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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0201000 |
| Transcript ID | LotjaGi5g1v0201000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase; TAIR: AT1G32860.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q8L868|E1311_ARATH Glucan endo-1,3-beta-glucosidase 11; TrEMBL-Plants: tr|V7D0H2|V7D0H2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0201000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50000061..50003586) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTTTATTATTTATTTATTTATATATTTATCTCCCTAAAATAAAATAAAATATCTTCTCTCTATCTCTCTGTCTCTTC ACTCCTCAAGTAAAGTAGTAAACCGTGGAAGCAGGTTTTCATCATCAACAAATATCACAATCGACACTACATTTAACCGA TCTCGTTCGTTCCTTTCACATCCCTACTTCAATCAATCAAAGATCTCCATGGATCCTCCTCCTTCTACATTCCACCGTCG CTGTTCCACCTTCATCATCATCATTTTCATCACAGGTAAGTAACAAACAACAATGCTGCAAATTCATTCCTTCTTAATCA ACATCTTATACCGTAAATCTGAAACCGGAACTGAAAAACGGCGTCGTTTCCGTGCAGCTGCAGGATTTGTAACTAGGACA GAGTCAATCGGAATCAACTACGGTCAAATCGCCAACAACCTCCCCTCACCGGAGAAGGTGGTTTCGCTGGTGAAATGCAT CGGCGCCACCAAGGTCAAGCTCTACGACGCCGATCCGCGCGTGCTCACGGCGTTCGCCGGCACCGGAGTGGAGTTCATGG TTGGCCTCGGCAACGAGTTTCTCTCCAAGATGAAGGACCCAAAGCAAGCACAGGCATGGGTGAAATCCAACATCCAACCT TACCTCCCAGCCACTAAAATCACCTCCATCTTCGTCGGCAACGAGGTCCTCACCTTCAACGACACCTCCCTCACCTCCAA CCTCCTCCCCGCAATGCAGGGCGTTCACACCGCGCTCGTCAATCTCGGCCTCGACAAGCAAATAACCGTCACAACAACTC ACTCCTTAGCTGTTTTAGAAACCTCCTACCCTCCTTCCTCCGGAGCATTCCGTTCGGACCTCGCTCCGTGTTTAGCACAG ATCCTGAGTTTCCAGGTTACTAGTAGTATCTCCTAAGTTAGTTACATGATTTATTGTTAGTTCTATTTGATGCACTAAAA TGTTTTTCCGACGGTTCAGGTTAAGACCGGGTCACCGTTCCTCATCAACGCGTACCCATACTTTGCTTACAAGGCGAATC CGAAGCAGGTTCCGTTGGACTATGTTCTATTTCAGCCGAATCAGGGGACAGTGGATCCCGGCACTGGACTTCACTACGAC AACATGCTGTTCGCGCAGATCGACGCGGTTTACGCGGCGCTTAGCCGGTTGGGGTGCGCGAAGGTGCCGGTGCACATCTC CGAGACGGGGTGGCCATCGAAAGGGGACGACGACGAGGCCGGCGCGACGGTTGAGAACGCAAAGAGGTACAACGGGAACG TGATCAAGATGAGCAGTAAGAAGGGGACGCCGTTGAAGCCTGATGCTGATTTGAATATTTACGTTTTTGCCCTCTTCAAT GAGAACCAAAAACCAGGACCTGCCTCGGAAAGGAACTATGGGCTCTTTAAGCCTGATGGTACCCTTGCTTATTCACTTGG TTTATCTCCGTCTTCTTCTTCTTCGCCTTCTCCTTCAACCAACGCCACCACCGGTGGTGGCGGTGGTGGTCGCGCACCGC CGCTCCCACCACCCACCTCCTCCTCCGGTTACTTGTCCATTTCTTCAGCTGCATCCTCACTGGTTAGTGTTAGTTACTAT CACTGACACTGCAATTCCCAATTTTTATTTATTTATTATTGTTAATTATTAGATTTGAGTTTAGGTTCTGTCAGGATTGT