Transcript — View — Lotus Base

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LotjaGi5g1v0189000.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0189000
Transcript ID	LotjaGi5g1v0189000.1
Lotus japonicus genome version	Gifu v1.2
Description	Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G23400.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp\|Q9LW57\|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic; TrEMBL-Plants: tr\|I3S0B9\|I3S0B9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0189000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:47827006..47829838) extracted from Lotus japonicus Gifu genome v1.2.

CGGAGAGATAGGTAAGGTGCAGAAAGCATTACGTGGCAAATAAGTAAGTGGTAACCAATACAAGGTTCCACACGAACTCA CTGTTCTTGTTCTACTTGTCTTCTTCTCTCATTCACAGTGTTTATTTACACACAAATCTCAATCACAAAACGCAATTTGA TTCTTTCTCCTCTAATCTCTCTTCATAGTTTCATCCTTTTCAATTCCCAAACTCACCCCTTTGAAAATTACTGCATGTCC ATGGCTTCTCTCAATTTTCCTCTTCACCCTCCACCTTCTCTCACTCACTCTTCTTCTACTTCTTGTTCCATTCCAAAGGG TTTTGTTCCATGCTACAACATCCATGCTCTCAAGCTAAAGGGTCACCTTCAAACCTCTCAAAGCAGGCGTTCTCTCCTTG TTGTGAAATCTGCTGTGGGTGAGGGCCGTGAGGCCTCTGTTGTTGACCCTCCTCCATCTACACCTGACTTCCCATGGGAC GCCCCTTCTAAATCGACTTTGAAGTTCAATCTTCTGGTGGGTTTTTGCTTTTCTTTGCAATTTTGCAGTGATTGACAATA TATATCTTGTTTGCTGATGGGGTTGTGAGTTGTCTGAAACTGCCTTCTTGATTGTTTTTTGACAAATAAAATGATGAATT TTATGAGTGGCTGGAAATGTTTTCATGCTGAGTGTTTGATTATTCAAAACTTAGAAAAGGGAAAGTGATGGGGCAAGTGA TTATAGTTTGAATTTTATCTATTTGATTTCCATGCTAAAATATTTATTCTTGATTCGACAGATGGTCAAATGCCTAAAAG GTTGAGTTTTTTTAGGACAATCACTTGTGGTCTATATATTCGGTTATAGATAGTTGTAGGCTTAGCAAAAAGTTAGTTGA TGTACACAATTGTTTCTCCCCTATAGAGTAGAGAGCATCATGATATCTCTTGTTTCAGGTTTGTGGACGGTATCTAACCT TTATAAAAGATTGTCTGTAAAAATATTGTACACAACTAGGTTTATGTTTGAAATCATTCTGCAGTTGATTCTAAAGCAGA ATCAATTCTAGGGTGAAGTGTCTGTGATTAGCTTCTAGGTTTTAGAATTGATTCTGATGAAAGAGAAGTCGATCCAAACA TGCTATACCTATGACAATAGCCACATGTTGGTTTAGAATGCCCATGAACTTGTAATTTTTGATAAATTTTTATTGTTGAT ATTTTTGGGGGGATTGCAAAACTTGTTTCTTATGTTTGAGTTATTAATGCAGAGTGCTGTTTCCGGGCTAAATAGAGGTC TTGCTGCAAATGAAGATGATTTACAAAAGGCAGATACTGCGGCTAAGGCACTTGAAGCTGCTGGAGGAGTAGTAGACCTC TCAGTTGAAAATATTGATAAATTGCAAGGAAGATGGAAACTGATATATAGCAGCGCATTCTCGTCCCGTACACTAGGTGG GAGCCGTCCTGGCCCTCCCACAGGAAGGCTTCTTCCTATAACTCTTGGACAGGTCTGGTACTGACTACATGTAATGATAT TATGGTAATTTATTTTTGTTTGATTGTATGTTTTCTAGTAGGAAAACTTCAAGTTAAAAATGATGCATATTGGTTTAGCA AGTTGAGGATTCTCATATAGCAGTGTATTCTCACTTTGTGCATGTTTAAAAATCCTTTTACAATTGATTTTAAGGTAAAA TAAGTTCTGGGAGAAGCTTCTGTGAGTAGCTTCTGGGTGCCACAATTGGTTCTGAGGAAAAAGTTGATTCATACATGCTA CAAGCCTGTGACCCTCCGATTTTTATTGTCATCTGCCATTTAATGATCTCTTTTACTTTCTTTTACCTGGAATTGGAAGA AATATATCAATTTTGACTGGTATCTGGGCTGAGCTACATGTTAGAATATTAGTACAACTTACAATAGATTTTGATTTGGG TCCTATGCATGTGCATTTGTCTGAATAATAATTTGACCCAAATGTTTAGTCTTCATTGAGTTTATGCTTTGTTTTGCTGA TAGGTTTTTCAACGAATTGACGTCTTAAGCAAAGATTTTGATAATATAGTGGAGCTTCAATTGGGTGCTCCATGGCCTCT ACCGCCCCTCGAAGCAACTGCCACATTAGCTCACAAATTTGAGCTAATAGGTTGGTTTTATGTTTTGTGCTTTTCTATTA TCTGTATATGCATAGTAACTTTGCATGATTGCAGATTGCTTCTATTTGACAGAAATTAGAATTGTAGTATAGTACTGTCT TGTGGCTGCTTTTTTATCTGTATGTGGGTGTGTAATGTTTCAGGATCCTCCAAGATCAAGATAAAATTTGAGAAAACCAC TGTGAAGACATTGGGGAATTTCTCACAGTTGCCACCCTTAGAGTTACCTCGAATCCCAGACGCATTAAGGCCTTCATCTA ACAGAGGAAGTGGTGAATTTGAAGTTACATTTCTTGACTCGGATACACGCATCACGAGGGGAGACAAAGGCGAGCTAAGG GTCTTTGTAATTGCATGAGTTCTCTATTGGACTTAAAAATCTCCCAACACCAGTGTCTATCATCTTTCTGTTTGTTTATT TTCTTTTCTTTTCTCTGTTGTAACATGTATACTATGTAAAACCACACTTTGTAGCTCCAAGTGAACATGATACTTTTTGT TTAAATGTAACATATATACTTCAACTTTAAAGAATAAATTCTTACTGATCATTCGATACGGGTGTTGAGAGAACTGCTTT TCAGTTTTAGAAACGGTTTTCTTTGATATAAGTTGTTTTTCCTCTGATGTTTTCCATGGCACAAATATTTCTGTACCTCT CAAAATGACAACATGGGTCTTGAGGTTCTGCAC

