Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0190100 |
| Transcript ID | LotjaGi5g1v0190100.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT5G28850.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5QIT3|2AB2B_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta; TrEMBL-Plants: tr|A0A151R6C4|A0A151R6C4_CAJCA Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; Found in the gene: LotjaGi5g1v0190100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48244552..48250466) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATCTGTTTAATTTTTTTATTGTTGCTATATTAACGCAGGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCC ATTTAGTGCTCTTGAGAACTTAACAAATACAAACGCTCTTTCAAGCAACCCATTACCGAACTTATTTCCTGCTGGGAGTA CACCACCACTTTCCCCACGCAGTTCATCTGGTTCGCCACGTACCATGAAACAGAGAACTAGTCCTTCTTCATTAGGTTCT CCACTAAAATTAGTCCGTGAACCTGCAAGGGAAATCATTCCTCAGGTATTTGTTATTGTCTAATGTCTTATTCTTTGTAC TGTTTTCTCTAAACTTTTTTTTGGCATGTCTAGAAAGGAGTCATTCTTTGTTTTACAGTAATTAGCATTACTTTGATGTG CTTGCAGTTCTACTTCAAAAATGGTCCTCCTCCTCCAAGTGAACTAAAAGAGCATTTCCTGTTTCAAATTGAGAGTCGAT TCTATGGTCATTTGGATGGTCTGAAACTACATGGTGAGAACATGATATCTGTGGGTTTAAAAGTTCTATGTTCTCAATTA TGTCATGCTCGTCTGGAGAAATATTAGTTGTTATTAATTAGTATTTGTATTCTATTTTGCAGAATTTAAGGCTGTTACAA AAGAGATCTGTAAACTTCCCTCATTTTTCTCCACTGCTCTTTTCAAAAAGATTGATATTAGTTTTACTGGAACCATAACT AGGTACCAACTTTCTTATTGGATAATTCTATACAGACAGATTGTTGCATCAGATGAAGCATTCTGAATTTTTCTTTGATT TACCTCTTAATTTTGTATATAATATTATGTCTTCTACATTTTATATGTAAAATATTAGAAAAATTGAGCTGCCAGATGTT TGCAGCTGCAATGATCTTGAGCTTTTGAAAAGTGATTAGTTTCTGGATGAATGGGTTATGCTACTTGGTGGTTGGGAGTT GGGACTGTTATGAATTTTAGTTTCATACTACTTTTTTCATTTTCCTCAAAAGAAAGAATTTTTTTTAACCTTAGATCAAG CCAGTTAGGTGGGTTGACTAGAAGGAAGAGGGTCTGGTTGTCAGGAGTAGAGGGAAACATAGTAAAACTATAGTCCTAAT TATTGTGTAGCCGTAGAGGTAAATAATCTATTTGTAAACTTAAGATATGCCATAACATAATTGCGTAGCCGTAGACTAAT TCATGTAGCCAATCCCATGTAGTGAGAAAAGGCTTGGTTGTTGTTGTTTTCATTTTTCTTTCTTACATTCTTTTTAGATG AACTGCTGTTGTTATTTTCAACATTGGTAGAGCAAATATCATCCCCACTTTTCCTCTGTGATTTTTATCATGATTCCTAT TCTGTCTTTTATCTTAGTGGACCATGTCTGGCTTTCGTAGAGAAAGGGAAGGGTAGCAGATTAGATATCATGATTTAATA AGAAGCTGTTTGGGCACCACATTTGATCTTGGTGAAAATCCCTGTTGTGTTGAATTAATGCCTCTACATTTTAACCTATA TTGTAGGGATCAATTTATTGACTATTGGATTCGGGGAAACATGTTAGCTATGGATTTACCCACACAAATATATACCATAC TGAAGCAACCACATCGATCATACCTTGTACAGGTTTGCCTGCCATACCCTTACTCCTAAGTATTTTGTTATTTGTTATCT CTCAACTTGAACTACGAAGGGCTTAATGAAATGTTATATATTAGGATGCATTTATGTTTTCTATGTTGGGTGTAGGATGA