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LotjaGi5g1v0208400.1

Overview

Field Value
Gene ID LotjaGi5g1v0208400
Transcript ID LotjaGi5g1v0208400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein; TAIR: AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42; TrEMBL-Plants: tr|A0A151U5K0|A0A151U5K0_CAJCA RNA-binding protein 42; Found in the gene: LotjaGi5g1v0208400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:51007616..51013182) extracted from Lotus japonicus Gifu genome v1.2.

AAATAGTGACACGTCTTCTCCAAAAACCACCTTCGAGTTCCGATTCCTTCCATTTCCATTTCCATGGCGACACCGGCTTC CTCCACCGCATTGCAATCACAATTCACCTATTCCGACGCCTCCTACTTCCCCGTCCCCTTCCACCTTCAACAACCCGCAA CCACTCACTACGCCGCGCCTCCTATCGTCGGTCCCCTTCCTCCGCCACCGGTAGTCGCCGCCGCGTACACCGTGCCACAA TATCCGGTCAGTGTTATCCTTCGTGTTTAGAATAAGGAAAGTGTGAAGATTCTGTGAAATTGATTGAATGCGGTTTTTGA TTGAACAGGCGCACCAGTTGTTTGAGAGGGATGCGCAGATAATAACACCGGAGGCTCTTGAGAGTGTCAAGGCGGCGATC GCGAGCAGTGATGTGGAGCACAAGGCTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGACAGACATGGGAGGA TCCTGTTCTTGCAGAGTGGCCTGAAGGTATCATCTATGACATTGCTATTTGTTATTTACAGATTACGGATTCGATTTTGA TTTGTTGTTATCTCGTGCATGATAATCTGTTATTCCTTAATTCAGTTTCTGTACAAGTAATTTGGATGTGGAATTTCAGT TCATGATTTTGTTCAGGGATGTCAAAATCCTGTTAGTGTAATAACTGATAATAATCCTGTTAGTAAGGGTTTCAACTTGT GGACTGTGATTATAGTAGCAGTCATGAAATGGTTAATGCTAGGTGTAAGTAAAATGTACAGCGAATCATGATGAGAAACA AGAAATTGTGGCTGAGTTTTCTGTTGTGATATAATGAATTTATCATTAGGGGGGTTGGTTGGGGGAGGGGGGGGGGGGGT CTTTAATGTAGATTGCCCTGTTGACTCTAAATTGATGGTGTCTTGTTGAGATACCATTGATTTTTGAACAATATGTTGAG AGATTGTTGTTGTTGTTGTTGTGGGGGTCTTCAGACTTCAATGCAGCTTGCCCTGTTGACTTTAAATTGATGTGGGGTCT TTTTGAGATATCATTGGCTCACCGTGCAGAACTCTTTTACATTGTCAGTGCATATAAATTAATTTTTTCTTTTTGTTTAT ATTAAACAGGTTTTATACTTTTATATTTGAATGATATGTTGAAAAATTGTTATTGGTGTGGGGGCCAGAAGTTTCATGTA CTTGCCCCCTGCATTCTTTATAGTTGTTGTTGGCTTCTTGTTTATTTTATGTCCTCTCTCTTTAAAGCTAAATAATGTCA TTTGTCCTTTTAACTTGTACATTTTTATTATAAGACAGACTGATTTATAACTAATCCCAGGCTACTCTGATTGAGTAGCA TGGCAAATCCCTTGGTACTTGGCTACTTGCCATTTTTACTATCAGTATGATACTATGATTACATGTGGTGATGACTGAGG GGATCTCGTTCTTAGGAATTTCTCCTTATCTTTTATGTAGAAATCTAATATCCCATTATCTCTCTCACACACACAACTAG ATAAGTTTTCTATGGATTAATATATCTTATTGCTTTTGCTAATCAGATGACTATCGGCTCTTTTGTGGTGATCTTGGTAA TGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCCCGGGTAAGTGGAACTCGCG TCTAACTTAAATTCTTCAATTCTAGTAATGATTGGGTTAGTGTGAGCATTTTCTATTTCCTCTTCAGATTATTGTTTGAA GAGACAGAGTTGTTAATGATTTGAAGGTAGGTCTTGCTTTATAATTTACATTTGATTAGATGAGTTATTTTATGATTAAA GCGATGCATTATTTTGTCATCTCAGGTGTTTTTTCTTCGTCATTCTCACTATTCACTAATCAAAGGCAATTGAAATTATA TAACGGTGACATAGTTTAATGCAGTTGAATTTCAAAATCAGTTCATTTAAAATTAGTGTTGTGACTATTATTTTGAAATT ATATAACGGTGAAGGCATGTTATTAGAGAGTGGAGAACTAGAGATATAGGCCCCGTTTGGAAAAACAGCTTAATTAAGCA