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LotjaGi5g1v0194600.1

Overview

Field Value
Gene ID LotjaGi5g1v0194600
Transcript ID LotjaGi5g1v0194600.1
Lotus japonicus genome version Gifu v1.2
Description Pantothenate kinase; TAIR: AT4G35360.1 pantothenate kinase; Swiss-Prot: sp|Q949P3|Y2734_ARATH Uncharacterized protein At2g17340; TrEMBL-Plants: tr|K7N4U8|K7N4U8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0194600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:48944165..48948905) extracted from Lotus japonicus Gifu genome v1.2.

GAAAGCCTTGATTCATGATATAAATTCCACAGGGCTGAATAACAAACAAGTTCATATTACGAGCTTCAATGGGGATAGTG AAACCGATTTTATCACCAGTTCAAACACACAGCAGCCATTGGAACTCTCCATCAATCTCCTCCTTCTCAACCAATAAGTC CTTGTCTTTTCCCCAACTCAAGTGCATTCTTCATCCCCCACAATCCACCGTCCACTCCAAACTAGGTAATAGAATACTAC CCCAGAACACTAAATTTTATTGTCTTATATCTCAATTTAGTTTAGAGTTTAAACCATTTATATTCTTGAGCGAGACAACA ATGTTCGTGTCGGTTAGTATCATTACAAATGATATTACTCTTCATATAAAATATTTACCTTCATCACAGTAATTCGAATT CGAGATTTTTATAAAGCAATATTGTAATGTCATGATTAAATTTTTTTTTTAAATAAATATGAAAATCAGATTAAATTTAA AGTGATAAGTTTACTGATATTTAACTACAGTGTACTAATTGTATAACAGAAACAAAGGACATTATTGTATAACAGATACA ACTTTGTTTAGGAGTGTGAGTAATCATTCATTCATTGTTGTGTTGTCACAGTGATATCAGAAGAAGCAATGCAGAGTAGC ACTTCAAAGCTGGTTCGTTTCCCATTGTTGAAGAATGACAATTACACAGCCAGCACCATTCCATGGAGGTTTCCTTCCGA TGATCCACACATTCCCACTCCGACAGAGTTATCTTGGATTAATCTCCTTCTCAATACCATCCCCTCCTTCAAGTATGTTC TTTTTCTTTCTCAAAACAAAAATGGGGTGTGCTTCAAATTTCATTATTCGTAGCCTATCTTTATCCTTTTTAAAAAAATG GGGTGTGACTCAAATTTCTGTATCCAATTATAACTCATGAAAAGTTCGATTTTTTATTCTTAAAAAAGCTTAAACTTCAG CATTAGTAGACTGACTTAGGGCATCATTTCAATTCCTCTGTATTTCATAAAGTAAATTAAAGAGCACAGCGTAGTTTCTG GTTCTTATATGATTGCAAGGACTATTGTATTAATGTAGCCATTACCTATTATTCGTAGAATTTGGATTAGACCTAACTCT ATCGCAAAAGGTAGATAGTTTGGGGGTGAGGGTTTCTCTACTATTTATAAGGACTATTAGGTCATATCACTGGTTAATGT GACTTCTCTAACACACCCCCTCACGCCGAGAGCTAGACATTTGGAGTGTGAAATTTGAATGAGTGAACATCTGTGCGCGA CCCATATGGGTATTGGGTAGTCTTTAATAAGCAAATCTAGTGTATGTTCTTATACCATATTAGAATTCAGATTAGGCTTA ATTCTACCCCAAAAGCCTAACCTGAAAGAGTTTTAGTGAAATGTTGTTCTTACATTATTGCAAGGAATATTATTTCTACG TTTTTTGCATCAATTTTTAGTTTTTCTTTGATACAGGAAGCGTGCTGAGAGTGATACCTCTGTTCCTGATGCTGCAAATA AAGCAGAAATATTTGCTCAAAGGTGGTCTTTTACTATTTCACTCTTCCTTTTTGTCCCATTTCAGAGGTCTTTTTTGCAT GAGAAACCTATGCTTTTTAGGCTATGTTTGAATACCTCAGCAGTGCAAACAGGACTCTTCTTATGAATTTAAATGAAAGT CTGTTCACTTTGTACTCATTTCGTTTCAAAACACACACTTCTTTAATAATAACATGGCAATACTTCTGAAAATTAGAATG GCATATAGTTTCTTATGGATCTCAGACTTGTATTATTCTTTAGCCTCCTCTTTTTGTATTGAGTTATGTAATCCATATAA TTCAAATTGTTGTTAACTGCAATATTGCATCTTCTGTTGTTGCATTTCCTGTAAACAGGTATGCTAAAATCCTTGAAGAT TTCAAGAAAGATCCTGCAAGTCAAGGCGGGCCTCCTGATGTCCTTGTATGTTCTCACAAGTCACCACAATCCAATTTCCA