Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0190100 |
| Transcript ID | LotjaGi5g1v0190100.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT5G28850.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5QIT3|2AB2B_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta; TrEMBL-Plants: tr|I1NI86|I1NI86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0190100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48244552..48248906) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCACATCGATCATACCTTGTACAGGTTTGCCT GCCATACCCTTACTCCTAAGTATTTTGTTATTTGTTATCTCTCAACTTGAACTACGAAGGGCTTAATGAAATGTTATATA TTAGGATGCATTTATGTTTTCTATGTTGGGTGTAGGATGATTTCAAACCTATATTGAGGGAACTATTGTCCACTCATCCT GGATTGGAGTTTTTGCAAAACACGCCTGAATTTCAGGAAAGATATGGTATGATCATATTCTTTGGATTGACAACTTTTTT GTTTTTTTTTCAAGTCTGAATTTTATTTCTAGTGCTTCTTTTAAAAACAACTTAGTTTACCCACCACATCCATTACATGT GTACTTTTTCCCTATGTATTACTTGTGTAGGGGGATAAACTTTTTTGTATTACGTTATAATCTAATTATAATTGGGGATT TGGGGATTTAATTGCAGTCATAGAATTGCCATATATGTCTTTGGAATTTGACTTACTAGAATTTGAAAATAAGAACTTCA ACGTTTAAACCTATTTTCTTGTTTACCATTCTTTTTCTACATACACATATATTTTATGTTATTGAAAATGTTCTCAGGCT ATTCCTTACTGCTGCATGTTTTGTCCTAAAACAGCTGAGACTGTCATCCATAGAATATTTTACTACATGAACAGATCAGG AAATGGCCGACTTACCCTGAGGGAGTTGAAACGTGGGAACCTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATA TTAACAAAGTTCTGAGGTAAAGGCTTTTAGCTGAAAATATGTGAAAAATCAACTAGACTTTTGATTGAAAGCATGCCGTT GCTGTCTTTGGAATATCCTTCTACTATTTGTTGGCACAAACTCCTGCAAAATAATGCCTTTGCCAAGAGAAGTCGATGAT CTTGATCCTTGCCATTCTTGGATCGTTTTTTTCTCTCTCTATTGAACCAAACAAGAGGAAAGTTGATTTTTTGTCTCATT TTCTGTACTTCTATTTTCTGTTTATCAGAATACATATAAATCTAACTGACTGTAGCCTAACAGAAATCTAACTAACTGAA CTGACTTGACAGCTCGTACTCTATCTGAATAATAGAACTCTAGGTACTATCTCCATTCTATACCATATCAATATTTGATG CTAAGAGATAACCACAAATACACGAGCAACTTCCTTTGTGCTTGGTCTTGTGTTCAAACTTGAGTCATATTGGTGTATAT AGTCTTCTCTGTAGTCTGGACAATACATGAAGTTTCTGCCATCTAGCAGTTTTGCTGCCAGAAGTCAGTATCTGCTTGTG TCAGCTGAGTCAGTCAGTATCTGTTGGTTATTCTGTTAGAATATTTTATTCGTTGGTTAATGGATATTGTTTGTGAACCA GTTCTATCTTCTATGTACCTAACAGTATGAGGCTTCAAGTAAGTAAAATAAACTCAACAAGCTTCTCTTCCTTCTCTCAT TTTCTGTTACATTCTATTTAATTGTCTGATATTTATCGAGTCATTTGATCCCAAAAATGTTGCTAGCCCATGATTAACTT CGGTTTCCAATTTGCTTATCCCTATAAAAATTAAATTTTATTTTTATTTGCTTCATAAATTTTTACGTAATTTCAGGTAC TTCTCATATGAGCATTTTTATGTCATTTACTGCAAATTTTGGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGA GAACCTTATTAAATATGGGAACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTCTGTTGATATTCAT