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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0186100 |
| Transcript ID | LotjaGi5g1v0186100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKJ1|E2FKJ1_MEDTR Sieve element occlusion by forisomes 2; Found in the gene: LotjaGi5g1v0186100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47288717..47294108) extracted from Lotus japonicus Gifu genome v1.2.
AGGAGTTTCTCTGTATAGTCTGTGCTATACTGCTATATAGTACTGATGAAGCCAAGTTAAAACTAGTGTAGTCTAGCTAG TAGAGCTTATAAATAGAGGGAGTATATATGGAATGGCACAAAGCAAGTAGCTCATTAATTAATTTGCCTTCAAATACAAA CTTAGAATATACACAAACACATATTGAATCACCATGTCATCGCCCATTGCAGCTTCAACTCATGCCTCTATGATCCAACA GATTCCCACATCGCCAGAGCAGAAACCTGAGCTCCCAGACCCCTTTAAGCTTGATGACTATCAGATCCTCCACAAAGTTT ATCTGACTCATGTCAATGATGATGAGAAGTGTGATAAGGACACCCTTTCAACTCTTGTGTCCAACATTATCTTGGGCTCA ACTCAAATTTCTGGAACTTCTCTGCTTCATGTAATTCACCCTTTCTTCTTTCACTTTGACAATTAGTATTTATACTTTAT TTAATATAGGCTTAAATACTCTGTAGGTCCCTAAAATTGTCTGCCGTATGAAAATAAGTCCCTGAAATTTTTTTTCCCGA TTCCGAATCCCTGGAAAATGTTTTTTTAATCAAAATAAGTCCCTACTCGTGTTTCCCGCCTATGTGGCACAATTTTTGCT GAGTCATTTATTCCACGTGGCTATTATATTTTTTTTTTAAATACACATGGATTAAAAAAAATTAAACATTTAAATTTAAA ATTAAAATCTTTTTAGGGATTTAGGTTAATTAGATTTAGGGTAATTAGCTTAATAAGATTTTAATTTTAAATTTATACAT TTAAATTTAAAATTTAAATCTTTTTAGGGATTTAGGGTTAATTAGGTTAATAAGATTTTAGTTTTAAATTTAAAAATAAA AAATTAAAAATTAAAATTAAAATCTTCTTAGGGATTTAGCGTTAATTAGATTTATGGTTAATTAGGTTAATAAGATTTTA ATTTTAAATTTAAATGTTTAATTTTATTTTTTTAATCCATGTGTATTTAAAAAAATAGAAAAGCCATGTGGAATAAATGA CTCAGCAAAAATTTAGCCACATAGACTGGAAACATGAGTAGGGACTTATTCTGATTAAAAAAAATTTCAGGGATTCAGAA TCGGAAAAAAAAATTTCAGGGACTTATTTTCGTACGGCAGACAATTTCAGGGATCTCTAGAGTATTTTAACCTTTAATAT ATGTAGGGAAGGAAATCTTATATATAAAAATATTTTTTACAAATTAAATTGAAAGGGTTGTCTGCCAACAAACAACTAAA TCAATTGACGTGAGGTTGTTCTAGCTTAAACATCTATGTCTTGGAATTGAATATAATTGTCACTGATGGAAGATGTAGTT TAAACCAAAAATATAAAAGGGTTTGCTTGCAAATATATTTTACTGTAAGAGCAAGAGCAATAGCATATTGTAAATAACTT ATACTAGTCATTAACTTGCATAACAAGTATATAACATGTACTAAACATTTAGGACATGTTAGTACATGATATTTACAACA AAGTTCTTATTAGATAAAGTTAATTTGTAGAGAAGTTCGTATAACTTCTGAAAAAGATTATAGTAGTTAGAGCTAAGTGC TAACCTTTTTATTGTTTCATGGCGTCAGTCACAGATTGCTCTCAAACCAGATTTCCCAGCACTGAAGCGGATCTCTTGTC AGGTTAATTATCTCTTATGTTATGTAATTTAGAGGATTTTTTTGTGAAGTTCCAACTCAAACACCAAATAACTAACACAT AAGCAATAAAATAATGTCTTGCTAATTATGATTGATGTTGGTAATTAACAGATGATAACAACACGAGGCACTGCACAATG