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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0187000 |
| Transcript ID | LotjaGi5g1v0187000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-repair protein XRCC4, putative; TAIR: AT3G23100.1 DNA ligase IV-binding protein; Swiss-Prot: sp|Q682V0|XRCC4_ARATH DNA repair protein XRCC4; TrEMBL-Plants: tr|A0A1J7GKQ6|A0A1J7GKQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0187000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47445418..47450020) extracted from Lotus japonicus Gifu genome v1.2.
CGATGAAACCATGTCAAAGTCACACAATCTTCCATTGCACACTTCTCATTCCCTCTGCAAAAGAAACAGATAGTGCCAAA TAACTGACATAGGTGTAGCCAAGTTGTTCCTTCTTCTCCAAATCCATGGAGGAGACAAAGAGGCACACATGCCTGAAGCT CCAGATTCCAAATGCCAACGAAACCATATTCGTGAAGGGCACTTGGTTTGACACCCACTTCGACCTCGCCATCACCGACG GCGTCGCCGCCTGGCACTGCCACGGTAATACTCTCTATCCCTGCCTACCCTTTTGACTCCTTTCTCGTTTTCCACTACCC TTTTCCGATTTCATGCCAAAACAATCATCAAGTTTTGATCTTTGTTTCTGTAAGCTTCGGAGGATGAAGTCAAGCAGCGT GCTGCTCAGTGGGACCAACCAGTTTCTGAGTACGTGGAAATGTCTGAACGCTACTTGGGGTTTCAGCAACCTGGTTCTGT GTATGCATTTGCTGATGCTGGTGATGGCCATAAGAGGGTAACTCTATAGCTAACTGTTGTTATTCATGGTTTTTTTTATG GTGTGAAGATATTTGGTTGACTATGGTACTTTTTTGTGTTAGAAGTCCCACATTGGTTAGAGATAGAGCATAGATAACAT TTATAAGGGTAGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGTAGTT TGTTTGATTGATAGTTGTCGTGGACCTTTGAGAAGGAAGGAATGACGCTGCAATGGAGATGGAAATGTTTGCAGTCTTCT GATTGTAAGAAAACTACTGCAGAAATATTGGACTTTCTAATGGATGCAAACATAACACTTAGTGTAAGATTACATTCTGC TTAACTTTTGAGACTCTCTTTGTATGCATTTTGAGTAAGCCTTCAATTTTCGTGCTTAATGCCAATTGATTTAGTTCTTA ACATAGAAAAGTATGTTTGGTTTCATGATTTGTGCAAAATACATTTACTCAGAACCGAACATGCTAATGTTTATACTTAA TGTGAGAAGTCGGGCACATTAGTATCTGATATGTGATTTTTTTATTCTTGGTAGATAACATACCCAACTTTGTCATACAT CAGGCCAAATGTGTGATTTCTTTATGTTAGGGACTAATTTGAGGGTGTGGTAAACACAAAGGATGAAAGTAAGGTTTACT CCTTGTGTTTTCTATACTAATATTTTCAAGCTTGATATTTGTCTGTTTTTCTCGTTCTTGGTTTGTTTATTATGGGCATT ATGATGGGGATGCCATGCTTGGGATGATGAAGGGTAACCACAAATAGGACTCATTTTTCCAATGGGGATGCCATGCTTGG GACGATGAATGGTAACAACAAATAGGACTCATTTTTCCAATGGGAAATGATAAAAGCCTGCATATAATGTTTTCACTCCA TTGCCATTGCCATTGCATTCATTCATTCATTAAATTATTAACCTCTATTCTGTGGAGAAGTCAATATTTAGAGAAAGACT GATAAGTGGTAAGCATGCTTGTTGCTCAGGTTTAAGAAATATTAATTCTTCTTGAATCTTATATTCATTATTTCTTTTGA GGGTCTTTATCTATGACAATCTTGACGAGCTTCTAGAAATGTTTGCACTAAGAGCAGTGTTGTTAATGTCGGAAAGCCAA AAACAGACCATATTTGATAAACACTGATGGCGGACTGTGAATTATGGCAGAATATTGGCCATCGCGGCTTGCTGGAACTC CTCCATGGCCGATACTTGACAACACTAACTAAGTGCAAGTTATTCATTACATTTTCTGCAAGTGTGTATAACTTTTGCTA