TTTTGTGAATGTACTGAGTTAATTTTTTTTTAATCTTTTTTATCTAAGTTGTGTCACTTGTGTGTTTTTACATATCCACC TCAAACTTTGTTGGATTTGATTTGCTTTTAGTTTAAATTATTTAATTGGATACTTTTACCCTTATTAGTTTATCATAGGG TTAACAATGTAAATTACTGAACAAGTTCCATTCATTTTTAAGGTGCTCAAATTTTGAATTTGGTTTGCAAATCAGTTCAT ATTCTTTTGTTTGATAATGAGTTCTGAATATTGGAATTGATTCCTTGATTAATAAAATCAGTTCTATATTTTAATTTTTT TTTTACTTGTATATGCTTAAACTGTGCCAGGTCTCAAGGAAATTCACCAGTAAAGTTGAAGGGAAGATGAATTATGAGGA TTTTGTTCATTTCATACTTGCAGAGGAAGATAAATCATCTCAACCCAGTCTGGAATACTGGTATACTACCAGACCTTCTC AAATACTGGGGATCCTTTTAGGAGCATGGAAAACCATGTCTTTACTTACATATAGCAACTTCGATTTATGCTGAAATTTT TCTAATAATAATATGGAAAATGTTGGTGTCAGACTCGTTGGGTCTAAAGATAAAAGTTCCCTATCATGTATTTTATAACT GTTGAGATCCCACATCTTCTAGGTATATGACCAAAGTAGAGCTTATACATGCTTGGGAAATCCTCACCTCATGAGCTAGT TTTTTGGTTTGAGTTATTTTCCAGTGCAATCTACTTCTTGGCCATGTGGCTTTTACAGTGCAATAAAAAATTGTTCTATA ATAGCCACGCTCCAGATGTCCAATTTTGAATGTGGCGGGGGGTGGTGAGACTTTAGATCCCTCGCCAACTAGAGATTTGA CCAAAGTAGAGCTTGTAACGGTTTGTGCAATAATCACCGGATGAGCTAGTTTTTTGGGGAGTTAGGCTTATCACAAATTT AAGAGTGACATTTTTAGTACAAACATCGTTTTACACAACATAGGTACTTCATTAGTGGTTCTTTCCCTGAGCTCTTTTGT TACATTGGATCCATATTTTTTATGCTCTTTTATATTGTTATTGTTCGGTTATTAATTTTATTAAATCAGGACTCTTTTTA ACAAGCCGTCTTATGCAAGAGTCCATTGCAAGCGTGGACAATGTACATGCTCAACTGTCATGTGCTGAAATTTAACCATT TCTTTATTTGAATAATGGTGCAATGAGGATCAAACTCTAGGCGACTTGGTCATAAGGTTTTGATACCTTTGTCATGAACT AACTATCCCAAAAGCTGAAGCTGTTGGGCACATGAATGAATTGTATTTATATTTCTAACAGTAAGCATTTACATTGAAAC AAACAACTCGAGTCATTAGTGATATTTGGGACATTCTAATGTATTGACTCTTTCTTATGCCATGTTGAATTAATATTAAT TTCTCCTTGGTGAATAATGATAGTTTTGTATACTTGATGCTCTCTTTTCATCTATTCCTTACTGTTCATAGTTTCATACA TGGAAAGCTGATGTTTTCTTAGCTTTAACCTAATACTATATCTGTTTATCTATATATTTTTATATTTATCTAGTTATAAT AATACACCAAAGTTTGGCTTTCGTGTGAATAAACAGCAAACCACCATAATATCTAACAACTTCAACATTCATGGCAATGG CATCCTTTAATTTAATCATCCCCTCACTTGCATGGGCTAAATGTTTTAGATTAGTTGGAGCTTCCTGCTTAGTTTTTGGA ATTCACTGTTGTTCTTGTCTGTAGATTCATTGTCTGGGACACATAATTCGAATTTCATTTGCTGCAATTTCTTTTCCAAA TTCCTCAGCTTTGAAATAGAAACTCAAGATTTTTTTATTTTTTTATTCGTGTAGGTTCAAATGCATTGATTTGGATGGAA ATGGAATACTGACATCAAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAAGAGCCA GTGCTTTTTGAAGATATATTATGTCAAATAGTTGATATGATCGGACCAGAGGTCTCTCCTTTGTTCTTGTTCTTACATCT TTGGTTCTTTTTTATTTTTCTTTTCTTGGTTCAGTTTCATTCCTCTGCAGCATAGTAACTGTCCTATGTGTGCAGAATGA TGGATATATCACATTACGAGATGTAAAAGGCAGCAAACTTTCTGGAAATGTCTTCAACATTCTTTTCAATCTCAACAAGT TTATTTCTTTTGAGACTCGGGATCCGTTTCTCATACGTCAGGTAGACGCAAGTTTTAGACCCTACTTCACTATCAGTGAA GGCTCTTAGCAAATATTTGTTGATAAATTCTGATTCCGATGGCATGTTGTCTAGGAACGCGAGGATCCAAATATGACAGA GTGGGATCGTTTTGCGCATAGAGAGTATATTAGGCTTTCTATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAG ATGTCTGGGAAGAATCACTTGAGGCCCCATTCTGA