TGCACACCAGAAAACAATATGGATTCTCCAGCAGCTGAGAAGCTTCTCCTGGGATGCAAAAGCACTGATAGCTCTAGCTG CTTTCACTTTGGAATATGGTGAATTTTGGCTCCTTTATAGGATTCCAACATCAGATCCACTTGGAAACTCACTGAAGCTA CTGAACCAAGTGCAAATCAGGAAAGTCCCTACTGATCTTACAGATCTGGTCAGTTTCTTGGTGCAAGTGTTTCAGGAGAT CAAAAAGTGGGCATCATGGTCTGCTTTTGGTTATGATTTAGAGGAAGTGCATTCCTTGTCAGATGCTATACAAGAGATCC CTCTTGTTGTGTATTGGACAGTTGCTTCTATTGTTGCATGCTCTGGCAACCTTGTGGGTGTATCGTAAGTTCTACTCAAT TCAACTTAGTTTCATCCTCAGAATCAATTCTCATGAACCCGAATCACTTTTAGGTGGTTGTATGCTGTGTGGCAGTTGAC TTAATGAATGTTTGAATAGATGGTAGAAAACTACAAAAGCATGGTTGACAGAAGTGGTTTTGACAAGCATGATTTTGTCT AACCATGATTGTCTGCAAATTTATGCATACATGAACTTAGAGAATTAGTTTTAGTTATAAAATCAATTATTTGAATAAGC TAGAGAGAGTATAAGCTTTTGCGGTTGCCATAATCAATTATAAAGAAATTTCATATTTGGATTTCCCAACATTATCTTAT AGAAACCAGAAATTACTTTTCTCGTAAATGTATCTAAAGATGAATCATTTCACTTTCAATTTACTTCAACTCACTTTTCC CATAATAATTTTACCAAATTTAATTGTGTTCATAATCAATTCTTAAAATGTTGATCCAAACACCCACTAAGATATCATGT TTAATTGAAAACATCTAAAATAAAAGAAACTTCTCATGTTGATCCCAAGAACAGAGAATACAGAATGATACAAGAATATA CTATAAGCATACTGTATTACTATTTACTATAGCTTTTGTTCCCTAAATCTGCTACTAATAATTAACTTCCAATTTGTTAT TAAAAATGTAACTGTGACACTATATATATGTGTGAGTAACAGATTTATTTTATTGTTTTGGTTCAGGAAGTACAATTTAT CAGAGTTTAAAACCAGGCTTTCAATTATGGTTGACAAGTTGAAGGAGCATTTGCAGAAATGCCAAGTGCAAATAGGTACA TATAAGATTGGTGCTTCTTTTTCCAATGCTTTGTGATTTATAAATGCTAATCAAGATATCATTGCAGATAGAATAGACCA TTACAGAAGCCGTATGAACGCATCAAAAAATATCAAAGATGTTGTAGATTTTTTGAAGCTTCTGATCCTTAACGATGATG GATCTCACATACCCCAATTATATGAAGACAACATCATAATTAAAAAGGTTAGTGCTCAAGCATTCTGGTTTCCTAGTTAA TTTAGTCTCATTTAAGGTAGCTTTTACTTAACTCACAAATGATTATGTCCTTTAGCTTTTCTTTTTAATTTTTTTTTACC ATTTTAGGGTCTTGAAGTCTTCAAGCAGAAGTATGTCTTGCTATTCATTTCGAGCCTCGACAGCATTGGAGATGAGATCA TGCTTTTGAACTCAGTCTACAACAGATTGCAGGAGAATCCAAAAGAAGCAAAAAAAGGTTTCAGGAAAGAGGACTTCAAG ATTTTGTGGATCCCCATTGTGGATATATGGGACGAGGTCCTCAAGACTCAATTCAAAACTTTGAAGGAAAGCATGAAATG GCACGTTTTGGAGTACTTCTTTGAGTTACCAGGCCTTCGGATAATAAGGGAGAAATTAAATTATTTTAATGGCAAGCCTA TTGTGGCGGTGATCAACCCTCAAGGTGTTATAATGAATGATAATGCATTGGACATTATTTTTCAATGGGGGTTCGATGCG TTTCCTTTCAGGAAAAGTGATGGCGATGATCTCATTAAAAAATGGAGCTGGTTCTGGAATTTGATGAAGAAAGCAGATCT TAATATAGAGGTAAGTGCAAGTATATACATATTTATGGATTCACTAATTGATGGACAGTCCGAACACCCATTTTGTGGTG GTTTAAAACTGCCACAAAGTGGAAACTTTATAACATGAGTTTTGTTTCGGTAACTTTATAAAAAACGTTTTGGTGCAGTG TAAGATGCCACAAATACGCAGCGTCTCATTCATGTAGCGTGGTTCACAAAAGTTTTTGTTATGGCTTTGAATTCACTACT GTTTACTACGCATGTTTTGTTATGGTCTAAAACTGTCATAAAGTGGAAACTTTATAAAAAGCGTTTTGTTGTGGTAACTT