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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0200000 |
| Transcript ID | LotjaGi5g1v0200000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter family protein; TAIR: AT4G24120.1 YELLOW STRIPE like 1; Swiss-Prot: sp|Q6R3L0|YSL1_ARATH Metal-nicotianamine transporter YSL1; TrEMBL-Plants: tr|V7CWB4|V7CWB4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49853156..49856032) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGATATCCCCAACAAGTCCCCTCAACATGGAAGAAATGAAGAAACTGGAGATTGAAAGAGATCATCAGGAAATGGA AGAGCAGCTTCCAATTGGTGAGATCCAACCTCAGAAATGGTCAGAACAGATAACACTGAGAGGGCTATTAGTGAGCTTGA TGATTGGAATCATTTACAGCATAATAGTCATGAAGCTCAACCTCACCACTGGCATGGTTCCTAACTTGAATTCCTCTGCT GCTCTCATTGCTTTTTTGCTTATAAGAAGCTGGACCAAAGTGCTTAACAAGGCTGGCTTTGTCTCCAAGCCCTTCACTCG CCAAGAAAACACCATCATACAGACTTGTGCTGTTGCATGCTATAGCATTGCTGTTGGAGGTAATAAGCTTTTCATTTATC ATTTTGAACACACACAAAATGAGGTCAGTTATATGGATCACCTGATCCATATTTAAGATACGGTCAGGCCAGTTTTACGC TGGCTGTTGCAGGCCTGACACAACATTCTTCCTTTACTCGGGCACAGCATAGGTGGAGTTACACACATAGCAACAGTCTT ATCCCAGTAAATAAATGAGGTCGGCTATATGAATCATCCGATCCATATTAAAGATACAATCAGTTTTATGTTGGCTGATG CAAGCCTATACTTTACTGGGGTTTAGCTCCGGCTATGGCACAGTATAGGCAGAGTTACACACACAAACATGTATATCTTC TTCACATTATTTACAAGTGGGGTCTATATCTATGGTTTATGATGCAGGAGGATTTGCTTCTTATCTGTTGGGATTGAACA GGAAGACTTATGAGTTGTCAGGAGTGGGGACGGAAGGTAACAATCCAAATGCTGTTAAAGAACCTGGATTTGGTTGGATG TCTGGCTACCTTTTTGTGGTTTGCTTTGTTGGCCTCTTTGTCTTGATTCCACTCAGGAAGGTACTTATTTTGTATCCTAG TTTCTGCAGCATTTTAGATGTTTTTCATCACTGCTCATCTTCCAGCACTATGAAAAGTTCAAGAAGAATTAATATAGTAT TTGTTAAAATCACTCATCAATTCATTGGGATCTGCACTTTCTTTTGCTACAGGTCATGATAGTTGACCTCAAATTACCTT ATCCTAGTGGTTTGGCAACAGCAGTTCTCATCAATGGTTTCCATACACAGGGTGACAAAATGGCCAAGTACTCTACTCAT CTCTTTTATTCATCAGCTTTAATCTGTAGCTATTTGGAAGATTAATCTCACATATAACTTTCTATTTTCAATCAAATTCA AGGTACTTATTGATCATTTTTCTATTGTACCATTGCAGGAAGCAAGTTAAAGGATTCATGAAGTATTTTTCTATCAGTTT CTTATGGGGTTTATTCAAGTGGTTCTTCTCAGGCATAGAGGAGTGTGGATTCGAACAGTTCCCTACCTTTGGATTGCAAG CTTGGAAGCAAACGTATGCTTTTCAAGCATAAATTAAGATCACAGTTTCTTTGAAATGCATGGATGCTTCCATTTCACAT GTTGCTGATCTTGTTGTTTGAATTTAATTCGCAGATTCTACTTCGACTTCAGCATGACTTATGTGGGAGCAGGAATGATT TGCTCCCACCTTGTGAACTTGTCTTTGCTCCTTGGAGCTGTGCTGTCTTTCGGAGTCATGTTTCCGCTTATTGATCGGCT TAAAGGAGATTGGTTCCCTGACAAATTAGAAGAGAGTAACATGAAGGGTTTGTATGGTTACAAGGTTTTTCTATCAATTG CTCTGATCCTTGGTGATGGCATATACAGCTTCACTAAGATTCTAGTTTCCACAGCCCTCAGTGTACTTGAAAGAATGAAG AGCAAGACTCATAAAAATGGTAAGAGCTGTAACAGGTTTACTCTTTCTTCTTTGAAATCTTTCAAGAATAAAATATCTGA TATCTAATGTTGAGTTCATTTTCTTACTTAGATGCTGAGAGGCAGGGGAATCGCACTGGGAACCTTAAGCAAGCTGAAAC ATTGGTCAGGGAGAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACTTTGGTTTCCATAATTATAATCC CACACATGTTTCCTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCCATCCCTTGCATTCTGTAATGCT TATGGAGCAGGTCTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCTTCACACTCGCAGCGATGACCGG AAAAGAGAATGGTGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATCTCAGTGGCTTGCATTCTGATGC AAGATTTCAAAACTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCAAATAATCGGCACCGCAATTGGC TGTGTGGCAACTCCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACCCGCATGGAGAATTCAAAGCCCC ATACGCGCTAATTTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTACCCGACCATTGCTTGCAGCTTT GCTATGTGTTCTTTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCAGAAGATAGGGAAATGGATGCCA TTACCAATGGTCATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGTGCATGGGTAGTTTGGTTGTGTT CGTGTGGCACAAGCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCTGGATTGATCTGTGGTGAAGGAC TATGGACTCTTCCTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCATGAAATTTGTTGATTCCTGA
CDS sequence (LotjaGi5g1v0200000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAGAGCTGTAACAGATGCTGAGAGGCAGGGGAATCGCACTGGGAACCTTAAGCAAGCTGAAACATTGGTCAGGGA GAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACTTTGGTTTCCATAATTATAATCCCACACATGTTTC CTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCCATCCCTTGCATTCTGTAATGCTTATGGAGCAGGT CTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCTTCACACTCGCAGCGATGACCGGAAAAGAGAATGG TGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATCTCAGTGGCTTGCATTCTGATGCAAGATTTCAAAA CTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCAAATAATCGGCACCGCAATTGGCTGTGTGGCAACT CCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACCCGCATGGAGAATTCAAAGCCCCATACGCGCTAAT TTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTACCCGACCATTGCTTGCAGCTTTGCTATGTGTTCT TTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCAGAAGATAGGGAAATGGATGCCATTACCAATGGTC ATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGTGCATGGGTAGTTTGGTTGTGTTCGTGTGGCACAA GCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCTGGATTGATCTGTGGTGAAGGACTATGGACTCTTC CTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCATGAAATTTGTTGATTCCTGA
Protein sequence (LotjaGi5g1v0200000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRAVTDAERQGNRTGNLKQAETLVRESIPMWIGVVGYLVFTLVSIIIIPHMFPQLKWYFVVVAYIFAPSLAFCNAYGAG LTDINMAYNYGKVALFTLAAMTGKENGVVAGLVGCGIFKSVISVACILMQDFKTAHYTHTSPRAMFVCQIIGTAIGCVAT PLSFLLYYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPDHCLQLCYVFFAFAIGANMVRDLSPQKIGKWMPLPMV MAVPFLVGAYFAIDMCMGSLVVFVWHKLKSKNAESMIPAVASGLICGEGLWTLPAAILALAKINPPICMKFVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 10 | 314 | 305 | 1.3E-182 | – | |
| PANTHER | 10 | 314 | 305 | 1.3E-182 | – | |
| Pfam | 18 | 298 | 281 | 3.4E-65 | ||
| TIGRFAM | 25 | 299 | 275 | 1.7E-65 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 29 | 49 | 21 | - | – | |
| Phobius | 50 | 55 | 6 | - | – | |
| Phobius | 56 | 78 | 23 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 79 | 107 | 29 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 108 | 132 | 25 | - | – | |
| Phobius | 133 | 143 | 11 | - | – | |
| Phobius | 144 | 168 | 25 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 169 | 204 | 36 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| Phobius | 224 | 242 | 19 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 243 | 265 | 23 | - | – | |
| Phobius | 266 | 276 | 11 | - | – | |
| Phobius | 277 | 301 | 25 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| Phobius | 302 | 314 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0200000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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