CDS sequence (LotjaGi5g1v0190100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCACATCGATCATACCTTGTACAGGATGATTT CAAACCTATATTGAGGGAACTATTGTCCACTCATCCTGGATTGGAGTTTTTGCAAAACACGCCTGAATTTCAGGAAAGAT ATGCTGAGACTGTCATCCATAGAATATTTTACTACATGAACAGATCAGGAAATGGCCGACTTACCCTGAGGGAGTTGAAA CGTGGGAACCTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATATTAACAAAGTTCTGAGGTACTTCTCATATGA GCATTTTTATGTCATTTACTGCAAATTTTGGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGAGAACCTTATTA AATATGGGAACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTCTCAAGGAAATTCACCAGTAAAGTT GAAGGGAAGATGAATTATGAGGATTTTGTTCATTTCATACTTGCAGAGGAAGATAAATCATCTCAACCCAGTCTGGAATA CTGGTTCAAATGCATTGATTTGGATGGAAATGGAATACTGACATCAAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGC ATCGGATGGAGTGCATGGCCCAAGAGCCAGTGCTTTTTGAAGATATATTATGTCAAATAGTTGATATGATCGGACCAGAG AATGATGGATATATCACATTACGAGATGTAAAAGGCAGCAAACTTTCTGGAAATGTCTTCAACATTCTTTTCAATCTCAA CAAGTTTATTTCTTTTGAGACTCGGGATCCGTTTCTCATACGTCAGGAACGCGAGGATCCAAATATGACAGAGTGGGATC GTTTTGCGCATAGAGAGTATATTAGGCTTTCTATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCTGG GAAGAATCACTTGAGGCCCCATTCTGA
Protein sequence (LotjaGi5g1v0190100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAMDLPTQIYTILKQPHRSYLVQDDFKPILRELLSTHPGLEFLQNTPEFQERYAETVIHRIFYYMNRSGNGRLTLRELK RGNLIEAMLHVDEEEDINKVLRYFSYEHFYVIYCKFWELDADHDFLIDRENLIKYGNHSLTYRIVDRIFSQVSRKFTSKV EGKMNYEDFVHFILAEEDKSSQPSLEYWFKCIDLDGNGILTSNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMIGPE NDGYITLRDVKGSKLSGNVFNILFNLNKFISFETRDPFLIRQEREDPNMTEWDRFAHREYIRLSMEEDGEDMSNASGDVW EESLEAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 1.2E-229 | – | |
| PANTHER | 1 | 328 | 328 | 1.2E-229 | – | |
| Gene3D | 2 | 107 | 106 | 2.6E-41 | – | |
| Pfam | 8 | 94 | 87 | 9.4E-36 | ||
| SUPERFAMILY | 9 | 82 | 74 | 5.02E-8 | ||
| ProSiteProfiles | 54 | 89 | 36 | 5.671 | ||
| SUPERFAMILY | 93 | 249 | 157 | 1.14E-25 | ||
| Gene3D | 108 | 275 | 168 | 1.2E-64 | – | |
| Pfam | 109 | 209 | 101 | 7.1E-16 | ||
| ProSiteProfiles | 180 | 215 | 36 | 9.548 | ||
| ProSitePatterns | 193 | 205 | 13 | - | ||
| MobiDBLite | 308 | 328 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0190100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…