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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0204700 |
| Transcript ID | LotjaGi5g1v0204700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT2G02360.1 phloem protein 2-B10; Swiss-Prot: sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10; TrEMBL-Plants: tr|I3SGX8|I3SGX8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0204700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50622909..50626358) extracted from Lotus japonicus Gifu genome v1.2.
TACCTAGCATAAGTTCCACGTGGATTTTATATATCTAGTCATTTTTAAAAATTCCACATCATATTAAAACCTAAAATATA AAAACTCAAAATTAAAATCTAGAAATTAAAAAAATCCTCTTCCTCTTCCTTCTAGATTCGACCCTCTCCTCCTTCCTTTC TTCACCATCATCTTCCTTCAATTCCTGCAAAACCCTAGTCGTTCAGAACAGGTCATTCGCGGAAGAGGCACAATTAAGTG GTGTGAAGCTGATTGAATAAAAAAGAGACAGTGGTAGATCGAGGTCCAGTTGTTATTGCAGTGGTACCTGATTGAGGCGC ACATTGGTGAGTTTACATCATGGTGGGTTGATGGTGGTCGTGAAGGTACGAACCAGTGGTGACAGGGTTTGAGTTGATTT TCGTTTCTCCTTCATCTTCATCTGCTATGTTCTGGTTATGGTTTGGAGAGGGTTAGGGTTCTTGTACTGGTTTGGGGATG AAATGGCAGTGGTCCTAATTGGTATTGTGTCTAAGATGGTTCTGGAGTTGTGTCTGATGTAGAGCATGAAAGTTGTGTCT GGTGTTTGTGGCATGAAAGTTTACTAAGGTTATAAGGGTTCTAGAGTTGTGTTTAGTGTTTGTGGCATGAATCTTTGTTG TTGCACTTGACTTTGTAGATTTTGGAAGAACAAGGTGAATAAGATGAAGATATAGTTTTTTTTAGGCTTTTGAATTGTTG GGTTTAAGGATTTAAGTTATGGAGAAAGAGGAAGAAGGTGGAAGGTCCGGACTAAAATTGATTAATTTTTTTTCAAGGAA CTAAAATTTTGTGAAAAAGTCAACGGGGTCATCATCAGCTGACTAGGTTTGCTATTAGACTGTTGACCGGCTAAAATTGA GCAAAATTACTTAATTTGATTAAAACAAATTTTTTAAGAATTCAATTTGATGCGAAACTTTTTCAGAAACTCAATTTGAT TCTCTTTATAATTTCAAGTAATAAAATGTTATTTAAGCCTTTTATTTTTAAACTCAAATTGCATTGCTTCTTTGGTAACA CCGTCCAGAAAAATCCAAAGTGAAGACAAACCACAGAGACCGTAGAGAATGGAGTTACCAGAAGGATGCATCGCCGCCAT ACTCTGCCGCACTACTCCAGTGGACGCCGCAAGACTCGCCGTCGTTTCTAAGACCTTCTACTCCGCCGCCGATTCCGACG CTGTATGGAATCACTTTCTCCCTTCCGATTACCATTCCATCGTTTCCCAATCTCCTTCTCTTGCCAACGCTCCTTCCAAC AAAGCGCTCTACCTCGCTCTCTCCGATCGCCCTGTCATCATCGACCACGGTAAAAAGGTAGGAACCTATGTACTCTCATC ATCAATCTCAATTTTTATCTAATCATTTCTCAAATTAGGGATTTTCGATTCGCTAATCAATGTATGAAATGCATACAGAG CTTTCAATTGGATAGGAAGAGTGGGAAGAAGTGTTACATGCTTGGTGCCAGAGCTCTCTCCATTATTTGGGGTGACGATG AACGTTACTGGCAGTGGATCAACCTCCCAGAATCCAGGTCAACACTTCAGTTTTTGTGTTTGCTTCGTTTTATTCTAGTT TTTGTTGAGATTGCATTGTAATTGTGCTTGTTTTTGTTCTTGCTCATGTGGTGGAATCAAGCCTTTAATCCTTTACTTGA TTAGTCTCTATCTGGGTATGTCATGTTCTTTTTATATATATGTGCTTGAATGATTCATTTCCCATCTTTATGGTAGACTA CTGTTGATGGATACATGGCAAGGATGAAAGCCTGAAGAATTTGACTGTCATTTTTGCTCTCTAGTAGTTTTTGTAGCTTA CTAACTGACCTGTCAATAGGTTTGTTATGATTGTACAGCTTGTATTGCTGCTGCTAGAGCTTCTAGTTTGTTGTTAATGA GGCAGCAATGTTAGTTATCATTGGCGGGGACTGAACCAGAAAAATGGGTAAGGGGGGGTGAAAATTTAACATACTAAGGC AGATCATGAATGACTGAATGAAAAAAACTAAAAATTTTGGGGAGTGACCGACCCTTTTTTAGATTACCTAGGTCGTCCCT GGACATTGGCATAGATTACTGTTTGTATCACTACACCTATACAAATACTCATTCTGCAAATACTCAGTAGGAATCACACT