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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0204600 |
| Transcript ID | LotjaGi5g1v0204600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10; TrEMBL-Plants: tr|A0A0B2PZN8|A0A0B2PZN8_GLYSO F-box protein PP2-B10; Found in the gene: LotjaGi5g1v0204600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50616552..50620814) extracted from Lotus japonicus Gifu genome v1.2.
GTCATTGAATTTTTTTTCATCAAATTCGATCCCTACAAATATAAATGATATCACGGCTTCAATTGAATGAGCGTGCACAC TTTGCTAAAGCCTCTCCAAAGGCATAATTCAGTTGGGAGAGAAGAAGTGAGAAAAAGAATGGAGCATTTGCCAGAAGGAT GCATCGCCGCCATACTCTGCCGCACCACTCCGGCGGACGCCGCCAGACTCGCCGCCGTTTCCAAGATCTTCCGCTCCGCC GCCGACTCCAACGCCGTCTGGGATCGTTTTCTCCCTTCCGATTACCATTCCATCGTTTCCCAGTCTCCTTCTCTTGCCAA CGCTTCTTCTAAGAAAGCGCTCTACCTCGCTCTTTCCGATCACCCTATCATCATCGATCAGGGTAAAAAGGTATGTACTC TCATCATCAATCTCAATTCTCTGATCATGATTAATTTCTCAGATTAGGGTTTTTCGATCGGAGTGTTGATTAGGAATTGG GTGTTCTCTGATTAATGTCTGAAATGCATGCAGAGCTTTGAATTGAACAGGAAGAGTGGGAAGAAGTGCTACATGCTTGG TTCCAGAGCTCTCACCATTGTTTGGGGTGACACTGAGGAGTATTGGAGTTGGGAAACCCTCCCAGAGTCAAGGTCAGTTT TTTTGGGTGCATTGTAATTGCTTTATGACTATCACCTAGGACTGTAGTTTAATCTAAAGAAATGGGCATGTTTTAGTTGA TGAGTACAACATTCTGTTAAGATAAATGTTATATGATGGGGTAGTAAGGGTGAGTGTTTTCTACTTAGTAGTGGTGTGGT TTGGTTTAAGACATTTTGAACTTGTAATATCAATTGTATACTGTAATGTGCTCCTTAACCACCAATGTTAGACTTGCTCT GTCCGAGCTTGAGCTTCTACTCAAGCGGGTGTGTGAGCTTGTGTTCTTTCTTTCTATCTGAACTTGAGTTTTAGAGGTCC ATGACTTATCATGTTAGTTGATAGTTTTATTGTCATTGAGCCCATTTTCTGTTGGTTGATAGTTGACTATTTGAGCTCTA ATACCACTTGTTGAACTTGGAAGCGTGACCTCAAATATTGTTGTTTGTTCAAGTGAGTGTATTGGACTTAGTTAGAGTGT GGTTCGGTCTAAAAGGCCTTTAGATATTTTGAACTTGCAACACACTCACTTTTATACTATTTACTCACTGATGTGGGAAT TTTATGGTTTAGCCAGATCACACTCAAGCCTCCACATTTTTTCTTTCCTTTTCTTTCACAAATCCCTCCATTTTCCCACT TGTTTCTTTGTTTGTTCAGCTTTTTCATTTTTAATTCCTTAATTCAACTACCTCTTGAAAACTTGGAGTATGCTAAAGTC TGGCAATAGTTGATGCTGATGTCATTTCCACCTTGCCCCTTAAGTGTACAAACTTAGGAGTGTCCTCTCATGCCCTCTAT AATTTACATGGTTTGTGTTACCCCTTTCTCCATATTCACCTCAAAAAGCTTCTGCTCTGATTTTCTCTTTGTCAAGGTTC CTATTTATGCTGCAATTTCCACCTTTCTTCACAGCTCTTCCAGCTATGCTTCCAAGCCCGTGTTTGTCACACCGCAACAC CTACTTATGCCTTTAATGTTGGAGCTATGATACCATTTGTAACATTGGTTTTGAAATGAAAGAGAAGATACTGATTTTAT TCAAGAATCAATGGTTCAGTACAAGACCTAATGTAGTTGGAAACTGAACAAGAATGTGCACACACTTAGAGCAATTCGAG