CTTATGGTCATAAGCGCTTATTCATAAGCTATTTTTGAAAATTTATTGAAATAAATTAAAAATAAGCTGAAAATAGCTTA TGGCAGGTCATAAGCTGTTTGCATAAGCCCTCCCAAACACTGGCATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGC TCTTCCAATCGGGGCCATATTTAAATTTCATCTCAAAAAACCTTTAGTAGCCTTATGGTAATCTATCTGTAAAAGAACTT AAGGTTTATTGTTTAGATGTCTTTTTTGGTGCAACTTCTTTTTCCTTGTAATTATCTGTGATTAGGGTATGTTTGATTTT GTCTAGGTTGTCAGAGATAAGAGGACCGGAAAAACAAAGGGTTATGGGTTTGTAAGTTTTGCCAATCCTGCTGACCTTGC AGCTGCTCTCAAAGAAATGAATGGTTAGTAAGTTGCAGACTATTTCTATGAACATCTTCTCTCTTGATCTGGTTGTTTTG TGCTGCCTTCTTTTCTATGGTTCAGTCTTCTATACAGGAGCTCTTTATAGACACACACACACACACACACACACATATTG ACTTTTGAGCAAAGGTATATAGGTCTATAGTGTTTGGACTTTGGTTCAATTGGTTGGAGGGGAGGGATTGTATTAAAATT TTCATGTTTGGTTCAATTTTTTTGAGGGAAGGGGAGGGCAGGTGGCCAAAATCTCTCTCAAATTGGGCTCCCTGATATCG GGGGAATTTAGAAGGGGCACAAGATGGGTATACAATATTTAAGTGGAGTGAATTAAATGTCTTGTATTCATATTTCACCT TTTTTAGGTTGGGACCAAAGTATATCTGCATGATGGGCAAGGAAGCTATTAGGAGCTACAATGGAAACAAAAAAAAGGCG GTTATAGTGTTTATGTGTTGTAATTCCATCACCATCATTTCATCTCATTAGTCATGTTATAAAACAAAGACTGATATTAA GTATATGTATAAGATATTAGGTTAAAAATAGGGTTAAATAAGTTTCTCGTCCCTGAACTTTAGCGAGAATTTGGTTTCCG TCCCTGAATTAAAATTTTGATGGTTTCCATCCCTTAACTTAGTAAACCGTTTGATTTTCGTCCTTTGACCATTTTGACTG CTAATGTGGCATGCCAGCTTGTAGGTGATTGCTGATGTGTCGGTGAATTAACCAGTTTAGCCGGTTTTTAACTTTTTTAA TTACAGGTTGGAAAATTTACAAATTTCAATTTTTTTTTATTCCACATCAGAACCTTCATCTCTCTTCTCCCACTTGACCT TCAACTGAACCTTCATCTCTTCTCCACTCTCACCCACCTCTTTCTCTCTCATTCCACCTTCTCCCTCACCCCCAAACCCA AACCGCCACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCCAGATCGCATCTT TTGGGTTCCTCTCTCGTTCCAGAAGATGCGCTTCATACGGCGCTTCAACAACAACAGCAGGATTCATTTTCCCCCACCCT GCTCTTGAATGGCTTGGCAAGAACTGCTTCAGGCATGGTTAGGTTTGGTAGATCTCGCGGTTCTTTCTCGTCACAGTTCT TCAATTCGTTCAACGCAGAGAGGAATCTCGCCTGACGTGCCGGTGATTGAGCTTGTGCTGCAGAGTGAGATGGTGAAGTG GGGGATTTATGGGAGGAATTCGATGGTGCGGGTGAACAATGATGTTATGTGCTTGGGGTTCTTGGATGGTGGTGTGAACC AGAGAAATCCGATTGTGATTGGAGTGTATCAATTGGAGGATGTGTTGGTTCAGTTTGATTTTGAAACTTCCATGGTTGGA TTTAGTTCTTCTCTTTAGATGAAGCAAACTAGTTGCTCTAATTTCAGATTTGGTTCTGTGCAGACGACAGCCTCAAGCTC TATTTGAGTGCTTGTGATGATGAGGCATAAAACATAGATTTTTGTTCTTAAATCTTAATTAATTAGATTATGGTGAACTA GGAACTGTTTATATTTATACTTATGGTTCTTAATCAATCTTGCCATGTTGGTGGATTTTTGAAGTGGTTGGGATGGTGCA GGGTGCCTTGCGTATAGTGGGGTGTTAAATTTTTCTGGTTTTATATTTGCTAGATATGGCTTGATTACATAATTAGTCTC CTTTCTGTATTAGTTTATCAGTGTTTGGCACTTAAACTTTTTCTTTATCTCTCTTGTTCACTTGTGGATGAAGATGATAG AGTATGATGAAATTTTAATTTTTTGATTTTAGTCCCTCTATATATTCCATGTGGAATAAAAAAAATTAAAAACCGATTAA TTGACTGACACGTCAGCAGTCACCTACAAGTTGGCATGCCACATTAGCAGACAAAATGGTCAAAGGACGAAAATCAAACG GTTTACTAAGTTAAGGGATGGAAACCATCAAAATTTTAATTCAGGGATGAAAACCAAATTCTAGCTAAAGTTCAGGGGCG AAAAACTTATTTAACCCTTAAAAATATGAAAATCCTATACAAACATGTGCAGTAACAATACAACTCTACAGGGGTAGAAA CTCATAGCTTGTGCAATCCAAAACCCTAATGATGATGGAATATCTTTTCTTTTGTGCATGGCCATGAATGGAATTATGGC