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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0190100 |
| Transcript ID | LotjaGi5g1v0190100.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT5G28850.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5QIT3|2AB2B_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta; TrEMBL-Plants: tr|A0A151R6C4|A0A151R6C4_CAJCA Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; Found in the gene: LotjaGi5g1v0190100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48244552..48248407) extracted from Lotus japonicus Gifu genome v1.2.
ATAGAATTGCCATATATGTCTTTGGAATTTGACTTACTAGAATTTGAAAATAAGAACTTCAACGTTTAAACCTATTTTCT TGTTTACCATTCTTTTTCTACATACACATATATTTTATGTTATTGAAAATGTTCTCAGGCTATTCCTTACTGCTGCATGT TTTGTCCTAAAACAGCTGAGACTGTCATCCATAGAATATTTTACTACATGAACAGATCAGGAAATGGCCGACTTACCCTG AGGGAGTTGAAACGTGGGAACCTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATATTAACAAAGTTCTGAGGTA AAGGCTTTTAGCTGAAAATATGTGAAAAATCAACTAGACTTTTGATTGAAAGCATGCCGTTGCTGTCTTTGGAATATCCT TCTACTATTTGTTGGCACAAACTCCTGCAAAATAATGCCTTTGCCAAGAGAAGTCGATGATCTTGATCCTTGCCATTCTT GGATCGTTTTTTTCTCTCTCTATTGAACCAAACAAGAGGAAAGTTGATTTTTTGTCTCATTTTCTGTACTTCTATTTTCT GTTTATCAGAATACATATAAATCTAACTGACTGTAGCCTAACAGAAATCTAACTAACTGAACTGACTTGACAGCTCGTAC TCTATCTGAATAATAGAACTCTAGGTACTATCTCCATTCTATACCATATCAATATTTGATGCTAAGAGATAACCACAAAT ACACGAGCAACTTCCTTTGTGCTTGGTCTTGTGTTCAAACTTGAGTCATATTGGTGTATATAGTCTTCTCTGTAGTCTGG ACAATACATGAAGTTTCTGCCATCTAGCAGTTTTGCTGCCAGAAGTCAGTATCTGCTTGTGTCAGCTGAGTCAGTCAGTA TCTGTTGGTTATTCTGTTAGAATATTTTATTCGTTGGTTAATGGATATTGTTTGTGAACCAGTTCTATCTTCTATGTACC TAACAGTATGAGGCTTCAAGTAAGTAAAATAAACTCAACAAGCTTCTCTTCCTTCTCTCATTTTCTGTTACATTCTATTT AATTGTCTGATATTTATCGAGTCATTTGATCCCAAAAATGTTGCTAGCCCATGATTAACTTCGGTTTCCAATTTGCTTAT CCCTATAAAAATTAAATTTTATTTTTATTTGCTTCATAAATTTTTACGTAATTTCAGGTACTTCTCATATGAGCATTTTT ATGTCATTTACTGCAAATTTTGGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGAGAACCTTATTAAATATGGG AACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTCTGTTGATATTCATTTTTGTGAATGTACTGAGT TAATTTTTTTTTAATCTTTTTTATCTAAGTTGTGTCACTTGTGTGTTTTTACATATCCACCTCAAACTTTGTTGGATTTG ATTTGCTTTTAGTTTAAATTATTTAATTGGATACTTTTACCCTTATTAGTTTATCATAGGGTTAACAATGTAAATTACTG AACAAGTTCCATTCATTTTTAAGGTGCTCAAATTTTGAATTTGGTTTGCAAATCAGTTCATATTCTTTTGTTTGATAATG AGTTCTGAATATTGGAATTGATTCCTTGATTAATAAAATCAGTTCTATATTTTAATTTTTTTTTTACTTGTATATGCTTA AACTGTGCCAGGTCTCAAGGAAATTCACCAGTAAAGTTGAAGGGAAGATGAATTATGAGGATTTTGTTCATTTCATACTT GCAGAGGAAGATAAATCATCTCAACCCAGTCTGGAATACTGGTATACTACCAGACCTTCTCAAATACTGGGGATCCTTTT AGGAGCATGGAAAACCATGTCTTTACTTACATATAGCAACTTCGATTTATGCTGAAATTTTTCTAATAATAATATGGAAA ATGTTGGTGTCAGACTCGTTGGGTCTAAAGATAAAAGTTCCCTATCATGTATTTTATAACTGTTGAGATCCCACATCTTC TAGGTATATGACCAAAGTAGAGCTTATACATGCTTGGGAAATCCTCACCTCATGAGCTAGTTTTTTGGTTTGAGTTATTT TCCAGTGCAATCTACTTCTTGGCCATGTGGCTTTTACAGTGCAATAAAAAATTGTTCTATAATAGCCACGCTCCAGATGT CCAATTTTGAATGTGGCGGGGGGTGGTGAGACTTTAGATCCCTCGCCAACTAGAGATTTGACCAAAGTAGAGCTTGTAAC GGTTTGTGCAATAATCACCGGATGAGCTAGTTTTTTGGGGAGTTAGGCTTATCACAAATTTAAGAGTGACATTTTTAGTA CAAACATCGTTTTACACAACATAGGTACTTCATTAGTGGTTCTTTCCCTGAGCTCTTTTGTTACATTGGATCCATATTTT TTATGCTCTTTTATATTGTTATTGTTCGGTTATTAATTTTATTAAATCAGGACTCTTTTTAACAAGCCGTCTTATGCAAG AGTCCATTGCAAGCGTGGACAATGTACATGCTCAACTGTCATGTGCTGAAATTTAACCATTTCTTTATTTGAATAATGGT GCAATGAGGATCAAACTCTAGGCGACTTGGTCATAAGGTTTTGATACCTTTGTCATGAACTAACTATCCCAAAAGCTGAA