AGGCCTTGTCACTCTCCAACATTTTTCACTTTCTGTCAAAGACCTGCAATTCTTGTCTATCCACTAGTACAAATGCTAAC TCCCTGAAATATCTTTAATAACCCTCCTGCATAACTTTGTTATTTCTCCAACTCCATCCCATGAGAGGATGAAGCATTAA GAAATTGAGTGTCATTTTTGTGATGGAAAAGATGAATGCTTGTGTACAGAGCTCTTTTTTGAATTGAAGAGTGGTTGAAG TAATCAGTTTTGATACATACACACTCACTCACATTCTCCAGTCCTATTTCCACTCATTTTATCTTCCTATCTCTGTCTTC TTTACCTATTACATCAACCATCATATTGCTCACTTTTCTCTCTTCTATTCTTATATCTCTGTGTAGGTGCGAGGTGGAAA TGGAGGTGAAGAGATTATTTTCCTAAAGTAATTTTAAAGTAGTGGAATAGTTGGAATAGTTTTGATGGATAGAGGTCTAG GGAGTTAGAACTATTAAACAAGGAATGACAAGTTTATTGCTTTAATATATTGCTGGATTAGCACCTCAAATTGGTGTTCT TGGAGAGCACACTCAAATGGTGGTGCTCATTGCCTATCTATAGGCTTTTGCATTACATCCTAGAAAACTCTAGTAACATC CATTCTAGAATTATCAAGAAAATCCCAATTTTTAAACACCCCAACAGCAAGATGCCCCACATACACTATTTTTCTCTCTA TTTCTTTCTTTCTCACCCATTCTCATTTGGGCGTAGAACTATCTAGAACTATCTAATTATCCAATGGGTTACAATATTTA TTGCTTTTTTCTAGGTCTTTGACTACTTTTTTCTTATTCTGCACATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGC GCCGTCGCGTCGCGGCCCTTCCCCGCGATTCTGAATCGATCGCTTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATC GCGGCCAAATCGCGTTCAAATCGCGTTCAATCGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAAGGAA AATCCCCAAATTGCCCTCAAAATTTCAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTATAAGTGAAA CGGTGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTTCTTCTTCTTCAACGCGTTTCTTCTTCTTCATACGCGTTTCC TCTGCAATCTCCGGTGTCGTTCCTTCAGCTCAGCCCCTTCGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGAC AAGCACCTTCCAGGCTCCGGCGACCACCACCCCTGTTTCTCTTGGGCCTTTGTTCTGTTCTGAGTTGCTCTGTTTTTTAT CTTCTATTCCTCTATTTTTCTTTCCTTTCTTTTCCTTCTTATTTATTATTCTGTTCTCAAAAATACTTCTCCAGTTCTTC TCCTCTAGTATTCCTCTCTTCTCTATCACTTCTTCATGTTATGAATTTGAATTTTGAAGTTATATTTATCACTTTTTAGT AATTATATGTATATATTAATTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCGCTATCCCGCT ATCCCACTTTTGGGGTCGGCCGCTACGCGCCGCGATCCGGGATTGACTACTATGATTCTGCATTTTTTCCCCCGTATCCT TATCTTTGCAACTTGTGCACAACTTTTGAACAGGTTTCCTGAAGTTGCTGTGCTTCAGGTTGTGTGGTGGCTTGAAATTC GTGGGAAGATAAACACCTTTTCCTTGTCTCCAAGCACTCTTTATGGAGCTTTTCTTGTTTTCAAGACTGAGCATGCCTAT GGATTTAATAATTGTCCTGTGGAGTTATCAGTCAGCATCATAGGTGGCCATAGCAGTACCAAAAATGTCTGTTTGGATTC AAGGATGGGTAGGCGGGGGGCGCACTTCAGAGTAGAGGGATTGCAACGTCCAGCTGTGAGAAGTGATGGGTGGTTGGAGA TTGAGATGGGAGAGTTCTCCAATTCAAGCCTAGAAGATGAAGAACTGCAGATGAGTGTTATCGAGATACAAGGTTATAGT