TTATCCTTTATCTGTCATTGAATCTTGTCTTTGTAGATGTAGAATATTGTGACAAATGCAATGACATGTATCCTGATTAC TGACTTTGATATCTTCATTTCAGGTAAATATGTTGGAAATCGGCCAATAAAACTACGAAAGAGTAAATGGAAGGAGAGGA CAGATTACGAGGCACTGGAAAAACAGAAGGTTGCAATTTGCTTTGTCAGTGATTTGAACATCCTCTTGTACATCCGAACT TAATTCTTTTGTTGTTTGAATGGCAGAACCAATTACACAAGAAACCGAAATTGCCAAGGAAGGGTGTTCTACACAAGTGA AATGGGCCAGAATCTGTGTAAGTCAAGGTGATGCCTGGTGGGGAGTGTAAATACCGGTGCGCAGACATTTTTGTAATTGA TAAATATAGGCATGCATACTTAAAAATATGTATGCCACCCATGAATCTTGGATTTTTCATTCTACTTGGAATTGATGTAT GTATCCTTCCGACTAGCATAAGAAACTCTTTGGAAACAGTCCCTGTGAGTTTACAAGAGATCCTCTGGAATTACCCTGCT ATGAACATAATTATTAATAGTATTTTTATGAACGTGTTATTATGGTAAATGCTACCATACCACAATTGTATCATACCTCA GTGATGTGGACCAATAGGAGTTGCTTTGACCGTAAACTTTGACTTCTTTATTTTTCTTTTTAAAAAATAGCGTGACTGGG AACATACCATATAACATGACTGGGAACATGGCATACAATTATTTTTGAAAACAAACACTCTGTTTGGTTCTGTGTTGGGA AATTTCATAATCAATTTTGGAGAGAGTTTACAACCCGCAGTTTATAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0208400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACACCGGCTTCCTCCACCGCATTGCAATCACAATTCACCTATTCCGACGCCTCCTACTTCCCCGTCCCCTTCCA CCTTCAACAACCCGCAACCACTCACTACGCCGCGCCTCCTATCGTCGGTCCCCTTCCTCCGCCACCGGTAGTCGCCGCCG CGTACACCGTGCCACAATATCCGGCGCACCAGTTGTTTGAGAGGGATGCGCAGATAATAACACCGGAGGCTCTTGAGAGT GTCAAGGCGGCGATCGCGAGCAGTGATGTGGAGCACAAGGCTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGG ACAGACATGGGAGGATCCTGTTCTTGCAGAGTGGCCTGAAGATGACTATCGGCTCTTTTGTGGTGATCTTGGTAATGAAG TGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCCCGGGTTGTCAGAGATAAGAGGACC GGAAAAACAAAGGGTTATGGGTTTGTAAGTTTTGCCAATCCTGCTGACCTTGCAGCTGCTCTCAAAGAAATGAATGGTAA ATATGTTGGAAATCGGCCAATAAAACTACGAAAGAGTAAATGGAAGGAGAGGACAGATTACGAGGCACTGGAAAAACAGA AGAACCAATTACACAAGAAACCGAAATTGCCAAGGAAGGGTGTTCTACACAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0208400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATPASSTALQSQFTYSDASYFPVPFHLQQPATTHYAAPPIVGPLPPPPVVAAAYTVPQYPAHQLFERDAQIITPEALES VKAAIASSDVEHKADTKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRT GKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQLHKKPKLPRKGVLHK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47640:SF21
15 231 217 1.3E-105 –
PANTHER
PTHR47640
15 231 217 1.3E-105 –
Gene3D
G3DSA:3.30.70.330
74 215 142 1.1E-23
IPR012677
SUPERFAMILY
SSF54928
107 203 97 6.99E-25
IPR035979
CDD
cd12383
117 199 83 2.29619E-56
IPR034215
ProSiteProfiles
PS50102
123 201 79 16.261
IPR000504
SMART
SM00360
124 197 74 2.7E-21
IPR000504
Pfam
PF00076
125 195 71 1.3E-19
IPR000504
MobiDBLite
mobidb-lite
211 231 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0208400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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