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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0189900 |
| Transcript ID | LotjaGi5g1v0189900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/VHS family protein, putative; TAIR: AT3G23350.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|G7I4V3|G7I4V3_MEDTR ENTH/ANTH/VHS superfamily protein; Found in the gene: LotjaGi5g1v0189900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47928925..47932460) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTAATAGTGGTTCAATCTCTCTGTTTTTCTTTTCCTCTGTTTTCCTTTTGTCAATGAGCATTTTTCCTGCATTGTC TGAGCTATAATTTTGGCTATCCATAAATGTGTTATCATAGCCTGCAACTAACTCACATCCATGCTTTGCCTTCTTTCTCA CATTTGTCATTAGTCTCATGTTTTAGTCATTTCCTAGGAATTTTGTTGGAAGTTTATCCAATATCATAACAAAGTACCAC CCAAAAATATATAATTCAAACATATTAAGGGAACTATATCCACAATCAAACAGTTGAAAGTTTGATCTAAGTAGAGATGG GTAGCCTATTGCTAGAACAAATGAAAAAGCAGACATCAAATTTCCTCCAAGAAAAGTACAAATCTGCTAGGATGACGTTT ACAGATGTTACTGAAATTGAATTGTAAGTGTTGTGTGTGTGTGTTTAAGCGCATATGCAGAAACTTAGTGCATGGATGTC TCATGGAAAATCACATGCAGTCAAAATCACGGTGGACTAAAGTAATTTTTTTAGCTTTTGTAGTTGTCCACCGTGATTTT GACTTCATTGTAGTTTTTTCATTGTGTATCCAAACATGAACCTAATAATTTGGTTAAGAAAGTAAAAGAAGAATAACTAC ATGTATAATTTCTTATAAAAAATTATATGCTATGCATGCTCACCCATTTTTCTGCTAAATAAAATACAACTCTTAATTTC TTTGTTTGTTAATAGTACTATATCCTTAGGCTGACTGAGGAAGCAACAAATAAGGATGATTGCAGCCCTGATGCCAAAAC AATGACTAGAATTGCAGAGGCATCCTTTGACATTGATGAATATTGGAGGATTGTTGATATTCTTCATAGAAGGTATGCTT GTTCACTTGATACATTTTTTATACATTTCTTAAGATAGTATATTTCTTTAAAGTTTACAAATGCCCTTCCTCTAAAGTTT ATTTCTTTTGTTGTTTACTATTAATTATATCATCCAAAGGGCAGGTTGTACAGTATTGATTGGGAACAATGGAGGCAATC TTACAAAGCACTAGTTCTTCTTGAATTCATGCTAACACATGGTCCTGAAGAGTTTGCTCGAGAATTTCAATGTTATACGG GAATTATTGAAGAGCTAGGAAGTTTTACTCATATTGACGACAAAGGGTAAACGTTAAATCCGAGCCATTTGTTGGAAATC AATTGAAGATGTCATCTTCTGATTATTCTCATTCATTTTACAATAGCGAGGTTATAAACTGAGAGGTATGGGAAGCAAAT GAGGGCAAAAATTTCAAATTAGCATGTAAGGTATACAACAACTTATGATTATGTTGGCAACAACATAAAAAATCAAAGTA TCGCATCCGTCTTCAGGACGATCTAGGCACAAAGTTTAACTTATTAATTAGGAGGAGATTTTGCCCCCAGTGTATCTCGA AAGCAGAAAAAATAGAACTCATTCGAGAGAGCTTGGTGGTCTTAACTCTTACGAATGATTCGGGTTGGGGGTTCTCTTAA GAATAAATAAGCCGAATAGAATCTAATTCATGTCCATGCTAACAGAAGAGCAGATAGGCAGATCACTAAGGGGGTAGACA CCCAGATAGAAAAAGAAATAATAGTTGTGATGTTATCAGAAGTGGGGAATATATAAAACAAAAGTGTTTAAAAAGTGTAT GTAATAGTGTTGGTGGTTCACCAATCATAACCCAAAATCTAAAAGATACAAGTTTGTCAAAGTGCATGGTAAAAAAAGAA AAATAATTTGTATTCCTACGCATAATGTAGACATCAAAAGACACTTGAAAGTGAAAAAGGAAGAGAAGAGAGGGAAATAA TATGGTAGGAAAAAGAGATTGAGAGAAAAATGAGACATCTGCTGGATATCTACACTATTTGTATATCTGTTACCATCACA ACAACGATCAGTAGTAACAGGAAATGTTTTAAATTACTGCATCAAATGAAATTAGAAGGAGTTGGGGAGAGTTTTGGTGT TTTCACCGGTAGGAATTGTTGGTTTTTTGAGTCTAAGATGGGAGAAAAACAATTGCTTGTTATTTCATTCATAGAAAGAT TTACTAAATAAATAGAGTAAATAAATAGAGTGAGGATAAGATTTCTGCTACAACTTGACAGCACATTGTTTCTTGAAAAC CACAGAAGTAAAAGCAACTTAAGCATGTAACCTATCAACCTATCTAATGATGTTTTGAATATCATAATTACATTACTTCA AAAAGCTTCATAATAAACTTAGTGTCCAGAATCTAAGCAAAAGACTCAACACCATCAAAAATACATGAACACTAATTGAT ATTCATACCTTTCATTTTACTTTAATTTTCTTATAAATTCATTACTTTTAGTTTCATTTCTAATTTGAAGCAAAATTAGT TTGGAAGTGAGGGTTGTTCTATATAAAGATTTATTTGGTCATATTTTTCATCAATGTCTGATCTAAGCACACCCCCAAGG