ATTTATCTTCTAGATTATACTATATTTTAGTGCAGCTAGCTGTGAAATCAGATTGTTTGTCTCTTTCAATTAATTAACAC TTCCCTAAAGGAGTGGGGTGCATCTAATAATGAAACTTGGGAGTGTTGGTTTCACTTTGGGAAAATGTTTCTTTTTTTCA CCTTTAACCATTAGCAGAAAAATGTAGGATTCCATTTCCATGTAAGGGTGTTACTTCACAAATTAAAGATGTCTATCATT TTTTCCTGCATTTGAATGTGTCATCAATTTTGTAGAGTTTTATCTAAATTTATAGCTTATATCCTTGAAGGGGTTGAAAT TGTTTATGATTGTTTTTTGGTTATAATACTTCAGGAGAGATACTGTTTACTTGGGCCTTGCTTATCCTTTCTGGTGCTGT TGCTGGTGGAGCTGATGATTTTGAGGTTTTGAGGAATTTTCAATGTAGAATCTAGAGAAGACATCATGGGTTGTAGTGGC TTGGCAATGGGAGAGAAGAGAAGAAGAGTAAAGGCAGAATGAGAAAGGAGTAAAGGTAATAAAACCCACAACAGAAGCTA CGTTAGTATATTATTTATTTATTTTTCACTTTGCTTGTGTGTTGCTATTGGAATTATTATCACCCTGGCCACAAAGTGCA TCTCCAACGTCTCTATTGTCCCCCACTCCTTTTTAGAAAATGCCTTAGCTTGTTACGTTTTGGATGCAAGCCAGCTTTAA CTGGGTTCATCCAACGGTAACACTTTCTCTCATGGCTTGCCCATTGCCAAGACTATTCTTTTCTTTCAACATTGAAAATG TTATTTGCACAAAAAGAATTAAAATAAAAAAATTTAAAGGTGTAACATTAAAAAACTTGTGTAACATTTTTCGAATCCAT AAGTATGGACATCTCTAAATCACACATGTTAAAATGTTACTATGTCACTTAGACATGAGTGATATTAGCTCATTTTTACT GAGGATAATTTTGACAATTCCTTATTTACTCATGGTAACAAGTTTTATATCTAATACACAATTGAAAGAATCTAGTACTA GAGCGCTTTGTCGCTAATAATGTTCATACTCATATACTTAACTCGAGCATGATGGGAGTATTTTGGTTGAATAAGAAAAA GAGAATCTAGTACCACCACTAGTGTGAAAGAGTAACATGTGAGAAGGGTATTATTGATTAGGAAACTGGCAGCATCACAT ACTTTTGTTGGCTGGCTGGCACTTGTTCCTTGGCCACAAAGGGAAAGTTAATCTTTTGGTCTGTGTTCTTTTGATTTTTG CAGGGAGTATGCACTATGCATTGCATTCACTGTCTTTATTTTATTGTCGCTTGCTGGTCTGTGAAGGAAAAGCTAGTTTG TCGTGGACTTCAATTGAGAAGAGCCTTGCCCCACCCAATCAATCTATTATGTATTAATATTAACAGAAATAGATAAATTT ATTGGTTTGGTTCTCTATTGAGATATTCTTTCATCATGTGCTACTCTCACATTTTTAGTATTCAATTATTATCCCATATT CAATTACCAAGCCGTATCATAATGCCCAATCTATCACACACGTAAGCCTTATTACTAGTATCATTTTCAAAACAAATAAA CACGTGTCTGAAACAATTATCCTTAGCTTTAGGACACTCTGCATCTGATTAATTTGATCATTTACAACAAATTATTGTTA TAAAAAGATCTCACGGGATCTCAGAAGGTTAAAAAAAAGGACAACACAACCATTGAGTAGATACTGATGTTTGTAGGAGA GCAAAACCATGGAGCTGAAGGTGGAGCGAGTCTATCCCTAACCGGCTTCCCGTCCTTCCTAAATGAATCATTCTATCATC CCTGTA
