Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0193500.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0193500
Transcript ID	LotjaGi5g1v0193500.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF506 family protein; TAIR: AT3G22970.1 hypothetical protein (DUF506); Swiss-Prot: sp\|P40320\|METK_DROME S-adenosylmethionine synthase; TrEMBL-Plants: tr\|A0A0L9TYH0\|A0A0L9TYH0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0193500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:48766108..48769131) extracted from Lotus japonicus Gifu genome v1.2.

GTAATAATAATGCACAACAATAGCCACGAACAATCACTCTGCAGAGTGGGTAGTTTTCGATAAACCCACAACACGACGGG CATCTACCCGAAATTCCACGCACTCCCAAGGGCACCATAGTCAATTCACCCTTCACAATAACCCAATGCGTACCGCGCAC GATAATCTTCCTCCACACGCGTCACCAACTTGAACGCTCCTTGATTTTTCTTCACTACCCAAATTACCCTCGCCACGTCA TATCCTACGTGGACCCTTCAGTCCATGTCAGCATCCCTTCTTCTTTGCTATAAATACCCATCCTCTCATTACCCTCACAC CTAATCCAAAACGCTTAGACACCAAAAACGAAAGTTCAAACAAAAAAAAAATAGAAACCTCTTCTTCCTCCGCCCGCCGT GAACCACCGCCGGCGACAGTTAACCCGCCGGTGAGATGAACATTCCGGCGAACCTCTCTTCCCTGTCTATCAACAATGCT CGTTTAGCCGATCATCGCCGCCACGTTTTCCACGAGAAACTTCACTTGAAAACTCTAACACGCTTAGTCTAGAAGTGATT CCATTCCATCATTCCATGCTTCTTCTGTGAAAATGGCACAAAGATGATTCAGTAGTGGTTGTTACAAAGGGAAAACGATT TTTGAGCTTTTTTTTTGCATTTTTGGTTTTTGTTTTGCCTTCTAAAATGGCTCCGATGAAGATCCAACCCATCGACATCG ATGCACAGAGTCTGAAGGAAGCGACGACGGTGGCGGTGGTGGCTCGAAACGACGTCGTTAAGCCGGTGTTGAAGTCACGA CTGAAGAGGCTGTTCGTGTTTGACCGGCAGAAACCAGTCGCCGGCGATGCTCCGCTGTCCAACACCAGAGATGGAGCCGG CGGAGTTGTACCGGAGTTTGAGCCAAGCTCTGTTGTGTTGGCCAATATGGTGCAGAGTTTCATCGAAGAGAGTTACGAGA AGCAGCAGCAGCCACCGACGGCCGCGAGAAACGCTCGCAACCGCTGCAACTGCTTCAACGGCAACAGCAATGACATCTCC GACGATGAACTCGACATCTTCGGTGAATCAATCGCCTCTGGTTCATTCGGCGACTCCGGCGACGCGCTCAAGGTAACTAA CTATCTAGCTAGTTCACGATTTTGATTTTCTCATCTTCATTTTCTCGCGGTTTCTCAGCATCCAAACACTCTAATTCTCC GTGATTTCGTTTTTGCAGAGCTTGATTCTTTGTGCGAGTGTTGCAGAGAGAAACCTCTTAGCTGACACATCGAAGATCGT TGACCAGAACAGCAAGGTTTACAAGAGAAAAGACGAATTGAGAAAGATCGTGGTTGAAAACCTTTCATCTCTGGGTTACG ATTCCTCCATCTGCAAATCGAAATGGGAGAAAACCCTATCTTACCCTGCCGGTACTAATTTTCTGCAACCTAATTTGATT TACAATTTCAATTCAAAATAATTGAAATCAGTTCTGGAAAATTGAATGTTGTGGTTTTGATTTTGATTCAGGTGAATATG AATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATCGATATAGATTTCAGATCGGAGTTCGAGATTGCTCGATCG ACGGGGACTTACAAGGCGATTCTTCAGTATTTGCCGTTCGTTTTCGTCGGGAAATCGGATCGTCTCTGTCAGATCGTCGC CGTCGTGGCGGAGGCGGCGAAGCAGAGCTTGAAGAAGAAAGGGATGCACGTTCCGCCGTGGAGGAAGGCGGAGTACATGC TTGCCAAGTGGCTCTCCAGCTCCACCTGCACTAGAGCAAGTCCTCCGCCGCCCTCCGCCGTGTGTGGCTCCAGTGAGAAT CTGAGCGGCGGTGGAAGTGCTGAGGCGGAGAGTGATTGCTGTGAGTTGGAACTGATCTTCGGTGAAAAAGCATTGTCGCC GGAGATGAAGGTTGTTTCGGGTGGTGAGAAGGGCTTGCTGACGGTTGCGACGCCGGCGTGGCATCCACCGGCGGTGAGAG TGAAGAGTGTTGAGAGAGGAGCGAGGGTGGTTACTGGATTAGCTTCTCTTCTCAAAGATAAACCATAGAAGAAAATTTTG CACTTTTTTTGTTTTTTCTTTAAATCGGTAATTGAAAAACATGACCAAAATATTTTGGATAAGAGCAAGGTTCTCTTTTT TTTTTAACCAATTTTCACTTTTTTGCCTCTTGTTTTTTGGCTTTTCTTTTGCAGAGGGTCTATGTAAGAAGCAACTTTAT ATGTGACCAATCAATGTAATAAAATAGCAGAAGAAAAAGAAAAGAGTACATATTTTTGCATAAATCTAAGAGTGAAACAC TTCACAATGTTTATTTGAAGTTTGAATAGGAATAATGAGATCAAAACTGCAAAACACCTGAGATTCGCTGCATTCCAACA TCAACTATAGTTTTTTTTTTTAAATTGAAAAGAAGAGTTGATATATGACTTGCTCCTTATACACATAAACTACAGTTTAA