TAATTATAAAAAACGTTTTGGTGCGGTCTAAGAAGCCACAAGTATGCGGTGTCCCATTCCTGTAGCGTGGTTCACAATTT TTTTTTCTTATGGATTTAGATTTACTGTTGTTTACTAATTACTACACACCGTATTCACAAATGCTTGGCTATTTAATTAA GATTTGAAGATCATGTTTTTAGCATGTATTATGTCTTTTTCACCGAGATTAAATATGAATCATCCGATTTAGATATAATG ACTCATATTGACTGAACGTAGTGATTGCGTCAAAAAAATGACTGTGAAAGTTTTATAAAATTCATCTTTTGAATGTTTTT ATATTATATTTCTAATGTTTACCGCCGTGTAAACTAATCAGGACTTTGGAAGTGATAGTTACATCTTCATCTACGGAGGC AACGATCCCAAGTGGATCCGCGACTTCACAACCGCAATTGCGAAAATAAAAAAGCATGAGAAAATCAAGAACGTGGATGT GACCATAGAGCACTACCAGCTAGGGAAGAACAATCCAACAAAGGTTCCATATTTCTGGATGGGCGTGGACGGGAAGAAGG TTAGCCAGAAGTGTCAGGACCCGGTGGACTGTGAGATTCAAGAAGCTGTGAAGAGCTTGCTCTGCCTGAAGCAAGACCCA ACTGGATGGGTGCTTCTCAGCAAAGGGTATCACGTGATGCTTCTCGGTCACGGCGAGCCGGTGTATCAAACTGTTGCTGA TTTTGAGTTGTGGAAGCACAAGGTGCTTGAGAAAGAAGGGTTTGATGTTGCTTTTAAAGAATACTATAATGGTAAGGTTA AGGAGTTATATTCACGTAACCAATGCGCTGTTATCAATGTGGATAACCATGCTGCTTCAAATTTGCTAGCAACAATTACT TGCCCAAATCCACCTTGTGGCCGTGTGATGGAGGTTACCTCTGTCAATTACAGGTGCTGCCACCATGATGATCCAAACAG TTGCAGTATCTGATGATGTGTTTGGACTGAGAAGTACCTTCCATATTTTGTTGATCTGCTAGCTTAAGCATGAAGTTTCA ATTCTATTTTTGTTTGTTTTGTTTACTTTTATATGTATGTGTGATTGTGTGTCAAGATTCAGACATATACTTTGTGTCTT GTAGCCACTTTTGTTCAACTTGTATGGGTTGAAACTAAATAATGGCTTCAATTTGTCTGTATGATGTAGAATTTCTTTAT TGAATAAGATTAGTTATGCATATGCTATTAAT
CDS sequence (LotjaGi5g1v0186100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCGCCCATTGCAGCTTCAACTCATGCCTCTATGATCCAACAGATTCCCACATCGCCAGAGCAGAAACCTGAGCT CCCAGACCCCTTTAAGCTTGATGACTATCAGATCCTCCACAAAGTTTATCTGACTCATGTCAATGATGATGAGAAGTGTG ATAAGGACACCCTTTCAACTCTTGTGTCCAACATTATCTTGGGCTCAACTCAAATTTCTGGAACTTCTCTGCTTCATTCA CAGATTGCTCTCAAACCAGATTTCCCAGCACTGAAGCGGATCTCTTGTCAGATGATAACAACACGAGGCACTGCACAATG TGCACACCAGAAAACAATATGGATTCTCCAGCAGCTGAGAAGCTTCTCCTGGGATGCAAAAGCACTGATAGCTCTAGCTG CTTTCACTTTGGAATATGGTGAATTTTGGCTCCTTTATAGGATTCCAACATCAGATCCACTTGGAAACTCACTGAAGCTA CTGAACCAAGTGCAAATCAGGAAAGTCCCTACTGATCTTACAGATCTGGTCAGTTTCTTGGTGCAAGTGTTTCAGGAGAT CAAAAAGTGGGCATCATGGTCTGCTTTTGGTTATGATTTAGAGGAAGTGCATTCCTTGTCAGATGCTATACAAGAGATCC CTCTTGTTGTGTATTGGACAGTTGCTTCTATTGTTGCATGCTCTGGCAACCTTGTGGGTGTATCGAAGTACAATTTATCA GAGTTTAAAACCAGGCTTTCAATTATGGTTGACAAGTTGAAGGAGCATTTGCAGAAATGCCAAGTGCAAATAGATAGAAT AGACCATTACAGAAGCCGTATGAACGCATCAAAAAATATCAAAGATGTTGTAGATTTTTTGAAGCTTCTGATCCTTAACG ATGATGGATCTCACATACCCCAATTATATGAAGACAACATCATAATTAAAAAGGGTCTTGAAGTCTTCAAGCAGAAGTAT