TTGAATATTTGGAGTGTGAAATTTGCAGGAATTGAGATATGCATGTGACCCATATATGGGTGGTCTCAAATAAACGATTC TAGAATAACCTTTAATACCATCTTGAAATTTGAGTTTTGTCTAACCCAGATTGTAATAGAAATTGTTATTTGTTTCAGGT TTAACTGGGGATCTAGAATGCAAAATCTATCAGACCAAATACTCAAACTCCTACAGAGTGGAGAAGCTCTCAAAGAGGCA CGTTTGAAGGCTCTCAAAATAACTAATGAAATACAAGGATTTGGAAGTTCACTAAACTCTCCATCATCATCAACATCACC CACCTCATTGTTTTCTGAAGCATCACCAGGCTCTTCATCATTTAGTTCATTTTCTACCTCGAGTACTCCTGCAAGTTACA TTTGTTCTAGTGATCATCATAAAAATGTTGTGTCCCCATCAAATAATGTAAAGCATGTGGATGAAAACCACCTTTGGGAT GGTCCTGGAAGTGAGGAGAAGAATGTTTTGGTGGATTCTGATGAGGATGCAGGGGAAGTGGGAAAACCAAAAGGGTTTGT GAGTGAAATGTGCTCAAAGATTATTGGTAGTGGCAAAATGGGAAGTCGTGAAAAGATTGAATTCAGATGCATCTCTGATG TTGGGAGCAAGGTGACTAAAAAGAGATTTGATCGCCAATATTCTCTTTGGTTTTAAAGGATAGGAGACAAATGTGGTCAT GTCTCCATTTTGTCTGATGTGAAGTACAAAATTTGATATATATCATTTTCTTCTTGAAGATGCATATAATTACTAGTTGA GTCGAGAGTGAAGTCACTTTTTTACTACTTCGATCGAAAATTATTACTACACATTTGCATGCAGACACAAAAATAAGTAA GAAAGAAATGGATGAGAGAAGTAATACATGTGTTATATGATAGATGCAATGAGAACTAAGAGATAGATAGAAAAATATAT GTATTTCAATGTTTACATCAAATATATGATACTATTTTAAATTATATATGATATTGTTGTTGCGATATCAAGTATGAGTA AGTCACACATTGGAAG
CDS sequence (LotjaGi5g1v0189900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCCTATTGCTAGAACAAATGAAAAAGCAGACATCAAATTTCCTCCAAGAAAAGTACAAATCTGCTAGGATGAC GTTTACAGATGTTACTGAAATTGAATTGCTGACTGAGGAAGCAACAAATAAGGATGATTGCAGCCCTGATGCCAAAACAA TGACTAGAATTGCAGAGGCATCCTTTGACATTGATGAATATTGGAGGATTGTTGATATTCTTCATAGAAGGTTGTACAGT ATTGATTGGGAACAATGGAGGCAATCTTACAAAGCACTAGTTCTTCTTGAATTCATGCTAACACATGGTCCTGAAGAGTT TGCTCGAGAATTTCAATGTTATACGGGAATTATTGAAGAGCTAGGAAGTTTTACTCATATTGACGACAAAGGGTTTAACT GGGGATCTAGAATGCAAAATCTATCAGACCAAATACTCAAACTCCTACAGAGTGGAGAAGCTCTCAAAGAGGCACGTTTG AAGGCTCTCAAAATAACTAATGAAATACAAGGATTTGGAAGTTCACTAAACTCTCCATCATCATCAACATCACCCACCTC ATTGTTTTCTGAAGCATCACCAGGCTCTTCATCATTTAGTTCATTTTCTACCTCGAGTACTCCTGCAAGTTACATTTGTT CTAGTGATCATCATAAAAATGTTGTGTCCCCATCAAATAATGTAAAGCATGTGGATGAAAACCACCTTTGGGATGGTCCT GGAAGTGAGGAGAAGAATGTTTTGGTGGATTCTGATGAGGATGCAGGGGAAGTGGGAAAACCAAAAGGGTTTGTGAGTGA AATGTGCTCAAAGATTATTGGTAGTGGCAAAATGGGAAGTCGTGAAAAGATTGAATTCAGATGCATCTCTGATGTTGGGA GCAAGGTGACTAAAAAGAGATTTGATCGCCAATATTCTCTTTGGTTTTAA
Protein sequence (LotjaGi5g1v0189900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLLLEQMKKQTSNFLQEKYKSARMTFTDVTEIELLTEEATNKDDCSPDAKTMTRIAEASFDIDEYWRIVDILHRRLYS IDWEQWRQSYKALVLLEFMLTHGPEEFAREFQCYTGIIEELGSFTHIDDKGFNWGSRMQNLSDQILKLLQSGEALKEARL KALKITNEIQGFGSSLNSPSSSTSPTSLFSEASPGSSSFSSFSTSSTPASYICSSDHHKNVVSPSNNVKHVDENHLWDGP GSEEKNVLVDSDEDAGEVGKPKGFVSEMCSKIIGSGKMGSREKIEFRCISDVGSKVTKKRFDRQYSLWF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 1.2E-128 | – | |
| PANTHER | 1 | 309 | 309 | 1.2E-128 | – | |
| SUPERFAMILY | 12 | 159 | 148 | 2.62E-36 | ||
| ProSiteProfiles | 26 | 159 | 134 | 29.786 | ||
| Gene3D | 28 | 175 | 148 | 2.9E-39 | ||
| Pfam | 32 | 154 | 123 | 1.2E-26 | ||
| SMART | 32 | 159 | 128 | 2.1E-14 | ||
| CDD | 34 | 150 | 117 | 2.85032E-43 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0189900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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