TCGAAGAGCGGTCTCATTCTTGAAGGAATAGAAGTTAGGCCTAAGGAAGGCAATTAAGAAACCAAATTTATTTCATTGAA CTATGCATGGGTTTGCATCTTAGATGGCTTATACTGCTTGCAGATTTGAAGCTTCAAGTTGTGAACATACACTGTGATGT GTTCTTGTGCCAAACTGATAAAGTTTATGCATAAGCTATATTGCTCATCATAACTCTTATGACATGATGATGATGATGAT GTTTTTGTATCCCGGGATAATTTTTTGTTTTGGATATTAACCTCGGGTGAATGAACTTTGAATTAATCTAGAAGTATAAC AAGTATTTAAAATTAAATATAAACTAATTATTTTTACTTGTGCGACATGTACGGTGTTGATTGATTGAGAGTTTAGTGTT AGATAATGTTTGTAAATTGAATG
CDS sequence (LotjaGi5g1v0204600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGTGCACACTTTGCTAAAGCCTCTCCAAAGGCATAATTCAGTTGGGAGAGAAGAAGTGAGAAAAAGAATGGAGCA TTTGCCAGAAGGATGCATCGCCGCCATACTCTGCCGCACCACTCCGGCGGACGCCGCCAGACTCGCCGCCGTTTCCAAGA TCTTCCGCTCCGCCGCCGACTCCAACGCCGTCTGGGATCGTTTTCTCCCTTCCGATTACCATTCCATCGTTTCCCAGTCT CCTTCTCTTGCCAACGCTTCTTCTAAGAAAGCGCTCTACCTCGCTCTTTCCGATCACCCTATCATCATCGATCAGGGTAA AAAGAGCTTTGAATTGAACAGGAAGAGTGGGAAGAAGTGCTACATGCTTGGTTCCAGAGCTCTCACCATTGTTTGGGGTG ACACTGAGGAGTATTGGAGTTGGGAAACCCTCCCAGAGTCAAGGTTTCCTGAAGTTGCTGTGCTTCAGGTTGTGTGGTGG CTTGAAATTCGTGGGAAGATAAACACCTTTTCCTTGTCTCCAAGCACTCTTTATGGAGCTTTTCTTGTTTTCAAGACTGA GCATGCCTATGGATTTAATAATTGTCCTGTGGAGTTATCAGTCAGCATCATAGGTGGCCATAGCAGTACCAAAAATGTCT GTTTGGATTCAAGGATGGGTAGGCGGGGGGCGCACTTCAGAGTAGAGGGATTGCAACGTCCAGCTGTGAGAAGTGATGGG TGGTTGGAGATTGAGATGGGAGAGTTCTCCAATTCAAGCCTAGAAGATGAAGAACTGCAGATGAGTGTTATCGAGATACA AGGTTATAGTTCGAAGAGCGGTCTCATTCTTGAAGGAATAGAAGTTAGGCCTAAGGAAGGCAATTAA
Protein sequence (LotjaGi5g1v0204600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVHTLLKPLQRHNSVGREEVRKRMEHLPEGCIAAILCRTTPADAARLAAVSKIFRSAADSNAVWDRFLPSDYHSIVSQS PSLANASSKKALYLALSDHPIIIDQGKKSFELNRKSGKKCYMLGSRALTIVWGDTEEYWSWETLPESRFPEVAVLQVVWW LEIRGKINTFSLSPSTLYGAFLVFKTEHAYGFNNCPVELSVSIIGGHSSTKNVCLDSRMGRRGAHFRVEGLQRPAVRSDG WLEIEMGEFSNSSLEDEELQMSVIEIQGYSSKSGLILEGIEVRPKEGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 121 | 111 | 7.7E-6 | – | |
| ProSiteProfiles | 22 | 68 | 47 | 8.835 | ||
| PANTHER | 25 | 284 | 260 | 1.6E-111 | – | |
| PANTHER | 25 | 284 | 260 | 1.6E-111 | – | |
| SUPERFAMILY | 25 | 125 | 101 | 3.14E-12 | ||
| Pfam | 118 | 284 | 167 | 4.8E-54 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0204600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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