TCTCCCAAGAACAAAATAATAAAATAAAAAGATAACAAATTAAAACACAAAATGTTTGTTACATGTCTAACTAACTATCC CCTTGTGTTTCCCTCTATTTCTCATTTTGTTTGTTTTTTCTTGGTGCTGGGGGTTGGTTTTAGTTTCTATGCAGACTTCG TGAGCAAGAACTTAGAGAATTGGGATTCATAGACATCTTTAAGAAAGTCAAGGTAAGCTTAACTGTGTACAATCTGGTGT TCAGTCTTCTATGTGTTAAATGCTAATACTATTAAGCTAAAATATTGAAGAAAAGCATGTCAATATCTGATTATAGGGGT TGAAGTAATGTAATATGCATGGAGACTATAGAGAAATTTAACTACATTCTTTTTATAATTCTGTTGGCCAGAGTTCTACT TTTATTAGCCAAAGTTGAAGAAATTTAGCTCTACTACTTTTCAATTCCAATAAGGGATGGAGTGGTATCATGATTATCAT TGAACCATGCAGTTTTATTTTGTCTAAGATTTGTAATTCCTCTATGATTGAATACAACAGGAGGAAGAGAATGCAAAGGC CATTGCCCTATTTGAGAGTGTTGTTCGCCTTAATGATGCCATTGAAGATGAAGGAAAGCGGGTTGAAAATCTAATGAGAG GGATTTTGGCAGGGAACATATTTGATCTTGGTTCTGCCCATGTAGGTTGATTTTCTATATGTAATTTTGTTCACTTCTGG TGTTAATGATGATAGCTGACAATCAATTAAATAAATGAACTGAACCTCAGTAAAATAATTCTCACAAACTGAAAATGAGC TAAGTTAAGAAATTAACCGAACTGTATGCACAGTTGGTTCAATACTCCACCAACATATAGTGTGGCTTCTTTAGAATATG ATGATCATTCACTACCCTCAATTAGCATTTGGTAGTACTCTTATGTAGTTGATAGTTGCATTTACCTGATCTCCGATCTA TCATCTGTGTGGGAATCATACTTCATATTGAATTTTTGTTGCCAACTTGATGAAGACTGTTTGTTGTTATTAGAATTAAG TGCCAAAGTTTGCAGAATTACAACAAGTTCTAGTTTATGGATTATCATTTTCTTCCTTCAATTTCTTAGCTTGCAGAGGT TTTCTCTAAGGATGGAATGTCCTTTTCGTCTACTTGTCAAAATCTTATCTCTCGACCATGGGTTATTGATGACCTTGACA CTTTCAAAATGAAATGGAGCAAGAATTCCTGGAGAAAGGCAAGTTTCCATTGCTATAGAAACATACAATATTATGATGCA TTTGATGTTTTCTGGCATATCTTGTGCAGCAGTATCATCCTGATCAATTTGTTTATCATGACAGGTTATCATATTTGTTG ATAACTCAGGCGCCGATATCATTTTGGGTATTTTGCCATTTGCGAGGGAGCTTCTTCGCCGTGGGGTTCAGGTATGGACC AATGTGTTGTATTACTTAGAATTTATTTTGCATGGTAAGGAATTTAGAAGAACTGCAGATTTTGTTAATCTATTTTAAGT ACTTTAAAGTAGAGTAATTGTTACTTGTTTTAGTTGTGATAGTATTTGTCCATTTTAAAGTTTTGTGAAATTGAAGGTTA TTTTCATGTGCTTTTCTTATGGATGTCTTGTTCTTATGAATGTAGGTTGTACTGGCTGCTAATGACTTACCCTCCATAAA TGATATAACTTACCCTGAGCTACTTGAAATTATATCAACGGTAAGGAGAGTTAGGTTTGGCAAATTTTTGCTATGATGAC CAAGTTCTTTCCTAACACTGTTATATTAGTTACCAGTTAAAGGATGAAGAAGGAGGTCTCATGGGTGTTAGCACTTCAAA TCTTGTAATTGCCAACTCTGGAAATGGTTTACCTGTAAGAAAATCATCTTAGTACTTCTGGTAGATTTATATATGATGAT TACATTACATGTTTCATTCTTGTTTTGTTCAATGGATTGCAGGGCATTGATCTTAATAAGGTGTCAGAGGAGATTGCTTT CCATGCAAATGATGCAGATCTTGTCATCTTAGAAGGGATGGTAAGTTCTTCCTTTGACATTATATGCTTTCTGTTTGGTT AGACAAGTTGCATGCTCCTGCAGTTGGGTTGGGAAAGTTGAAAGCTCTAGCATATTTGGATAGCTTCTCTTTAACAGAGT CAATTTTGAAACCCGGAAGCTACTCATAGAAGCTTTTCTCGAAAATTGATTTTGGCTTTAGAACCAATTCAGTGTCCTAA ATTGATGCTTCATTAAACACTAACCAATTTCTTTTGACAGGGTCGTGGAATTGAAACAAATCTTTTTGCTGAATTTAAAT GTGATTCCCTTAAGATTGCTATGGTAATGCATTTTTTTAATGTGATTCCCTGAATTTAATTGTGAAAATTTGAATACTGA TGATTCTATTCTTACTTCTTTTTCCTTTCTTGCCATTTGCCCATTTCTTTTTACAGGTGAAGCATCCTGAGGTTGCAGAA TTTCTCGGATCCCGTTTATATGACTGTGTGATCAAATACATTGAAGTTTAGAGCTTACAATTAAGGCTGATTCTTTACTC