TTTCAAACCTATATTGAGGGAACTATTGTCCACTCATCCTGGATTGGAGTTTTTGCAAAACACGCCTGAATTTCAGGAAA GATATGGTATGATCATATTCTTTGGATTGACAACTTTTTTGTTTTTTTTTCAAGTCTGAATTTTATTTCTAGTGCTTCTT TTAAAAACAACTTAGTTTACCCACCACATCCATTACATGTGTACTTTTTCCCTATGTATTACTTGTGTAGGGGGATAAAC TTTTTTGTATTACGTTATAATCTAATTATAATTGGGGATTTGGGGATTTAATTGCAGTCATAGAATTGCCATATATGTCT TTGGAATTTGACTTACTAGAATTTGAAAATAAGAACTTCAACGTTTAAACCTATTTTCTTGTTTACCATTCTTTTTCTAC ATACACATATATTTTATGTTATTGAAAATGTTCTCAGGCTATTCCTTACTGCTGCATGTTTTGTCCTAAAACAGCTGAGA CTGTCATCCATAGAATATTTTACTACATGAACAGATCAGGAAATGGCCGACTTACCCTGAGGGAGTTGAAACGTGGGAAC CTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATATTAACAAAGTTCTGAGGTAAAGGCTTTTAGCTGAAAATAT GTGAAAAATCAACTAGACTTTTGATTGAAAGCATGCCGTTGCTGTCTTTGGAATATCCTTCTACTATTTGTTGGCACAAA CTCCTGCAAAATAATGCCTTTGCCAAGAGAAGTCGATGATCTTGATCCTTGCCATTCTTGGATCGTTTTTTTCTCTCTCT ATTGAACCAAACAAGAGGAAAGTTGATTTTTTGTCTCATTTTCTGTACTTCTATTTTCTGTTTATCAGAATACATATAAA TCTAACTGACTGTAGCCTAACAGAAATCTAACTAACTGAACTGACTTGACAGCTCGTACTCTATCTGAATAATAGAACTC TAGGTACTATCTCCATTCTATACCATATCAATATTTGATGCTAAGAGATAACCACAAATACACGAGCAACTTCCTTTGTG CTTGGTCTTGTGTTCAAACTTGAGTCATATTGGTGTATATAGTCTTCTCTGTAGTCTGGACAATACATGAAGTTTCTGCC ATCTAGCAGTTTTGCTGCCAGAAGTCAGTATCTGCTTGTGTCAGCTGAGTCAGTCAGTATCTGTTGGTTATTCTGTTAGA ATATTTTATTCGTTGGTTAATGGATATTGTTTGTGAACCAGTTCTATCTTCTATGTACCTAACAGTATGAGGCTTCAAGT AAGTAAAATAAACTCAACAAGCTTCTCTTCCTTCTCTCATTTTCTGTTACATTCTATTTAATTGTCTGATATTTATCGAG TCATTTGATCCCAAAAATGTTGCTAGCCCATGATTAACTTCGGTTTCCAATTTGCTTATCCCTATAAAAATTAAATTTTA TTTTTATTTGCTTCATAAATTTTTACGTAATTTCAGGTACTTCTCATATGAGCATTTTTATGTCATTTACTGCAAATTTT GGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACATATCGG ATTGTTGATAGAATTTTTTCCCAGGTCTGTTGATATTCATTTTTGTGAATGTACTGAGTTAATTTTTTTTTAATCTTTTT TATCTAAGTTGTGTCACTTGTGTGTTTTTACATATCCACCTCAAACTTTGTTGGATTTGATTTGCTTTTAGTTTAAATTA TTTAATTGGATACTTTTACCCTTATTAGTTTATCATAGGGTTAACAATGTAAATTACTGAACAAGTTCCATTCATTTTTA AGGTGCTCAAATTTTGAATTTGGTTTGCAAATCAGTTCATATTCTTTTGTTTGATAATGAGTTCTGAATATTGGAATTGA TTCCTTGATTAATAAAATCAGTTCTATATTTTAATTTTTTTTTTACTTGTATATGCTTAAACTGTGCCAGGTCTCAAGGA AATTCACCAGTAAAGTTGAAGGGAAGATGAATTATGAGGATTTTGTTCATTTCATACTTGCAGAGGAAGATAAATCATCT CAACCCAGTCTGGAATACTGGTATACTACCAGACCTTCTCAAATACTGGGGATCCTTTTAGGAGCATGGAAAACCATGTC TTTACTTACATATAGCAACTTCGATTTATGCTGAAATTTTTCTAATAATAATATGGAAAATGTTGGTGTCAGACTCGTTG