GCTCTATGGAAAGTTTCAGTTACAAGTGGCCTAAACATAAGCTAATGCTAATTAAGCTTGTTAAAGGAATACTGTAGTGT TCGGCCTCTTACATTACATTGACTTTAAATTTGAAGTTAGTATCCCCCCTGAAAGTTGACATTTTCACTGATTTTTATAT ATAATCATGTGAGTAGCTCATGAGCAGCTGGGCCCATTTGTTCTCCATTTTGTATATCATGTGGCTTATCTCGTTATATC TTGGAAATGACACTCAAATAAGTTGGCTATGATGGGTTTATGTCAAAAGATAAAAGTAATTCTTATAACGCATCACCTTT TTCATGTTCAGCAAATTGCAAAATCTGAAAAATTCAAACTTCTTCCCTCACATTGAATGTATTTTTATGATAATAGAAAA CTTTTACCTGTTAAATTTTCATTTCACCACAAACTGAAGTTTTTAAACGTATGAGATTTAATTTATGCTTGAATCAATAT GTCAATTCTAATTGCACCTTCTTTTCTCATGTACGAGAGGGCAAGAATCTTTCTTAATTCTTACCATATTGAATCCTTGT CTTTTCTTTAGATCTGAACATCCTAACAGGCATGTTTGTTAATGTCCATGTACAGGAAGAAGTTGTCAGAAAAAATGAAT TGTTTGAGAAGATGAAAGAGGAATCTGAGAAGTGCTTAGCCCAAAGTGAGAAGATTGCCAAAGAGAAGGTCGAATTTGAA TCTGAAATCTATGTGAAGGTAACTTCTTAACTCTTGCTTTGCGATTGTTCTATTGTCATCCCGGTTGGTTCATTGGATGT CTTGGCCTTCATGGTTTCCTAACGTTCTTTGTCACTTAAGAAGACAGGTTGGTCTTGGAAAACTGCTGAACCAATTAAGG CCCCGTTTGGGAAAACAACTTAATTAAGCGCTTATGATTATAAGCAACCGTAAGCGCTTATGACATAAGTTCTTATTCAT AAGCTATTTTAAAATGTATTGAAATAAATTGAAAATAAGCTATATATAAGCCTAAGCTCTTTTTCATAAGCTATCCTGAG TAGCTTATGAAAATAAGCTCAAAACAGCTTATGGCCCATAACCTGTTTGCATAAGCTCTCCCAAACACTGACACAAACGC TTATGTTATCAGATAAGCTCAAATAAGCTCTCCCAAATGGGGCCTAATTCATTGAACTAATTCATAATTTCCCAATATTG GACCGATTCTTCACTGTACTTTGACTTCCTAATTCACAAGTTTATGGCAATACATGTTCTGTTTGACATGTTCAAGATTT TGATGATTTATGGTCAAGGGGAGACTGCAATGGGGCCAAAATCCGAGGCTTAAACACAGCTAACACAAAAGGCAGGGCCA AACTGCTTCTAGGATAGTTGGGGCTAGGATGCGTCTCCGGAATAGTTGGATCCAAAACACTTCTCTTTGATAGCCATGGC TGAATGACTTTTCTTGGATAGCTGGGGCTAGAATGCTTCATTAGGATAGTGGGGACCAGATTGCTCTTTTGGGATATTCG GGATGGGATCAAACTATTCTCTAGGATAGTTGGGGTCAGAATGCTTCTTGAATGAGACAAAAGCCGCCAAGGGTTATGAA GGCTTAGCAAAAGTTTAGAACTAGGACACAACAATGGGACAAATTGACATAAGGATTTGAGACAGGTTGTGAAAGTAGCA TGCAAGAAAACTATTGACGGCTTGGGCTTGGTCTTGAGCAAGAGAGGATATTCTCTTGTGTATTTTCTGTTTTCCCTTTC CTTTGTTTACTCTGTTGCCTCACTGTTATTCTGATTTCATAAAAGAAATATCGTAAAAATACCATTCAGTTCTTAATCTC TATCAATTGCAAACAAAAACTTGTAGCTTTCTTCTACTATGCTGCAGATTTTGAGCATAAGCTCAACCGAACACAAACTA CTACTGATGACTACTGCACTTTAGTGTGTTTGAAAAGTCATGAATGGGAACATACATGAATAATTGAAAGATTGAAAAAT GTAGGAGGACATTTCTTTCATTATTATCTGCTTATTGAGGCTAACTTTACTGGTAAGATTAGTATTTGTTATAGTTTTTC ATTATTCTTCCTTTACTACTATTACGAATCTTGCATATTTCTTTCTGCTTTGTTGTTTTGAAGTTCCAATCATCAAACTG ACCCTGAATTTGTTTTGTTTTAGTTTCTGGGGGTCTTAAATTCTAAGAAATCAAAACTAAGAGAGCTTCGAGATCAGCTT TCAAAACAAGATAAAGCTGAGAAATCTCCTCCACAAGAGGAAGAAGACACAGACAAAACAGAGAGTTTTGATGGGGACAG