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LotjaGi5g1v0189500.1

Overview

Field Value
Gene ID LotjaGi5g1v0189500
Transcript ID LotjaGi5g1v0189500.1
Lotus japonicus genome version Gifu v1.2
Description Phosphatase 2C family protein; TAIR: AT3G23360.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9LW60|P2C44_ARATH Putative protein phosphatase 2C-like protein 44; TrEMBL-Plants: tr|G7I4V1|G7I4V1_MEDTR Phosphatase 2C family protein; Found in the gene: LotjaGi5g1v0189500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:47882315..47885436) extracted from Lotus japonicus Gifu genome v1.2.

CATGTGTCATTTCTCCATGAAAGTTTTCTCCTCCATTGCCGTTCTCAAATATTTATTGATATTATTCTTCTTCTCCTTGT TGAACGTTTTGTATTGTTTGGAACAACTATGTTCAATATAAATCACAATAATGAATGCTCTATTGTCTTTAAGAAGCAAG TCAACTATGTCATTTACTGATAGTTGATACTACAGTTACCAATTTAAGAATAAAGGCAAAATAAAGAGCGTCTCTAAGTG GTCAGTTACATGCTCCCAAAGAGTAGATTTAATAAACCTTTAATTGTTAGTCAAAGTCTTTAATTGACAATTAAAGCTAA TTAGTTTTCTCAATTGAGCAGCTTCAGAATTCCTGAACCAAAAAGCTATAGTTTCACTATGCTCTAGAGGCAGTATCTTT GGGTCTAGGTTTTTCTTTTGGACAATCTTTCTCCATGTGAGTATTGAGCACGGTTTCCCAACACATAGGGATCACTTTGT GGTCAGTGCCAAAGAAGAGAAAAAAAGGCCAATCCATTTGTTACTCAACACCAATATTGAGTATATATTGACACAAGCCA AAAGAATGAGGCCCTTCTTATTTTCTATCTAAAAAACTTGATTTGCTATCTTTTCTTGTCATCACATCCTGCAAGTATAA GATTTTTCCCCTTGAAAGTCTGATCAAACAATAGAGAAAAACATGGGATTCAGATATCTTCGTCTCAAGCTCAAGGTAAG CCAGTATTGTTTTTCCATTTCCCTGTTACATTGAGATTGTTCTATGAATCCATGAGAAACAGATTAATGAATGTGAGTTC TGTTATAGTTTTGCTTTCTGCATGATAGACTAATTGCCAAAACAAAGTAACTTCAAGACAAAAAAATTGTCTTGATCCTT TTCAATATTTTTATTTTGTTTTCCCTTCATCTGTATAAATGTTATATATCCTAGCAAGAATTGGTGATTTAAAGCAAGAG CTAATCTATGGATGAACTTGAACAGGTTTTCCGGCTAAAACGGATTCTGCTACGACTTGCAGGCAGGAAGAGAAAGCTAT TGCCAGCAAAGAAGCCTTCATGGATGACGCCGGTAACACATGGTTATCGTGTGGTGCAGCATCATGTGATCAGAGATGGC TCTGATGACTCAGACCTTGATTCAGTGGTGGTCCAAAGAGAGCAAATTGATCACACAGAACTGTGGTATTTTGGAATATT TGATGCACTGATTGGAGACAGGGTTACCAAGTACATGCAATCCCATTTATTTGGCAAGAAGCTTCAAGAGGTTGTTGATG AGTTATTCATTTATTCGCTCCAATTAAATTTTTATACTGCATCAATTCAAGTGACTGTTAATTTTGCTTAATGTGTTGTC AAAGAGAGGTTGAAATTGAGCTGCTTTATTCATGAATTTTCCTTTAGTCTCTTGTATTTTTTAGCATCTCTGTCTTTCTA ATGTTCTATTTAATATGTTAGGCTCATATAAGGAGAAAAGGTAAAGAAACTCTGAAGAGAGCTTACCTGGGTGTAAGGGC AAAGATCAAACAGGAACAGAAATCAGAAGAGACATCCAGAATGGGTTCAGCATCTGCTATGGTAATCAATGGAGAAAAAC TTGTGATAGCCACCATGGGAGATTACAGAACTGTAGTGTGTAGAGATGGCATAGCTTATGAGACAACCAGCACATACAAC CAATCAGCCAAAACACATTGGTCTCGCAGGCTCTTTGCAGGTATTTAATGCTAAAGATTTATGTAGAATCACTAGAATGA GATGTTCAGTTTGTAAGGCAATGCTAATGGGAATGATTTTGAAACCACAAAGTTGAAGTTCTTACTTCTTAGCACTTGCC CAATTTGGAAGAACTTATTTGAGTTTATCTTATAGCATAAGCGCTTATGCAAGTGTTTGCGAGAGCTTATGCAAATAACT TATGGCTATCTATAAGTTGTTTTCAGCTTATTTTCACAAGCTATTCAAATTAGCTTATAAATAAGAGCTTATGCTTATCT ATAACTTAGCTTCAGCTTATTTCAATAAGTTTTTTTAAATTAGCTTATGAATAAGCACTTAAGTGAAAAGCGCTTATGAG TCTATGACAATAAGCGTTTAAATAAGCTTTTACCCAAACACACCAAAACTTCACCAAGCATGTTTGTAAACCCAACTAAG AACCCAAAAAAATTCCTATTCAAATGATGTTAACTAGAGAATGTTATTAACTGATAAAGAAAAGAAATCAGAATATGTTA