GGTCTAAAGATAAAAGTTCCCTATCATGTATTTTATAACTGTTGAGATCCCACATCTTCTAGGTATATGACCAAAGTAGA GCTTATACATGCTTGGGAAATCCTCACCTCATGAGCTAGTTTTTTGGTTTGAGTTATTTTCCAGTGCAATCTACTTCTTG GCCATGTGGCTTTTACAGTGCAATAAAAAATTGTTCTATAATAGCCACGCTCCAGATGTCCAATTTTGAATGTGGCGGGG GGTGGTGAGACTTTAGATCCCTCGCCAACTAGAGATTTGACCAAAGTAGAGCTTGTAACGGTTTGTGCAATAATCACCGG ATGAGCTAGTTTTTTGGGGAGTTAGGCTTATCACAAATTTAAGAGTGACATTTTTAGTACAAACATCGTTTTACACAACA TAGGTACTTCATTAGTGGTTCTTTCCCTGAGCTCTTTTGTTACATTGGATCCATATTTTTTATGCTCTTTTATATTGTTA TTGTTCGGTTATTAATTTTATTAAATCAGGACTCTTTTTAACAAGCCGTCTTATGCAAGAGTCCATTGCAAGCGTGGACA ATGTACATGCTCAACTGTCATGTGCTGAAATTTAACCATTTCTTTATTTGAATAATGGTGCAATGAGGATCAAACTCTAG GCGACTTGGTCATAAGGTTTTGATACCTTTGTCATGAACTAACTATCCCAAAAGCTGAAGCTGTTGGGCACATGAATGAA TTGTATTTATATTTCTAACAGTAAGCATTTACATTGAAACAAACAACTCGAGTCATTAGTGATATTTGGGACATTCTAAT GTATTGACTCTTTCTTATGCCATGTTGAATTAATATTAATTTCTCCTTGGTGAATAATGATAGTTTTGTATACTTGATGC TCTCTTTTCATCTATTCCTTACTGTTCATAGTTTCATACATGGAAAGCTGATGTTTTCTTAGCTTTAACCTAATACTATA TCTGTTTATCTATATATTTTTATATTTATCTAGTTATAATAATACACCAAAGTTTGGCTTTCGTGTGAATAAACAGCAAA CCACCATAATATCTAACAACTTCAACATTCATGGCAATGGCATCCTTTAATTTAATCATCCCCTCACTTGCATGGGCTAA ATGTTTTAGATTAGTTGGAGCTTCCTGCTTAGTTTTTGGAATTCACTGTTGTTCTTGTCTGTAGATTCATTGTCTGGGAC ACATAATTCGAATTTCATTTGCTGCAATTTCTTTTCCAAATTCCTCAGCTTTGAAATAGAAACTCAAGATTTTTTTATTT TTTTATTCGTGTAGGTTCAAATGCATTGATTTGGATGGAAATGGAATACTGACATCAAATGAAATGCAGTTCTTTTATGA GGAGCAGTTGCATCGGATGGAGTGCATGGCCCAAGAGCCAGTGCTTTTTGAAGATATATTATGTCAAATAGTTGATATGA TCGGACCAGAGGTCTCTCCTTTGTTCTTGTTCTTACATCTTTGGTTCTTTTTTATTTTTCTTTTCTTGGTTCAGTTTCAT TCCTCTGCAGCATAGTAACTGTCCTATGTGTGCAGAATGATGGATATATCACATTACGAGATGTAAAAGGCAGCAAACTT TCTGGAAATGTCTTCAACATTCTTTTCAATCTCAACAAGTTTATTTCTTTTGAGACTCGGGATCCGTTTCTCATACGTCA GGTAGACGCAAGTTTTAGACCCTACTTCACTATCAGTGAAGGCTCTTAGCAAATATTTGTTGATAAATTCTGATTCCGAT GGCATGTTGTCTAGGAACGCGAGGATCCAAATATGACAGAGTGGGATCGTTTTGCGCATAGAGAGTATATTAGGCTTTCT ATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCATTCTGA
CDS sequence (LotjaGi5g1v0190100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACAGAGAACTAGTCCTTCTTCATTAGGTTCTCCACTAAAATTAGTCCGTGAACCTGCAAGGGAAATCATTCCTCA GTTCTACTTCAAAAATGGTCCTCCTCCTCCAAGTGAACTAAAAGAGCATTTCCTGTTTCAAATTGAGAGTCGATTCTATG GTCATTTGGATGGTCTGAAACTACATGAATTTAAGGCTGTTACAAAAGAGATCTGTAAACTTCCCTCATTTTTCTCCACT GCTCTTTTCAAAAAGATTGATATTAGTTTTACTGGAACCATAACTAGGGATCAATTTATTGACTATTGGATTCGGGGAAA