GATTCCTTGTGACATTATTATATATTTGAAAACCCTTTATATAAATCATTTTTTTCTTGGATATTAATGTAAGTTTTGTG TATTACTACAACAAGATAGATATATTTGTTTCTTGAAAAGTGATGTATTTTATGCTGAGTTGTTGATTTCTTGGTAATGG AAAGTGGATTGAGAAGTTTAAAGTTAGAACTTGCATCTTGCTTTCCCCAGGGCCGGCCCAAGGGTAAAGCCACCCAAGCA AGGGCTTTAGGCCTCCAATTTTTTTTTGTTTTTTCTTAAGTAAAAAAGGCCTCCGATTTTTTTTCTTAAGTAAAAAAGGC CTCCAAAATTAAAATTAACAAAATTTTATATTAGATCAAACATGTTTCAAGGCTCTCAAAATTAAAATTCGCTTTAGGCC TCATTTGGTGTTGGGCCGGCTCTGGCTTTCCCTTCAAAGTGAGACAGATGGGGATGAAGTTATTTCTTTTTTGGACCGGT ACCCTTTTCAAAAATGCAGGGTTTTAAATTCTTCAATTTATTATTAATTAAAAGTATAAAAACT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCGATGAAGATCCAACCCATCGACATCGATGCACAGAGTCTGAAGGAAGCGACGACGGTGGCGGTGGTGGCTCG AAACGACGTCGTTAAGCCGGTGTTGAAGTCACGACTGAAGAGGCTGTTCGTGTTTGACCGGCAGAAACCAGTCGCCGGCG ATGCTCCGCTGTCCAACACCAGAGATGGAGCCGGCGGAGTTGTACCGGAGTTTGAGCCAAGCTCTGTTGTGTTGGCCAAT ATGGTGCAGAGTTTCATCGAAGAGAGTTACGAGAAGCAGCAGCAGCCACCGACGGCCGCGAGAAACGCTCGCAACCGCTG CAACTGCTTCAACGGCAACAGCAATGACATCTCCGACGATGAACTCGACATCTTCGGTGAATCAATCGCCTCTGGTTCAT TCGGCGACTCCGGCGACGCGCTCAAGAGCTTGATTCTTTGTGCGAGTGTTGCAGAGAGAAACCTCTTAGCTGACACATCG AAGATCGTTGACCAGAACAGCAAGGTTTACAAGAGAAAAGACGAATTGAGAAAGATCGTGGTTGAAAACCTTTCATCTCT GGGTTACGATTCCTCCATCTGCAAATCGAAATGGGAGAAAACCCTATCTTACCCTGCCGGTGAATATGAATACATCGATG TGGTTGTGGAAGGTGAGAGGTTGATAATCGATATAGATTTCAGATCGGAGTTCGAGATTGCTCGATCGACGGGGACTTAC AAGGCGATTCTTCAGTATTTGCCGTTCGTTTTCGTCGGGAAATCGGATCGTCTCTGTCAGATCGTCGCCGTCGTGGCGGA GGCGGCGAAGCAGAGCTTGAAGAAGAAAGGGATGCACGTTCCGCCGTGGAGGAAGGCGGAGTACATGCTTGCCAAGTGGC TCTCCAGCTCCACCTGCACTAGAGCAAGTCCTCCGCCGCCCTCCGCCGTGTGTGGCTCCAGTGAGAATCTGAGCGGCGGT GGAAGTGCTGAGGCGGAGAGTGATTGCTGTGAGTTGGAACTGATCTTCGGTGAAAAAGCATTGTCGCCGGAGATGAAGGT TGTTTCGGGTGGTGAGAAGGGCTTGCTGACGGTTGCGACGCCGGCGTGGCATCCACCGGCGGTGAGAGTGAAGAGTGTTG AGAGAGGAGCGAGGGTGGTTACTGGATTAGCTTCTCTTCTCAAAGATAAACCATAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPMKIQPIDIDAQSLKEATTVAVVARNDVVKPVLKSRLKRLFVFDRQKPVAGDAPLSNTRDGAGGVVPEFEPSSVVLAN MVQSFIEESYEKQQQPPTAARNARNRCNCFNGNSNDISDDELDIFGESIASGSFGDSGDALKSLILCASVAERNLLADTS KIVDQNSKVYKRKDELRKIVVENLSSLGYDSSICKSKWEKTLSYPAGEYEYIDVVVEGERLIIDIDFRSEFEIARSTGTY KAILQYLPFVFVGKSDRLCQIVAVVAEAAKQSLKKKGMHVPPWRKAEYMLAKWLSSSTCTRASPPPPSAVCGSSENLSGG GSAEAESDCCELELIFGEKALSPEMKVVSGGEKGLLTVATPAWHPPAVRVKSVERGARVVTGLASLLKDKP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31579:SF19 View details on PTHR31579:SF19 Search for proteins/transripts with this domain View external data on PTHR31579:SF19	25	391	367	2.6E-166	–
PANTHER	PTHR31579 View details on PTHR31579 Search for proteins/transripts with this domain View external data on PTHR31579	25	391	367	2.6E-166	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04720 View details on PF04720 Search for proteins/transripts with this domain View external data on PF04720	80	296	217	8.9E-77	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01615 View details on TIGR01615 Search for proteins/transripts with this domain View external data on TIGR01615	177	298	122	2.3E-50	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0193500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…