CCCCAGTTGTTTCACTTAACTCATGAACATGTTACCCCATAATCTGTTCATATAAATGGGCTCATAAATTTTATTCACTT AACTCATACTAGTATGTGAATCAGGTAATACAGCATATACAAGGCATTTTAGAGGCCCAGAGCTTGTTATCAGAGGTGAA AGCATTGATTCAGATACTGAGTTTTTAATATTAGCAAGCAGTGGCATATGGGAGGTAAGCTGTAATATAAACTATTGCAT GTTATATTCACAAACCCTGTCTTTTTGTTGTCATCACCCTCTCAAACATGTAGATATATATAAACAAAAGTAAATATCGT TTTGCTTCTTATTAGTGAGATTTTTTGCTTAAGGAGTGCTCAACCATAGTCATTTCTAATAAAAAAACTAATAGCAAATG AATCTCCATATTTGGGCAGGTAATGAAGAACCAAGAGGCTGTGAATCTGATCAGTCACATAGAGGATCCACAAGAAGCAG CTGATTGTTTAGCAAAGGAAGCTTTAATTAGAATGAGCAGAAGCAACATTTCATGCTTAATCATTCGTTTTGACTAAAAT GTATACCAAAGCTACTTACAGCATTGACCCTTTATTACATTACTGCCGATCATAATCTAGCTATCTGCAGAGATTTCATG ATCCAGCTTCATCCAAAAAATTTCACAGATTGAATTGGATTGTTTTTGAAGAAAACTAACAATCAAATCTCTTCAATTTT CTTATATTATCATCCAATCAAATTATTTCTAAATTCAAATCCAACTCAATTTAATCTTTAGATTAACTTTTTAATTTTCA ATGATGGGTAGATAGTATCCAAGTCTTAAAATACTATGGAAGATAATTTAAAGTATCAAATATGTAATTCATAAATCATG AC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0189500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATTCAGATATCTTCGTCTCAAGCTCAAGGTTTTCCGGCTAAAACGGATTCTGCTACGACTTGCAGGCAGGAAGAG AAAGCTATTGCCAGCAAAGAAGCCTTCATGGATGACGCCGGTAACACATGGTTATCGTGTGGTGCAGCATCATGTGATCA GAGATGGCTCTGATGACTCAGACCTTGATTCAGTGGTGGTCCAAAGAGAGCAAATTGATCACACAGAACTGTGGTATTTT GGAATATTTGATGCACTGATTGGAGACAGGGTTACCAAGTACATGCAATCCCATTTATTTGGCAAGAAGCTTCAAGAGGC TCATATAAGGAGAAAAGGTAAAGAAACTCTGAAGAGAGCTTACCTGGGTGTAAGGGCAAAGATCAAACAGGAACAGAAAT CAGAAGAGACATCCAGAATGGGTTCAGCATCTGCTATGGTAATCAATGGAGAAAAACTTGTGATAGCCACCATGGGAGAT TACAGAACTGTAGTGTGTAGAGATGGCATAGCTTATGAGACAACCAGCACATACAACCAATCAGCCAAAACACATTGGTC TCGCAGGCTCTTTGCAGGTAATACAGCATATACAAGGCATTTTAGAGGCCCAGAGCTTGTTATCAGAGGTGAAAGCATTG ATTCAGATACTGAGTTTTTAATATTAGCAAGCAGTGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAATCTGATC AGTCACATAGAGGATCCACAAGAAGCAGCTGATTGTTTAGCAAAGGAAGCTTTAATTAGAATGAGCAGAAGCAACATTTC ATGCTTAATCATTCGTTTTGACTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0189500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGFRYLRLKLKVFRLKRILLRLAGRKRKLLPAKKPSWMTPVTHGYRVVQHHVIRDGSDDSDLDSVVVQREQIDHTELWYF GIFDALIGDRVTKYMQSHLFGKKLQEAHIRRKGKETLKRAYLGVRAKIKQEQKSEETSRMGSASAMVINGEKLVIATMGD YRTVVCRDGIAYETTSTYNQSAKTHWSRRLFAGNTAYTRHFRGPELVIRGESIDSDTEFLILASSGIWEVMKNQEAVNLI SHIEDPQEAADCLAKEALIRMSRSNISCLIIRFD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF595
2 274 273 2.2E-109 –
PANTHER
PTHR13832
2 274 273 2.2E-109
IPR015655
ProSiteProfiles
PS51746
42 273 232 24.171
IPR001932
SMART
SM00332
49 271 223 3.4E-16
IPR001932
Gene3D
G3DSA:3.60.40.10
50 197 148 1.4E-12
IPR036457
SUPERFAMILY
SSF81606
63 274 212 7.32E-30
IPR036457
Pfam
PF00481
79 177 99 1.2E-8
IPR001932
CDD
cd00143
79 273 195 4.73311E-33
IPR001932
Gene3D
G3DSA:3.60.40.10
198 274 77 3.7E-16
IPR036457
Pfam
PF00481
211 266 56 9.6E-11
IPR001932

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0189500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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