACAGACATCATATCATGGCAGAAAAAAGGTATCTGCAA TCTGGCTGAAAAGCATTGGAGGGCATTTTAGTGCTCGGTCACTTATCCGTTACGCAGACGGGAAACAAGCAACATATAAC TTGAGAAGTAAGATTTTGTGTGAAACCTCATTGAGTTCATATGACATTCAAACATACACTTTAGTATATTTCTAAGTTTG AATCACATTCACACACACATTTCAATGCTATACGTATATTACCAAGCTGTAAACATGAAGAAGGTTTAGGCTTGGGTTGA GTGAACTAACGCTCACGTTCTGAATGCAAACAGAGCCTTAGTTCTTTCACGATAAAGGTGTATGATTTTTGTGGGAGTCA GGTCACTCAACAACCCAACCAAATTAAAAATGTCCCCTTGCAGCACCATATCTTTTGGTAACCAGTCTCTTTCGTCAGTT GGAGATAAAACCACCTCAATAAGCGTGAGTGAACGAATGCACACAAATCATCTTTTGATTGTGGAAGGGAAGAATGAAAA AAAGATTTCAGAAGGCAAAAGGATAAAGTTCAAACAAAATCCATAACAATAATAAATAAAAGGGTTTTGACAAAGTTCCC CGAATTGAAAATCCATGAAAGTACAAAATCTGAATCAAATATCAACTAACTTAAATACCAAATCCAACATAAAATTTAAA TGTAGGTTGTTGAGAATTAAATTGTTTTACTTTCATAAGTTTTCATGAGACTTGAAAGATTTACTCATCCTCACAACCTC ACTATGCAATTCAAAGGTTTTTAGAGATCAAGTTTTGCTTCCTGCACTTCTGTACCGCTACTTACTCCTTCAATATCCAT GGGTGGCTAAGATTCACAAGGAGGCAACCCCTGCACCAATAAAAAAATATAAGCATAACATAAATAAATACTAAGTTTAA TGAAGAAAAAAAAGAGTCTAATTGTCTTTTCTACCTGTCCAGCATTCTCAGTAAACTCATTTGGTGACTCTACTTTTTCT TTAGTTGGCTCTTCAATTGAGACATTAGGAACTCTTTGACTGCTAGACCCTCTTGTAGTTCTTGGTTTCTTTTTCTTTCT AGTTGCAGGTGCCTCCTTCTTTTTTTCCTCCAAAGGGAAAATTTTGTTCCTTAATGCTTGCAATTGGACATCTGATCTGG TGATTAATTTTTTTTTGAAATAAAAAATATTATAAAAAAATGTTGTGTGCTCAAATATCAAAATCATACATATGAGATGA AATCAATTCTTTTAAACAAA
CDS sequence (LotjaGi5g1v0175700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCACCCCGTTACAGTTCCCTCCCTTCAACTTCAACCTCACCTTCCCACTACCCCTTCTCACGCGCCACCAACGC CTCCAATTTCCCCACGCGCCGCCCCTGGGAAGAATTCTTCACCCTCCACTCCCTCACCCGCCCTTACTCCCTCGGCGAAG CCTCCCTCCGCGTGAAGCACAACCTCCGCCACTTCCTCGGCAACTACACCATGGTCCTCCTCTTCATCCTCTTCGTCTCC CTCATCTGGCACCCCGTCTCCATCATCGTCTTCCTCGCCGTCTTCCTCGCCTGGTTCTTCCTCTTCTTCTTCCGCGACCG CCCTGTCGTTGTCCTCTCCCGCACCGTCGATTACCGTTTCATCCTCGCCGCGCTCTGGGTTGTTACCGTTGTTGCGCTCG TTCTCACCAGAGTTTGGCTCAATGTCCTCGTGTCGCTTCTCGTCGGTGCCGCGGTGGTTGGGTTGCACGCGGTTTTCCGG AGTACTGAGGATTTGTATGTTGATGAGTTGGATGTTTCTGATGGAGGTTTGCTCTCGGTTGTTGGTGGTAGTCCCACCAA GAGAACAGGGTACAATAGAAATTTAGTTTAG
Protein sequence (LotjaGi5g1v0175700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPRYSSLPSTSTSPSHYPFSRATNASNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVS LIWHPVSIIVFLAVFLAWFFLFFFRDRPVVVLSRTVDYRFILAALWVVTVVALVLTRVWLNVLVSLLVGAAVVGLHAVFR STEDLYVDELDVSDGGLLSVVGGSPTKRTGYNRNLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 64 | 64 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 8 | 188 | 181 | 2.8E-80 | – | |
| PANTHER | 8 | 188 | 181 | 2.8E-80 | ||
| Pfam | 29 | 169 | 141 | 1.7E-43 | ||
| Phobius | 65 | 82 | 18 | - | – | |
| TMHMM | 65 | 84 | 20 | - | – | |
| Phobius | 83 | 87 | 5 | - | – | |
| Phobius | 88 | 104 | 17 | - | – | |
| TMHMM | 88 | 105 | 18 | - | – | |
| Phobius | 105 | 115 | 11 | - | – | |
| Phobius | 116 | 136 | 21 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 137 | 141 | 5 | - | – | |
| Phobius | 142 | 159 | 18 | - | – | |
| Phobius | 160 | 196 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0175700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…