CATGTTAGCTATGGATTTACCCACACAAATATATACCATACTGAAGCAACCACATCGATCATACCTTGTACAGGATGATT TCAAACCTATATTGAGGGAACTATTGTCCACTCATCCTGGATTGGAGTTTTTGCAAAACACGCCTGAATTTCAGGAAAGA TATGCTGAGACTGTCATCCATAGAATATTTTACTACATGAACAGATCAGGAAATGGCCGACTTACCCTGAGGGAGTTGAA ACGTGGGAACCTAATTGAAGCCATGCTGCATGTAGATGAGGAAGAGGATATTAACAAAGTTCTGAGGTACTTCTCATATG AGCATTTTTATGTCATTTACTGCAAATTTTGGGAGCTCGATGCAGATCATGACTTTTTGATTGATAGAGAGAACCTTATT AAATATGGGAACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTCTCAAGGAAATTCACCAGTAAAGT TGAAGGGAAGATGAATTATGAGGATTTTGTTCATTTCATACTTGCAGAGGAAGATAAATCATCTCAACCCAGTCTGGAAT ACTGGTTCAAATGCATTGATTTGGATGGAAATGGAATACTGACATCAAATGAAATGCAGTTCTTTTATGAGGAGCAGTTG CATCGGATGGAGTGCATGGCCCAAGAGCCAGTGCTTTTTGAAGATATATTATGTCAAATAGTTGATATGATCGGACCAGA GAATGATGGATATATCACATTACGAGATGTAAAAGGCAGCAAACTTTCTGGAAATGTCTTCAACATTCTTTTCAATCTCA ACAAGTTTATTTCTTTTGAGACTCGGGATCCGTTTCTCATACGTCAGGAACGCGAGGATCCAAATATGACAGAGTGGGAT CGTTTTGCGCATAGAGAGTATATTAGGCTTTCTATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCTG GGAAGAATCACTTGAGGCCCCATTCTGA
Protein sequence (LotjaGi5g1v0190100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQRTSPSSLGSPLKLVREPAREIIPQFYFKNGPPPPSELKEHFLFQIESRFYGHLDGLKLHEFKAVTKEICKLPSFFST ALFKKIDISFTGTITRDQFIDYWIRGNMLAMDLPTQIYTILKQPHRSYLVQDDFKPILRELLSTHPGLEFLQNTPEFQER YAETVIHRIFYYMNRSGNGRLTLRELKRGNLIEAMLHVDEEEDINKVLRYFSYEHFYVIYCKFWELDADHDFLIDRENLI KYGNHSLTYRIVDRIFSQVSRKFTSKVEGKMNYEDFVHFILAEEDKSSQPSLEYWFKCIDLDGNGILTSNEMQFFYEEQL HRMECMAQEPVLFEDILCQIVDMIGPENDGYITLRDVKGSKLSGNVFNILFNLNKFISFETRDPFLIRQEREDPNMTEWD RFAHREYIRLSMEEDGEDMSNASGDVWEESLEAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 435 | 435 | 2.6E-300 | – | |
| PANTHER | 1 | 435 | 435 | 2.6E-300 | – | |
| Gene3D | 21 | 121 | 101 | 6.0E-9 | – | |
| SUPERFAMILY | 58 | 189 | 132 | 1.55E-14 | ||
| ProSiteProfiles | 81 | 109 | 29 | 5.615 | ||
| Pfam | 115 | 201 | 87 | 1.5E-35 | ||
| Gene3D | 123 | 210 | 88 | 9.7E-35 | – | |
| ProSiteProfiles | 161 | 196 | 36 | 5.671 | ||
| SUPERFAMILY | 200 | 356 | 157 | 2.24E-25 | ||
| Gene3D | 211 | 382 | 172 | 2.3E-64 | – | |
| Pfam | 216 | 316 | 101 | 1.1E-15 | ||
| ProSiteProfiles | 287 | 322 | 36 | 9.548 | ||
| ProSitePatterns | 300 | 312 | 13 | - | ||
| MobiDBLite | 415 | 435 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0190100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…