GCTGTTGGGCACATGAATGAATTGTATTTATATTTCTAACAGTAAGCATTTACATTGAAACAAACAACTCGAGTCATTAG TGATATTTGGGACATTCTAATGTATTGACTCTTTCTTATGCCATGTTGAATTAATATTAATTTCTCCTTGGTGAATAATG ATAGTTTTGTATACTTGATGCTCTCTTTTCATCTATTCCTTACTGTTCATAGTTTCATACATGGAAAGCTGATGTTTTCT TAGCTTTAACCTAATACTATATCTGTTTATCTATATATTTTTATATTTATCTAGTTATAATAATACACCAAAGTTTGGCT TTCGTGTGAATAAACAGCAAACCACCATAATATCTAACAACTTCAACATTCATGGCAATGGCATCCTTTAATTTAATCAT CCCCTCACTTGCATGGGCTAAATGTTTTAGATTAGTTGGAGCTTCCTGCTTAGTTTTTGGAATTCACTGTTGTTCTTGTC TGTAGATTCATTGTCTGGGACACATAATTCGAATTTCATTTGCTGCAATTTCTTTTCCAAATTCCTCAGCTTTGAAATAG AAACTCAAGATTTTTTTATTTTTTTATTCGTGTAGGTTCAAATGCATTGATTTGGATGGAAATGGAATACTGACATCAAA TGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAAGAGCCAGTGCTTTTTGAAGATATAT TATGTCAAATAGTTGATATGATCGGACCAGAGGTCTCTCCTTTGTTCTTGTTCTTACATCTTTGGTTCTTTTTTATTTTT CTTTTCTTGGTTCAGTTTCATTCCTCTGCAGCATAGTAACTGTCCTATGTGTGCAGAATGATGGATATATCACATTACGA GATGTAAAAGGCAGCAAACTTTCTGGAAATGTCTTCAACATTCTTTTCAATCTCAACAAGTTTATTTCTTTTGAGACTCG GGATCCGTTTCTCATACGTCAGGTAGACGCAAGTTTTAGACCCTACTTCACTATCAGTGAAGGCTCTTAGCAAATATTTG TTGATAAATTCTGATTCCGATGGCATGTTGTCTAGGAACGCGAGGATCCAAATATGACAGAGTGGGATCGTTTTGCGCAT AGAGAGTATATTAGGCTTTCTATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCTGGGAAGAATCACT TGAGGCCCCATTCTGA
CDS sequence (LotjaGi5g1v0190100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTGGAATTTGACTTACTAGAATTTGAAAATAAGAACTTCAACGCTATTCCTTACTGCTGCATGTTTTGTCCTAA AACAGCTGAGACTGTCATCCATAGAATATTTTACTACATGAACAGATCAGGAAATGGCCGACTTACCCTGAGGGAGTTGA AACGTGGGAACCTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATATTAACAAAGTTCTGAGGTACTTCTCATAT GAGCATTTTTATGTCATTTACTGCAAATTTTGGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGAGAACCTTAT TAAATATGGGAACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTCTCAAGGAAATTCACCAGTAAAG TTGAAGGGAAGATGAATTATGAGGATTTTGTTCATTTCATACTTGCAGAGGAAGATAAATCATCTCAACCCAGTCTGGAA TACTGGTTCAAATGCATTGATTTGGATGGAAATGGAATACTGACATCAAATGAAATGCAGTTCTTTTATGAGGAGCAGTT GCATCGGATGGAGTGCATGGCCCAAGAGCCAGTGCTTTTTGAAGATATATTATGTCAAATAGTTGATATGATCGGACCAG AGAATGATGGATATATCACATTACGAGATGTAAAAGGCAGCAAACTTTCTGGAAATGTCTTCAACATTCTTTTCAATCTC AACAAGTTTATTTCTTTTGAGACTCGGGATCCGTTTCTCATACGTCAGGAACGCGAGGATCCAAATATGACAGAGTGGGA TCGTTTTGCGCATAGAGAGTATATTAGGCTTTCTATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCT GGGAAGAATCACTTGAGGCCCCATTCTGA
Protein sequence (LotjaGi5g1v0190100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLEFDLLEFENKNFNAIPYCCMFCPKTAETVIHRIFYYMNRSGNGRLTLRELKRGNLIEAMLHVDEEEDINKVLRYFSY EHFYVIYCKFWELDADHDFLIDRENLIKYGNHSLTYRIVDRIFSQVSRKFTSKVEGKMNYEDFVHFILAEEDKSSQPSLE YWFKCIDLDGNGILTSNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMIGPENDGYITLRDVKGSKLSGNVFNILFNL NKFISFETRDPFLIRQEREDPNMTEWDRFAHREYIRLSMEEDGEDMSNASGDVWEESLEAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 81 | 62 | 1.1E-19 | – | |
| PANTHER | 24 | 302 | 279 | 1.3E-192 | – | |
| PANTHER | 24 | 302 | 279 | 1.3E-192 | – | |
| Pfam | 27 | 68 | 42 | 5.5E-11 | ||
| ProSiteProfiles | 28 | 63 | 36 | 5.782 | ||
| SUPERFAMILY | 67 | 223 | 157 | 1.01E-25 | ||
| Gene3D | 82 | 249 | 168 | 9.2E-65 | – | |
| Pfam | 83 | 183 | 101 | 5.7E-16 | ||
| ProSiteProfiles | 154 | 189 | 36 | 9.548 | ||
| ProSitePatterns | 167 | 179 | 13 | - | ||
| MobiDBLite | 282 | 302 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0190100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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