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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0200000 |
| Transcript ID | LotjaGi5g1v0200000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter family protein; TAIR: AT4G24120.1 YELLOW STRIPE like 1; Swiss-Prot: sp|Q6R3L0|YSL1_ARATH Metal-nicotianamine transporter YSL1; TrEMBL-Plants: tr|V7CWB4|V7CWB4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49853159..49856032) extracted from Lotus japonicus Gifu genome v1.2.
ATGATATCCCCAACAAGTCCCCTCAACATGGAAGAAATGAAGAAACTGGAGATTGAAAGAGATCATCAGGAAATGGAAGA GCAGCTTCCAATTGGTGAGATCCAACCTCAGAAATGGTCAGAACAGATAACACTGAGAGGGCTATTAGTGAGCTTGATGA TTGGAATCATTTACAGCATAATAGTCATGAAGCTCAACCTCACCACTGGCATGGTTCCTAACTTGAATTCCTCTGCTGCT CTCATTGCTTTTTTGCTTATAAGAAGCTGGACCAAAGTGCTTAACAAGGCTGGCTTTGTCTCCAAGCCCTTCACTCGCCA AGAAAACACCATCATACAGACTTGTGCTGTTGCATGCTATAGCATTGCTGTTGGAGGTAATAAGCTTTTCATTTATCATT TTGAACACACACAAAATGAGGTCAGTTATATGGATCACCTGATCCATATTTAAGATACGGTCAGGCCAGTTTTACGCTGG CTGTTGCAGGCCTGACACAACATTCTTCCTTTACTCGGGCACAGCATAGGTGGAGTTACACACATAGCAACAGTCTTATC CCAGTAAATAAATGAGGTCGGCTATATGAATCATCCGATCCATATTAAAGATACAATCAGTTTTATGTTGGCTGATGCAA GCCTATACTTTACTGGGGTTTAGCTCCGGCTATGGCACAGTATAGGCAGAGTTACACACACAAACATGTATATCTTCTTC ACATTATTTACAAGTGGGGTCTATATCTATGGTTTATGATGCAGGAGGATTTGCTTCTTATCTGTTGGGATTGAACAGGA AGACTTATGAGTTGTCAGGAGTGGGGACGGAAGGTAACAATCCAAATGCTGTTAAAGAACCTGGATTTGGTTGGATGTCT GGCTACCTTTTTGTGGTTTGCTTTGTTGGCCTCTTTGTCTTGATTCCACTCAGGAAGGTACTTATTTTGTATCCTAGTTT CTGCAGCATTTTAGATGTTTTTCATCACTGCTCATCTTCCAGCACTATGAAAAGTTCAAGAAGAATTAATATAGTATTTG TTAAAATCACTCATCAATTCATTGGGATCTGCACTTTCTTTTGCTACAGGTCATGATAGTTGACCTCAAATTACCTTATC CTAGTGGTTTGGCAACAGCAGTTCTCATCAATGGTTTCCATACACAGGGTGACAAAATGGCCAAGTACTCTACTCATCTC TTTTATTCATCAGCTTTAATCTGTAGCTATTTGGAAGATTAATCTCACATATAACTTTCTATTTTCAATCAAATTCAAGG TACTTATTGATCATTTTTCTATTGTACCATTGCAGGAAGCAAGTTAAAGGATTCATGAAGTATTTTTCTATCAGTTTCTT ATGGGGTTTATTCAAGTGGTTCTTCTCAGGCATAGAGGAGTGTGGATTCGAACAGTTCCCTACCTTTGGATTGCAAGCTT GGAAGCAAACGTATGCTTTTCAAGCATAAATTAAGATCACAGTTTCTTTGAAATGCATGGATGCTTCCATTTCACATGTT GCTGATCTTGTTGTTTGAATTTAATTCGCAGATTCTACTTCGACTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGC TCCCACCTTGTGAACTTGTCTTTGCTCCTTGGAGCTGTGCTGTCTTTCGGAGTCATGTTTCCGCTTATTGATCGGCTTAA AGGAGATTGGTTCCCTGACAAATTAGAAGAGAGTAACATGAAGGGTTTGTATGGTTACAAGGTTTTTCTATCAATTGCTC TGATCCTTGGTGATGGCATATACAGCTTCACTAAGATTCTAGTTTCCACAGCCCTCAGTGTACTTGAAAGAATGAAGAGC AAGACTCATAAAAATGGTAAGAGCTGTAACAGGTTTACTCTTTCTTCTTTGAAATCTTTCAAGAATAAAATATCTGATAT CTAATGTTGAGTTCATTTTCTTACTTAGATGCTGAGAGGCAGGGGAATCGCACTGGGAACCTTAAGCAAGCTGAAACATT GGTCAGGGAGAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACTTTGGTTTCCATAATTATAATCCCAC ACATGTTTCCTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCCATCCCTTGCATTCTGTAATGCTTAT GGAGCAGGTCTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCTTCACACTCGCAGCGATGACCGGAAA AGAGAATGGTGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATCTCAGTGGCTTGCATTCTGATGCAAG ATTTCAAAACTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCAAATAATCGGCACCGCAATTGGCTGT GTGGCAACTCCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACCCGCATGGAGAATTCAAAGCCCCATA CGCGCTAATTTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTACCCGACCATTGCTTGCAGCTTTGCT ATGTGTTCTTTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCAGAAGATAGGGAAATGGATGCCATTA CCAATGGTCATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGTGCATGGGTAGTTTGGTTGTGTTCGT GTGGCACAAGCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCTGGATTGATCTGTGGTGAAGGACTAT GGACTCTTCCTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCATGAAATTTGTTGATTCCTGA
CDS sequence (LotjaGi5g1v0200000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATCCCCAACAAGTCCCCTCAACATGGAAGAAATGAAGAAACTGGAGATTGAAAGAGATCATCAGGAAATGGAAGA GCAGCTTCCAATTGGTGAGATCCAACCTCAGAAATGGTCAGAACAGATAACACTGAGAGGGCTATTAGTGAGCTTGATGA TTGGAATCATTTACAGCATAATAGTCATGAAGCTCAACCTCACCACTGGCATGGTTCCTAACTTGAATTCCTCTGCTGCT CTCATTGCTTTTTTGCTTATAAGAAGCTGGACCAAAGTGCTTAACAAGGCTGGCTTTGTCTCCAAGCCCTTCACTCGCCA AGAAAACACCATCATACAGACTTGTGCTGTTGCATGCTATAGCATTGCTGTTGGAGGAGGATTTGCTTCTTATCTGTTGG GATTGAACAGGAAGACTTATGAGTTGTCAGGAGTGGGGACGGAAGGTAACAATCCAAATGCTGTTAAAGAACCTGGATTT GGTTGGATGTCTGGCTACCTTTTTGTGGTTTGCTTTGTTGGCCTCTTTGTCTTGATTCCACTCAGGAAGGTCATGATAGT TGACCTCAAATTACCTTATCCTAGTGGTTTGGCAACAGCAGTTCTCATCAATGGTTTCCATACACAGGGTGACAAAATGG CCAAGAAGCAAGTTAAAGGATTCATGAAGTATTTTTCTATCAGTTTCTTATGGGGTTTATTCAAGTGGTTCTTCTCAGGC ATAGAGGAGTGTGGATTCGAACAGTTCCCTACCTTTGGATTGCAAGCTTGGAAGCAAACATTCTACTTCGACTTCAGCAT GACTTATGTGGGAGCAGGAATGATTTGCTCCCACCTTGTGAACTTGTCTTTGCTCCTTGGAGCTGTGCTGTCTTTCGGAG TCATGTTTCCGCTTATTGATCGGCTTAAAGGAGATTGGTTCCCTGACAAATTAGAAGAGAGTAACATGAAGGGTTTGTAT GGTTACAAGGTTTTTCTATCAATTGCTCTGATCCTTGGTGATGGCATATACAGCTTCACTAAGATTCTAGTTTCCACAGC CCTCAGTGTACTTGAAAGAATGAAGAGCAAGACTCATAAAAATGGTAAGAGCTATGCTGAGAGGCAGGGGAATCGCACTG GGAACCTTAAGCAAGCTGAAACATTGGTCAGGGAGAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACT TTGGTTTCCATAATTATAATCCCACACATGTTTCCTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCC ATCCCTTGCATTCTGTAATGCTTATGGAGCAGGTCTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCT TCACACTCGCAGCGATGACCGGAAAAGAGAATGGTGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATC TCAGTGGCTTGCATTCTGATGCAAGATTTCAAAACTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCA AATAATCGGCACCGCAATTGGCTGTGTGGCAACTCCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACC CGCATGGAGAATTCAAAGCCCCATACGCGCTAATTTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTA CCCGACCATTGCTTGCAGCTTTGCTATGTGTTCTTTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCA GAAGATAGGGAAATGGATGCCATTACCAATGGTCATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGT GCATGGGTAGTTTGGTTGTGTTCGTGTGGCACAAGCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCT GGATTGATCTGTGGTGAAGGACTATGGACTCTTCCTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCAT GAAATTTGTTGATTCCTGA
