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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0190500 |
| Transcript ID | LotjaGi5g1v0190500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|O82268|LSH3_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; TrEMBL-Plants: tr|I1LC58|I1LC58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0190500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48314040..48316136) extracted from Lotus japonicus Gifu genome v1.2.
GATGAGATGAAAATGATCAGTTGCATGTGAAGGTCTATACTATAAGTGATTATCAATGATCAATGAATGAAGACTAAAAA ATGACCACCCTATCTCTCTCTGTCTGAACTGTTGTTTTACCCTTATTCCTGTTACGCTATCCCTACCACACCCTCCACCA ATCTTTAACACACACACTCTCTCTCTCTCTCTTGAAGTTGAATCCCTACCGAAATCTGATCAAAGCCATTTTTCTTTGCT TCTGATCTCTAGATCTTCTTTCTCCTTATATCATATCACCACCTGTACAATCTCTCTCTGTCCACAACTGTTCAAAACCC TCATCCTCTCTTCAAAACAGAAAAAACCTTGCTACAAACAGTCACAACAAAGCAAAGATCAAAGAGTCAATCCAACCAGT ACTCCCTTTAGATCTCATCACAAAAACAAACAGTACTAGTCATCACTCATCATGAATTCCCTTCAAGACTTTGACTCTAC AGTACTCAACAACACCATCAACTTCAGCACCACACTCACACCAGGCACCTCAAGCACCTCCAATTTCACCTCATCATCAG CCTCATCACCACCACAACAACCACCACCATCATCCTCCACCGCCACTCTCAGCCGCTACGAGAACCAAAAACGCCGAGAC TGGAACACGTTCGGCCAGTACCTCCGCAATCACCGTCCTCCACTCACCCTCTCTCGCTGCAGCGGCGCTCACGTCCTTGA ATTCCTCCGCTACCTCGACCAGTTCGGGAAAACTAAGGTTCACACGCAGCTCTGTCCCTTCTTTGGCCACCCGAACCCAC CTGCACCGTGCCCTTGCCCTCTCCGGCAAGCTTGGGGGAGCCTCGACGCGCTTATCGGAAGACTCAGAGCTGCTTTTGAA GAGAATGGTGGGAAACCGGAGGCTAACCCTTTTGGTGCTCGTGCAGTGAGGCTCTACCTGCGTGAAGTGCGTGATTCGCA GGCGAAAGCGCGAGGGATTAGCTACGAGAAGAAGAAGCGCAAGCGTCCACAACCGCAATTGCAGCCGCAACAACAACCTC CTGCATTGCCACCATCAAATGCAAGTTAGTAAGTAGTAGTTGCCAAACATATCATAACATGTTTGGATCCGTTTATCTTT TATCAGAAATTAATTCTGAAACCTAAAAGCTAAGCGCACAGCCATTTAGGCTGTTTCCTAGAATTGATTTTGACTTCAGA GTTAATTGTTAATTGTTATGTAATCTTCTATTTTGAAGTTCACATGCGATGATGAGTAGTTTAATTATTTTACCTTAATG TAGCACTAGATATTTCCAAATTATATGTGTTTTTTTGTTGCATTTTTTGGCCTTTTTCTTGCATTTTACTTGTATGTATA TTTGGTGGTGCAGAACTTGTGATTTGACACTGGGTCACTGCAATAGGGGGGACACATCTTTAGTTTGGAATTTGATTAGA AAATGCGTAACCTAAACAGCACTACTCTTGGTAGAAGAAGCAGTAAACGAGTAATTTGAGTAAGTAAGCACTAGTAGTAG CAGTGAAAAGACTGTTAACAAGTCAGAGAGGGCTGTGAGAAAGACCAATATATGTCGCCCAATTTGTAATGAATTAGAAA TGTCAATACTAGCTTAGTCAAGACATACAAATAGGATATATAGCACTTATTAGCAGACATCTCATTTTGTTTTTTATCTC TTTTTTATCATATATATTTACTTGTCTTTTTAATCTTCTAATTTTATATGTTTGTTGGGTGTCTCAGGTACGATTATCTA TAAATTATTTTCTCGAAATATATATATGTATGTATGTACTTGAAAATGTCATGGAAAAAATAATGGATTTTGAAGCATGT TTCCAACATAAGTTTTATGAATAGTTAGACATGGTATTGGATTTTTTATGGTTAAGGTGATCTAAAGTTTTATTTAATTA TGAAAAGTACTCTTAGATGATGTGGCGTATCATATAAAATCACTATGTTATTCATTACACTTTTGTCTAATAAGTTTTTA TTTATGATCAATTCATCCTGCTACTAGTATCATTGACATGTCTAGCATTATTCATATTTGCATTTGAGTTTCACATTCAC TTTTGCAGCATTCATCA
CDS sequence (LotjaGi5g1v0190500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCCCTTCAAGACTTTGACTCTACAGTACTCAACAACACCATCAACTTCAGCACCACACTCACACCAGGCACCTC AAGCACCTCCAATTTCACCTCATCATCAGCCTCATCACCACCACAACAACCACCACCATCATCCTCCACCGCCACTCTCA GCCGCTACGAGAACCAAAAACGCCGAGACTGGAACACGTTCGGCCAGTACCTCCGCAATCACCGTCCTCCACTCACCCTC TCTCGCTGCAGCGGCGCTCACGTCCTTGAATTCCTCCGCTACCTCGACCAGTTCGGGAAAACTAAGGTTCACACGCAGCT CTGTCCCTTCTTTGGCCACCCGAACCCACCTGCACCGTGCCCTTGCCCTCTCCGGCAAGCTTGGGGGAGCCTCGACGCGC TTATCGGAAGACTCAGAGCTGCTTTTGAAGAGAATGGTGGGAAACCGGAGGCTAACCCTTTTGGTGCTCGTGCAGTGAGG CTCTACCTGCGTGAAGTGCGTGATTCGCAGGCGAAAGCGCGAGGGATTAGCTACGAGAAGAAGAAGCGCAAGCGTCCACA ACCGCAATTGCAGCCGCAACAACAACCTCCTGCATTGCCACCATCAAATGCAAGTTAG
Protein sequence (LotjaGi5g1v0190500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSLQDFDSTVLNNTINFSTTLTPGTSSTSNFTSSSASSPPQQPPPSSSTATLSRYENQKRRDWNTFGQYLRNHRPPLTL SRCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVR LYLREVRDSQAKARGISYEKKKRKRPQPQLQPQQQPPALPPSNAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 202 | 189 | 4.6E-105 | – | |
| PANTHER | 14 | 202 | 189 | 4.6E-105 | ||
| MobiDBLite | 18 | 38 | 21 | - | – | |
| MobiDBLite | 18 | 58 | 41 | - | – | |
| Pfam | 49 | 168 | 120 | 5.9E-66 | ||
| ProSiteProfiles | 55 | 182 | 128 | 86.925 | ||
| MobiDBLite | 169 | 205 | 37 | - | – | |
| MobiDBLite | 169 | 186 | 18 | - | – | |
| MobiDBLite | 190 | 205 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0190500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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