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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0200000 |
| Transcript ID | LotjaGi5g1v0200000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter family protein; TAIR: AT4G24120.1 YELLOW STRIPE like 1; Swiss-Prot: sp|Q6R3L0|YSL1_ARATH Metal-nicotianamine transporter YSL1; TrEMBL-Plants: tr|V7CWB4|V7CWB4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49853159..49856032) extracted from Lotus japonicus Gifu genome v1.2.
ATGATATCCCCAACAAGTCCCCTCAACATGGAAGAAATGAAGAAACTGGAGATTGAAAGAGATCATCAGGAAATGGAAGA GCAGCTTCCAATTGGTGAGATCCAACCTCAGAAATGGTCAGAACAGATAACACTGAGAGGGCTATTAGTGAGCTTGATGA TTGGAATCATTTACAGCATAATAGTCATGAAGCTCAACCTCACCACTGGCATGGTTCCTAACTTGAATTCCTCTGCTGCT CTCATTGCTTTTTTGCTTATAAGAAGCTGGACCAAAGTGCTTAACAAGGCTGGCTTTGTCTCCAAGCCCTTCACTCGCCA AGAAAACACCATCATACAGACTTGTGCTGTTGCATGCTATAGCATTGCTGTTGGAGGTAATAAGCTTTTCATTTATCATT TTGAACACACACAAAATGAGGTCAGTTATATGGATCACCTGATCCATATTTAAGATACGGTCAGGCCAGTTTTACGCTGG CTGTTGCAGGCCTGACACAACATTCTTCCTTTACTCGGGCACAGCATAGGTGGAGTTACACACATAGCAACAGTCTTATC CCAGTAAATAAATGAGGTCGGCTATATGAATCATCCGATCCATATTAAAGATACAATCAGTTTTATGTTGGCTGATGCAA GCCTATACTTTACTGGGGTTTAGCTCCGGCTATGGCACAGTATAGGCAGAGTTACACACACAAACATGTATATCTTCTTC ACATTATTTACAAGTGGGGTCTATATCTATGGTTTATGATGCAGGAGGATTTGCTTCTTATCTGTTGGGATTGAACAGGA AGACTTATGAGTTGTCAGGAGTGGGGACGGAAGGTAACAATCCAAATGCTGTTAAAGAACCTGGATTTGGTTGGATGTCT GGCTACCTTTTTGTGGTTTGCTTTGTTGGCCTCTTTGTCTTGATTCCACTCAGGAAGGTACTTATTTTGTATCCTAGTTT CTGCAGCATTTTAGATGTTTTTCATCACTGCTCATCTTCCAGCACTATGAAAAGTTCAAGAAGAATTAATATAGTATTTG TTAAAATCACTCATCAATTCATTGGGATCTGCACTTTCTTTTGCTACAGGTCATGATAGTTGACCTCAAATTACCTTATC CTAGTGGTTTGGCAACAGCAGTTCTCATCAATGGTTTCCATACACAGGGTGACAAAATGGCCAAGTACTCTACTCATCTC TTTTATTCATCAGCTTTAATCTGTAGCTATTTGGAAGATTAATCTCACATATAACTTTCTATTTTCAATCAAATTCAAGG TACTTATTGATCATTTTTCTATTGTACCATTGCAGGAAGCAAGTTAAAGGATTCATGAAGTATTTTTCTATCAGTTTCTT ATGGGGTTTATTCAAGTGGTTCTTCTCAGGCATAGAGGAGTGTGGATTCGAACAGTTCCCTACCTTTGGATTGCAAGCTT GGAAGCAAACGTATGCTTTTCAAGCATAAATTAAGATCACAGTTTCTTTGAAATGCATGGATGCTTCCATTTCACATGTT GCTGATCTTGTTGTTTGAATTTAATTCGCAGATTCTACTTCGACTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGC TCCCACCTTGTGAACTTGTCTTTGCTCCTTGGAGCTGTGCTGTCTTTCGGAGTCATGTTTCCGCTTATTGATCGGCTTAA AGGAGATTGGTTCCCTGACAAATTAGAAGAGAGTAACATGAAGGGTTTGTATGGTTACAAGGTTTTTCTATCAATTGCTC TGATCCTTGGTGATGGCATATACAGCTTCACTAAGATTCTAGTTTCCACAGCCCTCAGTGTACTTGAAAGAATGAAGAGC AAGACTCATAAAAATGGTAAGAGCTGTAACAGGTTTACTCTTTCTTCTTTGAAATCTTTCAAGAATAAAATATCTGATAT CTAATGTTGAGTTCATTTTCTTACTTAGATGCTGAGAGGCAGGGGAATCGCACTGGGAACCTTAAGCAAGCTGAAACATT GGTCAGGGAGAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACTTTGGTTTCCATAATTATAATCCCAC ACATGTTTCCTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCCATCCCTTGCATTCTGTAATGCTTAT GGAGCAGGTCTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCTTCACACTCGCAGCGATGACCGGAAA AGAGAATGGTGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATCTCAGTGGCTTGCATTCTGATGCAAG ATTTCAAAACTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCAAATAATCGGCACCGCAATTGGCTGT GTGGCAACTCCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACCCGCATGGAGAATTCAAAGCCCCATA CGCGCTAATTTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTACCCGACCATTGCTTGCAGCTTTGCT ATGTGTTCTTTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCAGAAGATAGGGAAATGGATGCCATTA CCAATGGTCATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGTGCATGGGTAGTTTGGTTGTGTTCGT GTGGCACAAGCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCTGGATTGATCTGTGGTGAAGGACTAT GGACTCTTCCTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCATGAAATTTGTTGATTCCTGA
CDS sequence (LotjaGi5g1v0200000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATCCCCAACAAGTCCCCTCAACATGGAAGAAATGAAGAAACTGGAGATTGAAAGAGATCATCAGGAAATGGAAGA GCAGCTTCCAATTGGTGAGATCCAACCTCAGAAATGGTCAGAACAGATAACACTGAGAGGGCTATTAGTGAGCTTGATGA TTGGAATCATTTACAGCATAATAGTCATGAAGCTCAACCTCACCACTGGCATGGTTCCTAACTTGAATTCCTCTGCTGCT CTCATTGCTTTTTTGCTTATAAGAAGCTGGACCAAAGTGCTTAACAAGGCTGGCTTTGTCTCCAAGCCCTTCACTCGCCA AGAAAACACCATCATACAGACTTGTGCTGTTGCATGCTATAGCATTGCTGTTGGAGGAGGATTTGCTTCTTATCTGTTGG GATTGAACAGGAAGACTTATGAGTTGTCAGGAGTGGGGACGGAAGGTAACAATCCAAATGCTGTTAAAGAACCTGGATTT GGTTGGATGTCTGGCTACCTTTTTGTGGTTTGCTTTGTTGGCCTCTTTGTCTTGATTCCACTCAGGAAGGTCATGATAGT TGACCTCAAATTACCTTATCCTAGTGGTTTGGCAACAGCAGTTCTCATCAATGGTTTCCATACACAGGGTGACAAAATGG CCAAGAAGCAAGTTAAAGGATTCATGAAGTATTTTTCTATCAGTTTCTTATGGGGTTTATTCAAGTGGTTCTTCTCAGGC ATAGAGGAGTGTGGATTCGAACAGTTCCCTACCTTTGGATTGCAAGCTTGGAAGCAAACATTCTACTTCGACTTCAGCAT GACTTATGTGGGAGCAGGAATGATTTGCTCCCACCTTGTGAACTTGTCTTTGCTCCTTGGAGCTGTGCTGTCTTTCGGAG TCATGTTTCCGCTTATTGATCGGCTTAAAGGAGATTGGTTCCCTGACAAATTAGAAGAGAGTAACATGAAGGGTTTGTAT GGTTACAAGGTTTTTCTATCAATTGCTCTGATCCTTGGTGATGGCATATACAGCTTCACTAAGATTCTAGTTTCCACAGC CCTCAGTGTACTTGAAAGAATGAAGAGCAAGACTCATAAAAATGATGCTGAGAGGCAGGGGAATCGCACTGGGAACCTTA AGCAAGCTGAAACATTGGTCAGGGAGAGCATTCCCATGTGGATTGGGGTCGTTGGATACCTTGTTTTCACTTTGGTTTCC ATAATTATAATCCCACACATGTTTCCTCAGTTGAAATGGTACTTCGTTGTGGTTGCTTACATTTTTGCTCCATCCCTTGC ATTCTGTAATGCTTATGGAGCAGGTCTCACTGATATAAACATGGCATATAATTATGGCAAAGTTGCGCTCTTCACACTCG CAGCGATGACCGGAAAAGAGAATGGTGTGGTGGCCGGACTTGTAGGCTGCGGTATCTTCAAGTCTGTGATCTCAGTGGCT TGCATTCTGATGCAAGATTTCAAAACTGCTCATTACACACACACCTCTCCCAGGGCAATGTTCGTATGCCAAATAATCGG CACCGCAATTGGCTGTGTGGCAACTCCTCTGAGCTTCTTGCTCTACTACAAGGCATTTGATGTGGGCAACCCGCATGGAG AATTCAAAGCCCCATACGCGCTAATTTACAGAAACATGGCGGTTATAGGTGTTCAAGGTTTCTCAGCATTACCCGACCAT TGCTTGCAGCTTTGCTATGTGTTCTTTGCTTTTGCCATAGGAGCAAACATGGTGAGAGATTTGTCACCCCAGAAGATAGG GAAATGGATGCCATTACCAATGGTCATGGCTGTGCCATTTCTGGTGGGGGCGTACTTTGCAATCGATATGTGCATGGGTA GTTTGGTTGTGTTCGTGTGGCACAAGCTCAAGTCCAAGAATGCGGAGTCGATGATTCCGGCGGTTGCCTCTGGATTGATC TGTGGTGAAGGACTATGGACTCTTCCTGCTGCTATTCTTGCTCTTGCAAAAATCAATCCTCCTATCTGCATGAAATTTGT TGATTCCTGA