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0189000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCATGGCTTCTCTCAATTTTCCTCTTCACCCTCCACCTTCTCTCACTCACTCTTCTTCTACTTCTTGTTCCATTCC AAAGGGTTTTGTTCCATGCTACAACATCCATGCTCTCAAGCTAAAGGGTCACCTTCAAACCTCTCAAAGCAGGCGTTCTC TCCTTGTTGTGAAATCTGCTGTGGGTGAGGGCCGTGAGGCCTCTGTTGTTGACCCTCCTCCATCTACACCTGACTTCCCA TGGGACGCCCCTTCTAAATCGACTTTGAAGTTCAATCTTCTGAGTGCTGTTTCCGGGCTAAATAGAGGTCTTGCTGCAAA TGAAGATGATTTACAAAAGGCAGATACTGCGGCTAAGGCACTTGAAGCTGCTGGAGGAGTAGTAGACCTCTCAGTTGAAA ATATTGATAAATTGCAAGGAAGATGGAAACTGATATATAGCAGCGCATTCTCGTCCCGTACACTAGGTGGGAGCCGTCCT GGCCCTCCCACAGGAAGGCTTCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACGTCTTAAGCAAAGATTTTGA TAATATAGTGGAGCTTCAATTGGGTGCTCCATGGCCTCTACCGCCCCTCGAAGCAACTGCCACATTAGCTCACAAATTTG AGCTAATAGGATCCTCCAAGATCAAGATAAAATTTGAGAAAACCACTGTGAAGACATTGGGGAATTTCTCACAGTTGCCA CCCTTAGAGTTACCTCGAATCCCAGACGCATTAAGGCCTTCATCTAACAGAGGAAGTGGTGAATTTGAAGTTACATTTCT TGACTCGGATACACGCATCACGAGGGGAGACAAAGGCGAGCTAAGGGTCTTTGTAATTGCATGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0189000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSMASLNFPLHPPPSLTHSSSTSCSIPKGFVPCYNIHALKLKGHLQTSQSRRSLLVVKSAVGEGREASVVDPPPSTPDFP WDAPSKSTLKFNLLSAVSGLNRGLAANEDDLQKADTAAKALEAAGGVVDLSVENIDKLQGRWKLIYSSAFSSRTLGGSRP GPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGSSKIKIKFEKTTVKTLGNFSQLP PLELPRIPDALRPSSNRGSGEFEVTFLDSDTRITRGDKGELRVFVIA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR31906:SF15 View details on PTHR31906:SF15 Search for proteins/transripts with this domain View external data on PTHR31906:SF15	86	286	201	6.6E-98	–
PANTHER	PTHR31906 View details on PTHR31906 Search for proteins/transripts with this domain View external data on PTHR31906	86	286	201	6.6E-98	IPR039633 Show description in modal box View details on IPR039633 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04755 View details on PF04755 Search for proteins/transripts with this domain View external data on PF04755	88	284	197	2.6E-46	IPR006843 Show description in modal box View details on IPR006843 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	104	124	21	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0189000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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