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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0199600 |
| Transcript ID | LotjaGi5g1v0199600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein yippee-like; TAIR: AT4G27745.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745; TrEMBL-Plants: tr|W9QPR5|W9QPR5_9ROSA Protein yippee-like; Found in the gene: LotjaGi5g1v0199600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49748522..49749513) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGATTTGATTGGACCCAGATTGTACAGTTGCTTTAATTGTAGAAACCATGTTGCTCTTCATGATGATGTGATATC AAAAGCCTTTCAGGTAAAAATAGTAAAATACTCTTAAGCTTTTTCCTATTTTGTTCTGAATTTTGATATATGATCCACTA CCATTTCCATCGTGGTAATTGGATTTGGATGAATTCTAGTTTACTTTCATATATTCAATTTGTTGTTTGGATATGGACTT CTCATCTATAATTAATTCTATAGACAAAACCAACTTTACCCGTGGCGGATATGAAAGGGGTGCATGCATATGCCATGACA CTACCCAAAATTTTGAAATTCTCTTAATGAGACCATATTTTATTGGATAAAATATTTGGTCATATGAACATATTAGCTTC TAGTCCTCTATAGAGTCCAATTATCTAATAAAACTTGTGCATCTTTTTTTCTTTTTTCTTTCACATTATGGAAATGCCAT ATTGAGGATCAAAGTGTGCCAAGACCCCATACTCAATGTTCTGCATTCACAGTTTATACAAATGAGTTAACATATTTTTT TATGTTAAATTCTTTTATTGTAAGCTGAAACAAGAAGTTTACGAAATGATATTCTCATGAGCCTTGATAGATTAATTTAT AAACATTTAAACATTTTTCTATTTTTATTGTGGTCACCCTCAACTTGAAAGTCATTCTGTAAGTTTTCAATTTGATTCAT TAATATCTTTGGGAGAATTTGATGATTCCAATTTAAATTTTCAGGGAAGAAATGGACGTGCTTTTCTGTTCTCCCATGCA ATGAACATAAAAGTAGGGCCAAAAGAAGACAGGCAACTCATGACTGGTCTCCACACAATTGCTGAGGTCTATTGTTGTGA TTGCCAGCAAGTGCTTGGTTGGAAGTATGAACGTGCCTATGAGGAGGCACAGAAGTACAAGGAAGGAAAGTTCATACTTG AAAAGTCTAAAATTGCCACTGAAAACTGGTAG
CDS sequence (LotjaGi5g1v0199600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTTGATTGGACCCAGATTGTACAGTTGCTTTAATTGTAGAAACCATGTTGCTCTTCATGATGATGTGATATC AAAAGCCTTTCAGGGAAGAAATGGACGTGCTTTTCTGTTCTCCCATGCAATGAACATAAAAGTAGGGCCAAAAGAAGACA GGCAACTCATGACTGGTCTCCACACAATTGCTGAGGTCTATTGTTGTGATTGCCAGCAAGTGCTTGGTTGGAAGTATGAA CGTGCCTATGAGGAGGCACAGAAGTACAAGGAAGGAAAGTTCATACTTGAAAAGTCTAAAATTGCCACTGAAAACTGGTA G
Protein sequence (LotjaGi5g1v0199600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDLIGPRLYSCFNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNIKVGPKEDRQLMTGLHTIAEVYCCDCQQVLGWKYE RAYEEAQKYKEGKFILEKSKIATENW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 106 | 104 | 2.3E-68 | – | |
| PANTHER | 3 | 106 | 104 | 2.3E-68 | ||
| ProSiteProfiles | 8 | 105 | 98 | 49.806 | ||
| Pfam | 10 | 103 | 94 | 1.8E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0199600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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