TGCTGATACTACATTTGCAATTTTTAGGTCCAATGGTCCATTATTTCAGCAGCATATCTATTACAATATAATAAATTTGA AGAGTGAAATGAGAATAAATTTTGAGTAGTCTTGCAATACTGAATACTTAATATTCTCTCTCATAGTATTTTCTTTTTTG TTACATCTTGGAATAGAATTC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0194600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGATAGTGAAACCGATTTTATCACCAGTTCAAACACACAGCAGCCATTGGAACTCTCCATCAATCTCCTCCTTCTC AACCAATAAGTCCTTGTCTTTTCCCCAACTCAAGTGCATTCTTCATCCCCCACAATCCACCGTCCACTCCAAACTAGTGA TATCAGAAGAAGCAATGCAGAGTAGCACTTCAAAGCTGGTTCGTTTCCCATTGTTGAAGAATGACAATTACACAGCCAGC ACCATTCCATGGAGGTTTCCTTCCGATGATCCACACATTCCCACTCCGACAGAGTTATCTTGGATTAATCTCCTTCTCAA TACCATCCCCTCCTTCAAGAAGCGTGCTGAGAGTGATACCTCTGTTCCTGATGCTGCAAATAAAGCAGAAATATTTGCTC AAAGGTATGCTAAAATCCTTGAAGATTTCAAGAAAGATCCTGCAAGTCAAGGCGGGCCTCCTGATGTCCTTTTTCTATGC AGACTTCGTGAGCAAGAACTTAGAGAATTGGGATTCATAGACATCTTTAAGAAAGTCAAGGAGGAAGAGAATGCAAAGGC CATTGCCCTATTTGAGAGTGTTGTTCGCCTTAATGATGCCATTGAAGATGAAGGAAAGCGGGTTGAAAATCTAATGAGAG GGATTTTGGCAGGGAACATATTTGATCTTGGTTCTGCCCATCTTGCAGAGGTTTTCTCTAAGGATGGAATGTCCTTTTCG TCTACTTGTCAAAATCTTATCTCTCGACCATGGGTTATTGATGACCTTGACACTTTCAAAATGAAATGGAGCAAGAATTC CTGGAGAAAGGTTATCATATTTGTTGATAACTCAGGCGCCGATATCATTTTGGGTATTTTGCCATTTGCGAGGGAGCTTC TTCGCCGTGGGGTTCAGGTTGTACTGGCTGCTAATGACTTACCCTCCATAAATGATATAACTTACCCTGAGCTACTTGAA ATTATATCAACGTTAAAGGATGAAGAAGGAGGTCTCATGGGTGTTAGCACTTCAAATCTTGTAATTGCCAACTCTGGAAA TGGTTTACCTGGCATTGATCTTAATAAGGTGTCAGAGGAGATTGCTTTCCATGCAAATGATGCAGATCTTGTCATCTTAG AAGGGATGGGTCGTGGAATTGAAACAAATCTTTTTGCTGAATTTAAATGTGATTCCCTTAAGATTGCTATGGTGAAGCAT CCTGAGGTTGCAGAATTTCTCGGATCCCGTTTATATGACTGTGTGATCAAATACATTGAAGTTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0194600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGIVKPILSPVQTHSSHWNSPSISSFSTNKSLSFPQLKCILHPPQSTVHSKLVISEEAMQSSTSKLVRFPLLKNDNYTAS TIPWRFPSDDPHIPTPTELSWINLLLNTIPSFKKRAESDTSVPDAANKAEIFAQRYAKILEDFKKDPASQGGPPDVLFLC RLREQELRELGFIDIFKKVKEEENAKAIALFESVVRLNDAIEDEGKRVENLMRGILAGNIFDLGSAHLAEVFSKDGMSFS STCQNLISRPWVIDDLDTFKMKWSKNSWRKVIIFVDNSGADIILGILPFARELLRRGVQVVLAANDLPSINDITYPELLE IISTLKDEEGGLMGVSTSNLVIANSGNGLPGIDLNKVSEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKH PEVAEFLGSRLYDCVIKYIEV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12280
67 421 355 7.9E-173 –
PANTHER
PTHR12280:SF38
67 421 355 7.9E-173 –
SUPERFAMILY
SSF111321
79 418 340 1.12E-92
IPR036075
Gene3D
G3DSA:1.20.1700.10
84 173 90 9.7E-37
IPR035073
Pfam
PF01937
109 411 303 3.6E-52
IPR002791
Gene3D
G3DSA:3.40.50.10880
252 420 169 3.8E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0194600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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