TGATTTTGACAAAAGCGATGAAGAATCTGAAAAGGATATTACTAGTTCTTCAAAGGATGTTATTAGAGCAAGGAAGCCTT CTGGGCGAAAGAGAACTACTAGACTCACATGACATATTATCTTCACCAACTAAGAGTTGATTTCTAACTTGGATTTGTCA TCTTTACAAAAATTAGTTAACTAAGATGAACATGTGTCACATATTTAGTGCCCCCATAATCATATAGAGCCATGCAAATC TTTGTTTTACACAGCTTGTTTGGGTTGGTTCAAGGGATAATGTAATGCTGTCCATGTTTTTGGTACAAAAGTATCATCAT ATTTTTGGTACAAAAGCCATCATTTAGCATAATATGTTATATTAGCATTATATAATATGAATAACTATACAATTTAGATC TTATTTTTTTATTAAATCAAAACCAAATGACACGAAGTTTCAG
CDS sequence (LotjaGi5g1v0187000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGACAAAGAGGCACACATGCCTGAAGCTCCAGATTCCAAATGCCAACGAAACCATATTCGTGAAGGGCACTTG GTTTGACACCCACTTCGACCTCGCCATCACCGACGGCGTCGCCGCCTGGCACTGCCACGCTTCGGAGGATGAAGTCAAGC AGCGTGCTGCTCAGTGGGACCAACCAGTTTCTGAGTACGTGGAAATGTCTGAACGCTACTTGGGGTTTCAGCAACCTGGT TCTGTGTATGCATTTGCTGATGCTGGTGATGGCCATAAGAGGTTGTCGTGGACCTTTGAGAAGGAAGGAATGACGCTGCA ATGGAGATGGAAATGTTTGCAGTCTTCTGATTGTAAGAAAACTACTGCAGAAATATTGGACTTTCTAATGGATGCAAACA TAACACTTAGTGAAGAAGTTGTCAGAAAAAATGAATTGTTTGAGAAGATGAAAGAGGAATCTGAGAAGTGCTTAGCCCAA AGTGAGAAGATTGCCAAAGAGAAGGTCGAATTTGAATCTGAAATCTATGTGAAGTTTCTGGGGGTCTTAAATTCTAAGAA ATCAAAACTAAGAGAGCTTCGAGATCAGCTTTCAAAACAAGATAAAGCTGAGAAATCTCCTCCACAAGAGGAAGAAGACA CAGACAAAACAGAGAGTTTTGATGGGGACAGTGATTTTGACAAAAGCGATGAAGAATCTGAAAAGGATATTACTAGTTCT TCAAAGGATGTTATTAGAGCAAGGAAGCCTTCTGGGCGAAAGAGAACTACTAGACTCACATGA
Protein sequence (LotjaGi5g1v0187000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWDQPVSEYVEMSERYLGFQQPG SVYAFADAGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKKTTAEILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQ SEKIAKEKVEFESEIYVKFLGVLNSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDKTESFDGDSDFDKSDEESEKDITSS SKDVIRARKPSGRKRTTRLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 243 | 241 | 2.6E-98 | ||
| Gene3D | 11 | 117 | 107 | 7.8E-6 | – | |
| SUPERFAMILY | 27 | 103 | 77 | 7.72E-5 | ||
| Pfam | 30 | 242 | 213 | 1.4E-21 | ||
| Gene3D | 119 | 212 | 94 | 6.3E-13 | – | |
| SUPERFAMILY | 119 | 207 | 89 | 2.22E-24 | – | |
| Coils | 183 | 203 | 21 | - | – | |
| MobiDBLite | 194 | 213 | 20 | - | – | |
| MobiDBLite | 194 | 260 | 67 | - | – | |
| MobiDBLite | 214 | 230 | 17 | - | – | |
| MobiDBLite | 231 | 247 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Double-strand break repair | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi5g1v0187000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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