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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0203200 |
| Transcript ID | LotjaGi5g1v0203200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT2G02250.1 phloem protein 2-B2; Swiss-Prot: sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2; TrEMBL-Plants: tr|I3T458|I3T458_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0203200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50369321..50371975) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTAAGTTGAAGAGGTGGAACATGAAACTGATGAAAGATGGATGATAATGATAAATAAGATGGAAAGGTTGATTGAC ACGACGTGGACACATGTAGGATTCTAAAAAGATAAAGATCCTTTAAAAACCATCTTTTTCTACATACAACTTTTATTTTA TACCACCAACACCAAATTGCATCACAGAAAATCTGATACTCTATACTAAGCTATCCATCCAAACTTAACCCCTAAGCTTT CAATTTCATTTCACATCCCACACTATAAATACACACTCACCCCCACCGTTTTCTCAAACTCGGCACCATGGTGGTGTTTG AGAACCTTCCTGAAGGTTGCATCGCTAACATTCTCTCCCTCACTTCTCCTCTCGATGTCGGCAGATTGGCTCTGGTTTCC TCCGCTTTCAGATCCGCCGCTGATTCCGACGCCGTTTGGGATCGGTTTTTGCCCGATGATTTCAACTCCATCATTTCTCA TTCTTCCTCCACCGCCGCCGCCGATTCCAGCTCCTCTTTCAAATCGAAGAAGGACCTCTACCTCTCGCTCTCGCACAATC CCCTCATCATCGGCGACGGGAAGAAGGTAATTTAATTTTGGTAGTTTTTGTTGATTTGAATTTTATTGAATTTCTGATTC TGTATGAGAAATCTGATGGATGTTCTGTTCTGATCGTTGAAATTGGTGTTGAATTTTGCAGAGTTTTCAGCTGGTGAATG GGAAGAAATGCTACATGCTATCAGCTAGGGCTCTGTCCATTGTATGGGGAGATACTCCTAGGTATTGGAGGTGGATTTCT CTTCCAGAGGCTAGGTAATTCATGCCAACAACAATGCAACTACTTTTAATTGATTATTGTTTATCGATCGATCGTGTTAG AAATATAATCATTCATGTGCGTCTTAAGCTTTAGACCTAAAAACTTTTTGGGATAATTGATTCTCGTTATTTAAAATAGT TAAAATCAGCGGATGTAGATGAGTATGTGCATTGTCTACCCTCGTATGGTGGGTTAGAAATATAATCATTCATGTGTCTG CTAAAGTTTTTGAGATAATTGGTTATTTGGTCGTATTTGTAGCATGTTTGGATTGGTTTTAGTTTTCTCAGAATCAATTC TAACATAAGTGTTTTTCTAAAATTGATTTTGGATGGTATCATGGTAACTGAAAATTGAATTGAAATGCAGGTTCTCTGAG GTGGCTGAACTTGTGAGCGTGTGTTGGTTGGAAATCCGGGGCTGGATCAACACTAAGATGCTGTCACCAGAGACTATGTA CGGGGCGTACCTTGTGTTTAAGCCGAGTGGTGGAGCCTATGGGTTTGAGTTCCAGTCAGTTGAAGTGTCTGTTGGATTTG CTGGAGGTAATGCGCAGAGGCGCGATGTGTACTTCGATGCTGAAAGGGAACGAAGGCTGAGATACCAGATTGTTGCTGGC CGTGCCCCTGCCGGGATTTTCAACAGATTCACCAGAGTCGCCATGGAACCGCCCCCGCCGCCACCACCACAAGTGATTGT TGATGAACGTGAGTATCCAAAGGAGAGGGCAGATGGGTGGTTGGAGATGGAATTGGGAGAGTTCTTTTGTGAAGGAGGAG AGGACAGGGAGGTGGAGATGGCTGTTTGTGAGGTCAAGGGTGGTGACTGGAAGGGTGGCCTTGTTGTTCAAGGAATCGAA ATTAGGCCTAAACCATAAAAGGGTAAACCTGTTGCTCCTGTGTTCAGGTGGGGAAGTCCTGAGAATGTCAGTTTATGTCA TCTCTTTTGCTGAAATTTGAGCTAAACCATGACTAAACCAAAATTGCTGTTATCTCTTTTGTTAGGATCTTATCCTATAT GTTGGTTTATGTCCTGATTACTATGTTTCTTTCGGAAAAAAAACATTCATACCTTAATTTCACCTCAAGATGATAGGAAT AGAAGAGAGAAGTGAGAAAGATGGTGGTGATATAAGAATTATGTGAATGATAGGAAGAAAAAATTAGCATAATAGTTGGT