GTCTTGCTATTCATTTCGAGCCTCGACAGCATTGGAGATGAGATCATGCTTTTGAACTCAGTCTACAACAGATTGCAGGA GAATCCAAAAGAAGCAAAAAAAGGTTTCAGGAAAGAGGACTTCAAGATTTTGTGGATCCCCATTGTGGATATATGGGACG AGGTCCTCAAGACTCAATTCAAAACTTTGAAGGAAAGCATGAAATGGCACGTTTTGGAGTACTTCTTTGAGTTACCAGGC CTTCGGATAATAAGGGAGAAATTAAATTATTTTAATGGCAAGCCTATTGTGGCGGTGATCAACCCTCAAGGTGTTATAAT GAATGATAATGCATTGGACATTATTTTTCAATGGGGGTTCGATGCGTTTCCTTTCAGGAAAAGTGATGGCGATGATCTCA TTAAAAAATGGAGCTGGTTCTGGAATTTGATGAAGAAAGCAGATCTTAATATAGAGGACTTTGGAAGTGATAGTTACATC TTCATCTACGGAGGCAACGATCCCAAGTGGATCCGCGACTTCACAACCGCAATTGCGAAAATAAAAAAGCATGAGAAAAT CAAGAACGTGGATGTGACCATAGAGCACTACCAGCTAGGGAAGAACAATCCAACAAAGGTTCCATATTTCTGGATGGGCG TGGACGGGAAGAAGGTTAGCCAGAAGTGTCAGGACCCGGTGGACTGTGAGATTCAAGAAGCTGTGAAGAGCTTGCTCTGC CTGAAGCAAGACCCAACTGGATGGGTGCTTCTCAGCAAAGGGTATCACGTGATGCTTCTCGGTCACGGCGAGCCGGTGTA TCAAACTGTTGCTGATTTTGAGTTGTGGAAGCACAAGGTGCTTGAGAAAGAAGGGTTTGATGTTGCTTTTAAAGAATACT ATAATGGTAAGGTTAAGGAGTTATATTCACGTAACCAATGCGCTGTTATCAATGTGGATAACCATGCTGCTTCAAATTTG CTAGCAACAATTACTTGCCCAAATCCACCTTGTGGCCGTGTGATGGAGGTTACCTCTGTCAATTACAGGTGCTGCCACCA TGATGATCCAAACAGTTGCAGTATCTGA
Protein sequence (LotjaGi5g1v0186100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPIAASTHASMIQQIPTSPEQKPELPDPFKLDDYQILHKVYLTHVNDDEKCDKDTLSTLVSNIILGSTQISGTSLLHS QIALKPDFPALKRISCQMITTRGTAQCAHQKTIWILQQLRSFSWDAKALIALAAFTLEYGEFWLLYRIPTSDPLGNSLKL LNQVQIRKVPTDLTDLVSFLVQVFQEIKKWASWSAFGYDLEEVHSLSDAIQEIPLVVYWTVASIVACSGNLVGVSKYNLS EFKTRLSIMVDKLKEHLQKCQVQIDRIDHYRSRMNASKNIKDVVDFLKLLILNDDGSHIPQLYEDNIIIKKGLEVFKQKY VLLFISSLDSIGDEIMLLNSVYNRLQENPKEAKKGFRKEDFKILWIPIVDIWDEVLKTQFKTLKESMKWHVLEYFFELPG LRIIREKLNYFNGKPIVAVINPQGVIMNDNALDIIFQWGFDAFPFRKSDGDDLIKKWSWFWNLMKKADLNIEDFGSDSYI FIYGGNDPKWIRDFTTAIAKIKKHEKIKNVDVTIEHYQLGKNNPTKVPYFWMGVDGKKVSQKCQDPVDCEIQEAVKSLLC LKQDPTGWVLLSKGYHVMLLGHGEPVYQTVADFELWKHKVLEKEGFDVAFKEYYNGKVKELYSRNQCAVINVDNHAASNL LATITCPNPPCGRVMEVTSVNYRCCHHDDPNSCSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 11 | 671 | 661 | 0.0 | – | |
| PANTHER | 11 | 671 | 661 | 0.0 | ||
| Pfam | 34 | 278 | 245 | 1.2E-44 | ||
| Pfam | 475 | 666 | 192 | 2.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phloem development | The formation of the principal food-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi5g1v0186100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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