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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0183300 |
| Transcript ID | LotjaGi5g1v0183300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151QYZ6|A0A151QYZ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0183300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46658989..46661978) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATCAAAGCTTTCTGGGAGATATTGAAGGATGATTTTCAGAGGATGGCGGATGAGTTTCACAAGAATGGTATGTGG CCGCGGGGTACGAATGCCTCTTTCATTGCCCTGATACCAAAGGTTGATAACCCACAAGGTTTGAATGATTTCAGACCAAT TTCTTTAGTGAGTTGTCTATATAAGGTAATTTCAAAATTACTTGCAAATCGGCTGAAAGAGGTTATGTCTTCCATTATTG ATGAATGCCAATTTGCCTTTGTTGGAGGGAAAAATATGCTGGATAGCGTTCTTATTGCGAATGGGGCTGTTCATGAAGCG AAAAGGTGTAAGAGGCCCACTTTCTTGCTGAAAATTGATTACGAAAAAGCTTATGATTCCGTTAATTGGGAATTTTTGCT CTATATGCTTCGAAGGATGAAGTTTGGTGAGAGGTGGATAAGGTGGATTAAGGGATGTTTGGCTTCTTCGTCTGTGTTTG TATTGGTAAATGGCAGCCCAACGGAGGAGTTTTTCATGGAAAAGGGTTTGAGGCAAGGTGATTCCTTGGCCCCCTTTTTG TTTATAATTGTAGCTGAGGGGTTAAGTGGTTTAATGAAGCAAGCTGTAGAGAAAGGGAAATTTTCCTCATTCAGGTTTGG AGGGGATAGTGGACCTGAAGTGTCTTTGTTACAGTTCGCTGACGACACAATTTTCATGGGTGAGGCCAGTATTCATAATG TGTTTACTGTGAAAACTATACTGCGTTGTTTTGAGCTATGTGCCGGGCTGAAGGTTAACTTCTTTAAGAGCAAAATTTCA GGCGTGGGTGTTGATTTGAGCTTTTTGAATAGTGCCTCCTCTTTGCTGCATTGTCAGCAAATGACTCTCCCATTTGTTTA CTTGGGACTGCCGGTGGGAGGTAATCCTCGGAGGCTCGCATTTTGGGAACCAGTTTTACTTAAACTAAGGAAGAGACTTT CAAGCTGGAAGCAGAGGCTGTCGTTTGGGGCCAGGTTGTGTCTTATAAAAGCTGTCCTCTCATCTATTCCTCTATATTAT CTGTCATTCTTTAAGATGCCTGCAGGTATTGTTCATGAATGCAATAAAATTATGAGAAGGTTCTTATGGGGGGAGCAGAT GGTGGTGGGAAGATTGCTTGGGTGGAATGGTCTAAGATTTGTAGACCTAAAGAGGATGGGGGATTGGGGGTAAAGGACCT ACGCTTGTTTAATCGTGCACTGTTAGGAAAATGGCGTTGGCGCTTGTTAAGAGAAAAAAGTAGTCTTTGGTGCAAAATTC TGATGTCAAAATACAATGGTTCCGTGCATTCAAAAGACTCTTTTTGGTGGAGAGATTTGCATTCGGTGTGTTATGGTGAT GAAGAAGGGAAATGGTTTAATGAGGCAGTGAGTAGAAGGCTGGGGGATGGCAGAGATGTTGCGTTTTGGAAGGAAAACTA GACTGGCGGTGGTGCTTTCTGCAGTTTATTTCCAAGGCTTTTTTTGTTGTCTGTTCAGCAGGATGCTTCAATCTTTGATA TGGGCCTATGGGTAAATGGAAGCTGGGGCTGGAGATTTAATTGGAATTGATCTCTTTTGGAAAGAGAGGTGGAAAAAGTT GAGGAGATGCTGCAAAAAATTGGCAGTTTCTCTCCAAAGATGGGGACTAGTGATTCTTGGTGTTGGATTAAGGAGGGTTC AGGGATTTACAGCGTTAAGTCTGCATATGTGGAGTTGATTGGTGTTATTGGCTTGGACTCGGAGGAAAGTCGAGTATTTA GGAGATTATGGCAAACAAGGTCCCCCTCAAATCAGATTGCATTTGCTTGGAAGGTGATAATTAATAGAGTCCAAACAAGA ACTGATTTGGCAAGAAGGCATGCTCTGCCAATAAACTTTTCTCTTGTGTGTGGCTTGTGTGCCACTGAAGATGAAAATTG CCAACATCTGTTCTTCAGTTGTCAAGTATCTTGGACGGTATGGATGAAACTCTACGATTGGTTGGGGATCAAGACGGTTC