Protein sequence (LotjaGi5g1v0200000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISPTSPLNMEEMKKLEIERDHQEMEEQLPIGEIQPQKWSEQITLRGLLVSLMIGIIYSIIVMKLNLTTGMVPNLNSSAA LIAFLLIRSWTKVLNKAGFVSKPFTRQENTIIQTCAVACYSIAVGGGFASYLLGLNRKTYELSGVGTEGNNPNAVKEPGF GWMSGYLFVVCFVGLFVLIPLRKVMIVDLKLPYPSGLATAVLINGFHTQGDKMAKKQVKGFMKYFSISFLWGLFKWFFSG IEECGFEQFPTFGLQAWKQTFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSFGVMFPLIDRLKGDWFPDKLEESNMKGLY GYKVFLSIALILGDGIYSFTKILVSTALSVLERMKSKTHKNGKSYAERQGNRTGNLKQAETLVRESIPMWIGVVGYLVFT LVSIIIIPHMFPQLKWYFVVVAYIFAPSLAFCNAYGAGLTDINMAYNYGKVALFTLAAMTGKENGVVAGLVGCGIFKSVI SVACILMQDFKTAHYTHTSPRAMFVCQIIGTAIGCVATPLSFLLYYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSAL PDHCLQLCYVFFAFAIGANMVRDLSPQKIGKWMPLPMVMAVPFLVGAYFAIDMCMGSLVVFVWHKLKSKNAESMIPAVAS GLICGEGLWTLPAAILALAKINPPICMKFVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| Coils | 8 | 28 | 21 | - | – | |
| PANTHER | 11 | 672 | 662 | 0.0 | – | |
| PANTHER | 11 | 672 | 662 | 0.0 | – | |
| TIGRFAM | 38 | 657 | 620 | 2.4E-130 | ||
| Pfam | 42 | 656 | 615 | 2.9E-140 | ||
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 44 | 63 | 20 | - | – | |
| Phobius | 66 | 70 | 5 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 110 | 20 | - | – | |
| Phobius | 111 | 133 | 23 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 134 | 159 | 26 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 160 | 181 | 22 | - | – | |
| Phobius | 182 | 220 | 39 | - | – | |
| Phobius | 221 | 238 | 18 | - | – | |
| Phobius | 239 | 268 | 30 | - | – | |
| Phobius | 269 | 299 | 31 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 300 | 319 | 20 | - | – | |
| Phobius | 320 | 339 | 20 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 340 | 386 | 47 | - | – | |
| Phobius | 387 | 407 | 21 | - | – | |
| TMHMM | 389 | 411 | 23 | - | – | |
| Phobius | 408 | 413 | 6 | - | – | |
| Phobius | 414 | 436 | 23 | - | – | |
| TMHMM | 416 | 438 | 23 | - | – | |
| Phobius | 437 | 465 | 29 | - | – | |
| TMHMM | 465 | 487 | 23 | - | – | |
| Phobius | 466 | 490 | 25 | - | – | |
| Phobius | 491 | 501 | 11 | - | – | |
| TMHMM | 502 | 524 | 23 | - | – | |
| Phobius | 502 | 526 | 25 | - | – | |
| Phobius | 527 | 562 | 36 | - | – | |
| TMHMM | 556 | 578 | 23 | - | – | |
| Phobius | 563 | 581 | 19 | - | – | |
| Phobius | 582 | 600 | 19 | - | – | |
| Phobius | 601 | 623 | 23 | - | – | |
| TMHMM | 601 | 623 | 23 | - | – | |
| Phobius | 624 | 634 | 11 | - | – | |
| Phobius | 635 | 659 | 25 | - | – | |
| TMHMM | 636 | 658 | 23 | - | – | |
| Phobius | 660 | 672 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0200000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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