CDS sequence (LotjaGi5g1v0201000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTCCTCCTTCTACATTCCACCGTCGCTGTTCCACCTTCATCATCATCATTTTCATCACAGCTGCAGGATTTGT AACTAGGACAGAGTCAATCGGAATCAACTACGGTCAAATCGCCAACAACCTCCCCTCACCGGAGAAGGTGGTTTCGCTGG TGAAATGCATCGGCGCCACCAAGGTCAAGCTCTACGACGCCGATCCGCGCGTGCTCACGGCGTTCGCCGGCACCGGAGTG GAGTTCATGGTTGGCCTCGGCAACGAGTTTCTCTCCAAGATGAAGGACCCAAAGCAAGCACAGGCATGGGTGAAATCCAA CATCCAACCTTACCTCCCAGCCACTAAAATCACCTCCATCTTCGTCGGCAACGAGGTCCTCACCTTCAACGACACCTCCC TCACCTCCAACCTCCTCCCCGCAATGCAGGGCGTTCACACCGCGCTCGTCAATCTCGGCCTCGACAAGCAAATAACCGTC ACAACAACTCACTCCTTAGCTGTTTTAGAAACCTCCTACCCTCCTTCCTCCGGAGCATTCCGTTCGGACCTCGCTCCGTG TTTAGCACAGATCCTGAGTTTCCAGGTTAAGACCGGGTCACCGTTCCTCATCAACGCGTACCCATACTTTGCTTACAAGG CGAATCCGAAGCAGGTTCCGTTGGACTATGTTCTATTTCAGCCGAATCAGGGGACAGTGGATCCCGGCACTGGACTTCAC TACGACAACATGCTGTTCGCGCAGATCGACGCGGTTTACGCGGCGCTTAGCCGGTTGGGGTGCGCGAAGGTGCCGGTGCA CATCTCCGAGACGGGGTGGCCATCGAAAGGGGACGACGACGAGGCCGGCGCGACGGTTGAGAACGCAAAGAGGTACAACG GGAACGTGATCAAGATGAGCAGTAAGAAGGGGACGCCGTTGAAGCCTGATGCTGATTTGAATATTTACGTTTTTGCCCTC TTCAATGAGAACCAAAAACCAGGACCTGCCTCGGAAAGGAACTATGGGCTCTTTAAGCCTGATGGTACCCTTGCTTATTC ACTTGGTTTATCTCCGTCTTCTTCTTCTTCGCCTTCTCCTTCAACCAACGCCACCACCGGTGGTGGCGGTGGTGGTCGCG CACCGCCGCTCCCACCACCCACCTCCTCCTCCGGTTACTTGTCCATTTCTTCAGCTGCATCCTCACTGGAGAGATACTGT TTACTTGGGCCTTGCTTATCCTTTCTGGTGCTGTTGCTGGTGGAGCTGATGATTTTGAGGTTTTGA
Protein sequence (LotjaGi5g1v0201000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPPPSTFHRRCSTFIIIIFITAAGFVTRTESIGINYGQIANNLPSPEKVVSLVKCIGATKVKLYDADPRVLTAFAGTGV EFMVGLGNEFLSKMKDPKQAQAWVKSNIQPYLPATKITSIFVGNEVLTFNDTSLTSNLLPAMQGVHTALVNLGLDKQITV TTTHSLAVLETSYPPSSGAFRSDLAPCLAQILSFQVKTGSPFLINAYPYFAYKANPKQVPLDYVLFQPNQGTVDPGTGLH YDNMLFAQIDAVYAALSRLGCAKVPVHISETGWPSKGDDDEAGATVENAKRYNGNVIKMSSKKGTPLKPDADLNIYVFAL FNENQKPGPASERNYGLFKPDGTLAYSLGLSPSSSSSPSPSTNATTGGGGGGRAPPLPPPTSSSGYLSISSAASSLERYC LLGPCLSFLVLLLVELMILRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 28 | 17 | - | – | |
| PANTHER | 18 | 399 | 382 | 5.3E-202 | – | |
| PANTHER | 18 | 399 | 382 | 5.3E-202 | – | |
| Phobius | 29 | 400 | 372 | - | – | |
| Gene3D | 31 | 356 | 326 | 1.3E-125 | – | |
| Pfam | 33 | 348 | 316 | 1.2E-89 | ||
| SUPERFAMILY | 33 | 348 | 316 | 1.65E-93 | ||
| MobiDBLite | 349 | 368 | 20 | - | – | |
| MobiDBLite | 349 | 383 | 35 | - | – | |
| Phobius | 401 | 419 | 19 | - | – | |
| Phobius | 420 | 421 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0201000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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