TGTTAATAGATGTTGAGTCTCACTTTAGACAACATGAAAATCTTCTACTGGTTAGTAAGAAAGCTTGGTCCAGCTTGCTC CTAATTTGGATCGCTGCAGTGAATGCTATCTGGCAATGTAGAAATGGTTCTGTTTTTAGGGGAGAGAGGGTGGAGGTGGA TCGAATTGTGGAATTGGTGCAGTACAAGGTGTGGAAGTGGTTAAGAACTAAAGAGAATAATTTTCTCTCTTCATTCTATG AATGGGTTTCCAACCCAGTGGAGTGCCTCAAGTCTCTGCACTAATTATGCTTATACTTTTGCTGATGAATTGTTTGGTGG ATATTGGCACTTGTTATTGTATATTTTTCAGGTCCTGATACAAGCAATTTGTGGAGGTCTAGACGCAGGAGAGCTTTGTT GCATTGCGCACTGTGCTGATTTTTTTGTTGGAGCACTTCATCTTGCTTTGGCTTTCTAGTTTGAAGAGTATTGGTTATGG TACCTAAAGACTTTGTCGTGGAGCTTGGCCAGGATCTGATTGCACTTTATGAATTGGAGTTTGGCAAAATTATTCTGTTG AGGTTCCCCTATTCTTCTGGCAGAACCTTTCAGTGGAAGAACTCTTAGTTGAAAAATTGTTTTACTGCTTTGGATGGGTT GTTGTGGGTTGGGTCGAGGAGCACTTTGTCTTGCTGTAATTCTTGCTCTGATTTTTAGTTCTCCTTGGAGGGTCACTTTT GATTTTGGTGATTAGGTATTCTTTTTCCTTGTCCAGGTTTTCCCAAGGGGGTTTTATCCTAGTAAGGTTTTAATGAGGCA TTTTCTCTGAAATCTCCCTTCAAGGTGGGGGGGGGTCGGGTAGTATTAGCTTTAGTGGGTTTTCTTCGGTTGTATATTTC GTTGCTTGTTACTTTTCTTTCATCACCTTCCTCTTTGTATTGGGTTGAAGTACCCCTTGTACTTCTCTTCAATATATTCT TTGGCTTATAAAAAAAAAAAAAAACTTTCA
CDS sequence (LotjaGi5g1v0183300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCAAAAAATTGGCAGTTTCTCTCCAAAGATGGGGACTAGTGATTCTTGGTGTTGGATTAAGGAGGGTTCAGGGAT TTACAGCGTTAAGTCTGCATATGTGGAGTTGATTGGTGTTATTGGCTTGGACTCGGAGGAAAGTCGAGTATTTAGGAGAT TATGGCAAACAAGGTCCCCCTCAAATCAGATTGCATTTGCTTGGAAGGTGATAATTAATAGAGTCCAAACAAGAACTGAT TTGGCAAGAAGGCATGCTCTGCCAATAAACTTTTCTCTTGTGTGTGGCTTGTGTGCCACTGAAGATGAAAATTGCCAACA TCTGTTCTTCAGTTGTCAAGTATCTTGGACGGTATGGATGAAACTCTACGATTGGTTGGGGATCAAGACGGTTCTGTTAA TAGATGTTGAGTCTCACTTTAGACAACATGAAAATCTTCTACTGGTTAGTAAGAAAGCTTGGTCCAGCTTGCTCCTAATT TGGATCGCTGCAGTGAATGCTATCTGGCAATGTAGAAATGGTTCTGTTTTTAGGGGAGAGAGGGTGGAGGTGGATCGAAT TGTGGAATTGGTGCAGTACAAGGTGTGGAAGTGGTTAAGAACTAAAGAGAATAATTTTCTCTCTTCATTCTATGAATGGG TTTCCAACCCAGTGGAGTGCCTCAAGTCTCTGCACTAA
Protein sequence (LotjaGi5g1v0183300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQKIGSFSPKMGTSDSWCWIKEGSGIYSVKSAYVELIGVIGLDSEESRVFRRLWQTRSPSNQIAFAWKVIINRVQTRTD LARRHALPINFSLVCGLCATEDENCQHLFFSCQVSWTVWMKLYDWLGIKTVLLIDVESHFRQHENLLLVSKKAWSSLLLI WIAAVNAIWQCRNGSVFRGERVEVDRIVELVQYKVWKWLRTKENNFLSSFYEWVSNPVECLKSLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 196 | 182 | 1.1E-24 | – | |
| Pfam | 28 | 119 | 92 | 2.5E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0183300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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