GCATTTTTTCTCAATTCCTTTATTCTCATCTTTTCAACTTGTGCACAACTTTTGAGCAGGTTTCCTGAAGTTGCTGAGCT CCGGGATGTGTGCTGGCTTGAAATTCGTGGGATGATGAACACCATTGCCCTGTCCCCAAACACTGAGTATGTGGCTTTTC TTGTGTTCAATATGATTGATTCCCACGGATTTCATAGCCGTCCAGTGGAGTTATCAGTCAGTATCATAGGTGGCCATAGC AGTAACAAATATGTCTGTTTGGATCCAAACTTGAATGAAAGGCCGCACATTAGAATACAGGGATTGCAACGTCCAAGTGT GAGAAGCGATGGGTAGTTGGAGATTGAGATGGGGGAGTTCTTCAATTCAGGCCTAGAAGATGAAGAACTGCAGTTGAGCA TTCTCGAGGTAAATAGCCGTAACTGGAAGAGTGGTCTCCATCTTGAAGGAATAGAAGTTAGGCCTAGGGAAGTCAATTGA GCAACCAAATTTGTTTAACTGAACTCTGCATGAATCTTGCGTCTTGAGTGGCATCTATGATCTATTGCTTGCAGATTTGA AACTTCAACCTTTGGACATACCTTGTGATGTGTTCTTGTGCCAAACTATTGCACTCTTTGTGATGTATTTTATATGCCAT AAGCCATATTTCTTATGATTACTCTTATGACATTATATTTCTGTATCCTGGTATTTTGGATATTAGCCTTTGGTGGATGA ACTTCCAACTATATATTATAATGCACTATGAATTTGCCGCCATTTGTTGTGGAACTCTCATGACTCATTCATGAGTGTAG TACCTTCTTTTTTGGTCAGCATGATCGGTAGTTATTTGACCTTCTATCTCGATGGTAAGGTAAACGGGGGAGAACGTTAT TAAGACACGCCTAACATTACATTACATTTTCCTCTCTACCTCTTTCTTCATATTACATTTTCCTCTTCCTCTGACACTGG AGTTAATACTTTGAACTTGTTCCTGGGAAAAAATGACCGGATCTTCTTCCAAATCAATATTTTTTTTAGCTGTAGCACAA AATTCCCCCTAACAGAGTGGAGGTGATGCCATTAGTGATGCTTGGAAGAAGGTGTATTGTCTCTCACGGCTTTACATACT AACTCAACATTTCTTTAGGACCCAAAACAGGAATTGTAATAATTTTTCTGTGGAATCTCAGGTGAAAATCATGATGTGAA TTTTTTTCTTACGTTTCTTTAATATTTCTTGTGAGATGAGAAATTTTGCATGAGTGCTGGTGAACTTTTAATGAATTGAA GAGAAAACTC
CDS sequence (LotjaGi5g1v0204700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTACCAGAAGGATGCATCGCCGCCATACTCTGCCGCACTACTCCAGTGGACGCCGCAAGACTCGCCGTCGTTTC TAAGACCTTCTACTCCGCCGCCGATTCCGACGCTGTATGGAATCACTTTCTCCCTTCCGATTACCATTCCATCGTTTCCC AATCTCCTTCTCTTGCCAACGCTCCTTCCAACAAAGCGCTCTACCTCGCTCTCTCCGATCGCCCTGTCATCATCGACCAC GGTAAAAAGAGCTTTCAATTGGATAGGAAGAGTGGGAAGAAGTGTTACATGCTTGGTGCCAGAGCTCTCTCCATTATTTG GGGTGACGATGAACGTTACTGGCAGTGGATCAACCTCCCAGAATCCAGGTTTCCTGAAGTTGCTGAGCTCCGGGATGTGT GCTGGCTTGAAATTCGTGGGATGATGAACACCATTGCCCTGTCCCCAAACACTGAGTATGTGGCTTTTCTTGTGTTCAAT ATGATTGATTCCCACGGATTTCATAGCCGTCCAGTGGAGTTATCAGTCAGTATCATAGGTGGCCATAGCAGTAACAAATA TGTCTGTTTGGATCCAAACTTGAATGAAAGGCCGCACATTAGAATACAGGGATTGCAACGTCCAAGTGTGAGAAGCGATG GGTAG
Protein sequence (LotjaGi5g1v0204700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPEGCIAAILCRTTPVDAARLAVVSKTFYSAADSDAVWNHFLPSDYHSIVSQSPSLANAPSNKALYLALSDRPVIIDH GKKSFQLDRKSGKKCYMLGARALSIIWGDDERYWQWINLPESRFPEVAELRDVCWLEIRGMMNTIALSPNTEYVAFLVFN MIDSHGFHSRPVELSVSIIGGHSSNKYVCLDPNLNERPHIRIQGLQRPSVRSDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 43 | 43 | 9.18 | ||
| PANTHER | 2 | 214 | 213 | 3.2E-94 | – | |
| PANTHER | 2 | 214 | 213 | 3.2E-94 | – | |
| Pfam | 2 | 43 | 42 | 5.7E-5 | ||
| SUPERFAMILY | 3 | 99 | 97 | 1.7E-11 | ||
| Pfam | 93 | 207 | 115 | 1.1E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0204700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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