TTCTTTCGGATGTCATAGCTCATAGGAGTCGATGCAGGGCACATGAGAACCTCTGTCTACAGCTCTCCCTAGAAATCGAT GGGAGTGTTGTTTTTGGTTTTTACTTCTATGTACCTTCAATTGTCCTCTGGGCACAATTTTTTACTTAATTATGGAATAT TTAATTAATGTTATAATTGTTATTTTAATTATCTAGCGGCAATTAGAGCATCTCCAATGCAAGGTTCTTAGTTCTTATTT TAGAGTTAAGAACTAAGAACTTTACTATTGGATGCGCTGACATGAACTCCTTAGTTCTTAAAAAATAAGAACTCACTTCT TATATAAGAAGTTTTGCTTTTTGAGTTCTTAGTTTAAAATATTAATTATTTCTCTCTCATCCAAATTACTTTATTACTTT ATGAGTTTTGTTATATTACTTTATGAAAATAAAAAGTATAAATAATGTGGTTGGTGGGACCAAATAAATAGTGGTAAGAA CTAAGAACTAAGAACTCATGGTTGGAGCAAAATTGCTTGAGAGTTGCTTAAACACATGTGACAATACAGACTCACATGAA TAGTGCTAAGAACTAAGAAATAAGAACTAGCATTGGAGATGCTCTTAGAAGTTATCTGTCCAATTTAAGGTACATGTTTC TATGCTCTTACATTT
CDS sequence (LotjaGi5g1v0203200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTGTTTGAGAACCTTCCTGAAGGTTGCATCGCTAACATTCTCTCCCTCACTTCTCCTCTCGATGTCGGCAGATT GGCTCTGGTTTCCTCCGCTTTCAGATCCGCCGCTGATTCCGACGCCGTTTGGGATCGGTTTTTGCCCGATGATTTCAACT CCATCATTTCTCATTCTTCCTCCACCGCCGCCGCCGATTCCAGCTCCTCTTTCAAATCGAAGAAGGACCTCTACCTCTCG CTCTCGCACAATCCCCTCATCATCGGCGACGGGAAGAAGAGTTTTCAGCTGGTGAATGGGAAGAAATGCTACATGCTATC AGCTAGGGCTCTGTCCATTGTATGGGGAGATACTCCTAGGTATTGGAGGTGGATTTCTCTTCCAGAGGCTAGGTTCTCTG AGGTGGCTGAACTTGTGAGCGTGTGTTGGTTGGAAATCCGGGGCTGGATCAACACTAAGATGCTGTCACCAGAGACTATG TACGGGGCGTACCTTGTGTTTAAGCCGAGTGGTGGAGCCTATGGGTTTGAGTTCCAGTCAGTTGAAGTGTCTGTTGGATT TGCTGGAGGTAATGCGCAGAGGCGCGATGTGTACTTCGATGCTGAAAGGGAACGAAGGCTGAGATACCAGATTGTTGCTG GCCGTGCCCCTGCCGGGATTTTCAACAGATTCACCAGAGTCGCCATGGAACCGCCCCCGCCGCCACCACCACAAGTGATT GTTGATGAACGTGAGTATCCAAAGGAGAGGGCAGATGGGTGGTTGGAGATGGAATTGGGAGAGTTCTTTTGTGAAGGAGG AGAGGACAGGGAGGTGGAGATGGCTGTTTGTGAGGTCAAGGGTGGTGACTGGAAGGGTGGCCTTGTTGTTCAAGGAATCG AAATTAGGCCTAAACCATAA
Protein sequence (LotjaGi5g1v0203200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVFENLPEGCIANILSLTSPLDVGRLALVSSAFRSAADSDAVWDRFLPDDFNSIISHSSSTAAADSSSSFKSKKDLYLS LSHNPLIIGDGKKSFQLVNGKKCYMLSARALSIVWGDTPRYWRWISLPEARFSEVAELVSVCWLEIRGWINTKMLSPETM YGAYLVFKPSGGAYGFEFQSVEVSVGFAGGNAQRRDVYFDAERERRLRYQIVAGRAPAGIFNRFTRVAMEPPPPPPPQVI VDEREYPKERADGWLEMELGEFFCEGGEDREVEMAVCEVKGGDWKGGLVVQGIEIRPKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 47 | 47 | 10.213 | ||
| Gene3D | 2 | 84 | 83 | 6.7E-6 | – | |
| PANTHER | 4 | 298 | 295 | 1.8E-102 | – | |
| PANTHER | 4 | 298 | 295 | 1.8E-102 | – | |
| Pfam | 4 | 47 | 44 | 3.5E-6 | ||
| SUPERFAMILY | 4 | 80 | 77 | 1.27E-11 | ||
| SMART | 7 | 47 | 41 | 0.0019 | ||
| Pfam | 101 | 297 | 197 | 1.5E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0203200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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