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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0203900 |
| Transcript ID | LotjaGi5g1v0203900.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein kinase; TAIR: AT2G40730.1 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|Q96KG9|SCYL1_HUMAN N-terminal kinase-like protein; TrEMBL-Plants: tr|A0A072UDD3|A0A072UDD3_MEDTR Serine/Threonine kinase family protein; Found in the gene: LotjaGi5g1v0203900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50435172..50436413) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCAAATTCCTGAAAGAAGTGGTCGGTGGATCTGGAACCGGCGTCAAGGATCTCCCTTACACCATTGGCGAACCTTA CCCTTCTGCTTGGGGCTCTTGGCTTCATCACCGTGGCACCTCCAAGGTAACAACAACAACCACCATTCTTCAATTTCTAC TGTAATTCTTCCCAAATTCCCATGTTGCCATGTGTTAGTTTTGTTCAATTTCAATACTTATTATTGCCAATTGATTCAAT ATGGAGATTAAGAAATTGGGGTTCGCTCATTTGGGCTTGATTTTTGGTTTCAGGATGATGGGTCACCGGTGTCGATTTTT TCTCTATCTGGGAGCAATGCTCAGGATGGGCATTTAGCTGCGGGTCGTAACGGTGTTAAGCGTCTGCGAACTGTAAGCTG AGCTTGTGATTCACCTCACCTGATTGTTGCTGCTTTTGTTTTGTAGTGGCGAAAATTCGGTACCTTTTTTTGAGTGGTGC TCTTTTTTCAGGTTAGGCATCCGAATATTTTGTCATTTCTTCATAGTACCGAGATTGAGACTCACGATGGTGGTTCTTTG AAGGTCACGATTTATATTGTGACTGAGCCTGTGATGCCGCTGTCTGATAAGATTAAGGAGTTAGGTCTTGAAGGGACTCA AAGGTATTGATAGATTGATGCTGCTGAACTCAATTACTTCCTTTTATTGCATATAATTTGATGTTTAGTGGGTTTGTTTC CTATGAGGCTAAGGTTGTAACTTGTGAGCAATATTATAAGTAAATCGCAGTGCACGAGTGCATGGATTTTTATTTACGGT TTGGAGTTGGGTTAGTTATGTTCACTCGTTATTTTATTCTTTATTGGGATTGTAGGGATGAATATTATGCTTGGGGACTG CATCAAATCGCGAAAGCTGTGAGCTTCTTAAACAATGATTGTAAACTTGTGAGTATTCGTGAGCCAAATATGGTTTTTTC TGCACGTAAGTTGCTTTTTCGGTTTTGTTTGACAAGCTTTGTCTGTTGCAGGTTCACGGTAATGTTTGCTTGGATAGTGT TGTCGTCACGCAAACTTTGGACTGGAAGCTCCATGCGTTTGATGTTCTGTCAGAGTTTGATGGGAGTAATGATGGTTCCG CTGGGCAGATGCTGGTAATTTAGTGTTTGGTTGCGATACCTAGTTTTGTTGTTAGCTTTAGCATTTCACTTTGAAATTTA AATTTTCCTTTTTCTTGAAGTTCAGATATTAACAACTCATAG
CDS sequence (LotjaGi5g1v0203900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAATTCCTGAAAGAAGTGGTCGGTGGATCTGGAACCGGCGTCAAGGATCTCCCTTACACCATTGGCGAACCTTA CCCTTCTGCTTGGGGCTCTTGGCTTCATCACCGTGGCACCTCCAAGGATGATGGGTCACCGGTGTCGATTTTTTCTCTAT CTGGGAGCAATGCTCAGGATGGGCATTTAGCTGCGGGTCGTAACGGTGTTAAGCGTCTGCGAACTGTTAGGCATCCGAAT ATTTTGTCATTTCTTCATAGTACCGAGATTGAGACTCACGATGGTGGTTCTTTGAAGGTCACGATTTATATTGTGACTGA GCCTGTGATGCCGCTGTCTGATAAGATTAAGGAGTTAGGTCTTGAAGGGACTCAAAGGGATGAATATTATGCTTGGGGAC TGCATCAAATCGCGAAAGCTGTGAGCTTCTTAAACAATGATTGTAAACTTGTGAGTATTCGTGAGCCAAATATGGTTTTT TCTGCACATATTAACAACTCATAG
Protein sequence (LotjaGi5g1v0203900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKFLKEVVGGSGTGVKDLPYTIGEPYPSAWGSWLHHRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPN ILSFLHSTEIETHDGGSLKVTIYIVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVSIREPNMVF SAHINNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 2.1E-80 | – | |
| PANTHER | 1 | 152 | 152 | 2.1E-80 | – | |
| Gene3D | 12 | 107 | 96 | 2.6E-28 | – | |
| SUPERFAMILY | 38 | 146 | 109 | 1.37E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0203900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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