Protein sequence (LotjaGi5g1v0200000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISPTSPLNMEEMKKLEIERDHQEMEEQLPIGEIQPQKWSEQITLRGLLVSLMIGIIYSIIVMKLNLTTGMVPNLNSSAA LIAFLLIRSWTKVLNKAGFVSKPFTRQENTIIQTCAVACYSIAVGGGFASYLLGLNRKTYELSGVGTEGNNPNAVKEPGF GWMSGYLFVVCFVGLFVLIPLRKVMIVDLKLPYPSGLATAVLINGFHTQGDKMAKKQVKGFMKYFSISFLWGLFKWFFSG IEECGFEQFPTFGLQAWKQTFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSFGVMFPLIDRLKGDWFPDKLEESNMKGLY GYKVFLSIALILGDGIYSFTKILVSTALSVLERMKSKTHKNDAERQGNRTGNLKQAETLVRESIPMWIGVVGYLVFTLVS IIIIPHMFPQLKWYFVVVAYIFAPSLAFCNAYGAGLTDINMAYNYGKVALFTLAAMTGKENGVVAGLVGCGIFKSVISVA CILMQDFKTAHYTHTSPRAMFVCQIIGTAIGCVATPLSFLLYYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPDH CLQLCYVFFAFAIGANMVRDLSPQKIGKWMPLPMVMAVPFLVGAYFAIDMCMGSLVVFVWHKLKSKNAESMIPAVASGLI CGEGLWTLPAAILALAKINPPICMKFVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| Coils | 8 | 28 | 21 | - | – | |
| PANTHER | 11 | 669 | 659 | 0.0 | – | |
| PANTHER | 11 | 669 | 659 | 0.0 | – | |
| TIGRFAM | 38 | 654 | 617 | 2.0E-129 | ||
| Pfam | 42 | 653 | 612 | 2.5E-140 | ||
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 44 | 63 | 20 | - | – | |
| Phobius | 66 | 70 | 5 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 110 | 20 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 111 | 133 | 23 | - | – | |
| Phobius | 134 | 159 | 26 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 160 | 181 | 22 | - | – | |
| Phobius | 182 | 220 | 39 | - | – | |
| Phobius | 221 | 238 | 18 | - | – | |
| Phobius | 239 | 268 | 30 | - | – | |
| Phobius | 269 | 299 | 31 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 300 | 319 | 20 | - | – | |
| Phobius | 320 | 339 | 20 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 340 | 383 | 44 | - | – | |
| Phobius | 384 | 404 | 21 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| Phobius | 405 | 410 | 6 | - | – | |
| Phobius | 411 | 433 | 23 | - | – | |
| TMHMM | 413 | 435 | 23 | - | – | |
| Phobius | 434 | 462 | 29 | - | – | |
| TMHMM | 462 | 484 | 23 | - | – | |
| Phobius | 463 | 487 | 25 | - | – | |
| Phobius | 488 | 498 | 11 | - | – | |
| TMHMM | 499 | 521 | 23 | - | – | |
| Phobius | 499 | 523 | 25 | - | – | |
| Phobius | 524 | 559 | 36 | - | – | |
| TMHMM | 553 | 575 | 23 | - | – | |
| Phobius | 560 | 578 | 19 | - | – | |
| Phobius | 579 | 597 | 19 | - | – | |
| Phobius | 598 | 620 | 23 | - | – | |
| TMHMM | 598 | 620 | 23 | - | – | |
| Phobius | 621 | 631 | 11 | - | – | |
| Phobius | 632 | 656 | 25 | - | – | |
| TMHMM | 633 | 655 | 23 | - | – | |
| Phobius | 657 | 669 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0200000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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