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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0208400 |
Transcript ID | LotjaGi5g1v0208400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding protein; TAIR: AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q6AXT7|RBM42_RAT RNA-binding protein 42; TrEMBL-Plants: tr|A0A151U5K0|A0A151U5K0_CAJCA RNA-binding protein 42; Found in the gene: LotjaGi5g1v0208400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51008143..51013119) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACACCGGCTTCCTCCACCGCATTGCAATCACAATTCACCTATTCCGACGCCTCCTACTTCCCCGTCCCCTTCCA CCTTCAACAACCCGCAACCACTCACTACGCCGCGCCTCCTATCGTCGGTCCCCTTCCTCCGCCACCGGTAGTCGCCGCCG CGTACACCGTGCCACAATATCCGGTCAGTGTTATCCTTCGTGTTTAGAATAAGGAAAGTGTGAAGATTCTGTGAAATTGA TTGAATGCGGTTTTTGATTGAACAGGCGCACCAGTTGTTTGAGAGGGATGCGCAGATAATAACACCGGAGGCTCTTGAGA GTGTCAAGGCGGCGATCGCGAGCAGTGATGTGGAGCACAAGGCTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCT GGACAGACATGGGAGGATCCTGTTCTTGCAGAGTGGCCTGAAGGTATCATCTATGACATTGCTATTTGTTATTTACAGAT TACGGATTCGATTTTGATTTGTTGTTATCTCGTGCATGATAATCTGTTATTCCTTAATTCAGTTTCTGTACAAGTAATTT GGATGTGGAATTTCAGTTCATGATTTTGTTCAGGGATGTCAAAATCCTGTTAGTGTAATAACTGATAATAATCCTGTTAG TAAGGGTTTCAACTTGTGGACTGTGATTATAGTAGCAGTCATGAAATGGTTAATGCTAGGTGTAAGTAAAATGTACAGCG AATCATGATGAGAAACAAGAAATTGTGGCTGAGTTTTCTGTTGTGATATAATGAATTTATCATTAGGGGGGTTGGTTGGG GGAGGGGGGGGGGGGGTCTTTAATGTAGATTGCCCTGTTGACTCTAAATTGATGGTGTCTTGTTGAGATACCATTGATTT TTGAACAATATGTTGAGAGATTGTTGTTGTTGTTGTTGTGGGGGTCTTCAGACTTCAATGCAGCTTGCCCTGTTGACTTT AAATTGATGTGGGGTCTTTTTGAGATATCATTGGCTCACCGTGCAGAACTCTTTTACATTGTCAGTGCATATAAATTAAT TTTTTCTTTTTGTTTATATTAAACAGGTTTTATACTTTTATATTTGAATGATATGTTGAAAAATTGTTATTGGTGTGGGG GCCAGAAGTTTCATGTACTTGCCCCCTGCATTCTTTATAGTTGTTGTTGGCTTCTTGTTTATTTTATGTCCTCTCTCTTT AAAGCTAAATAATGTCATTTGTCCTTTTAACTTGTACATTTTTATTATAAGACAGACTGATTTATAACTAATCCCAGGCT ACTCTGATTGAGTAGCATGGCAAATCCCTTGGTACTTGGCTACTTGCCATTTTTACTATCAGTATGATACTATGATTACA TGTGGTGATGACTGAGGGGATCTCGTTCTTAGGAATTTCTCCTTATCTTTTATGTAGAAATCTAATATCCCATTATCTCT CTCACACACACAACTAGATAAGTTTTCTATGGATTAATATATCTTATTGCTTTTGCTAATCAGATGACTATCGGCTCTTT TGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCCCG GGTAAGTGGAACTCGCGTCTAACTTAAATTCTTCAATTCTAGTAATGATTGGGTTAGTGTGAGCATTTTCTATTTCCTCT TCAGATTATTGTTTGAAGAGACAGAGTTGTTAATGATTTGAAGGTAGGTCTTGCTTTATAATTTACATTTGATTAGATGA GTTATTTTATGATTAAAGCGATGCATTATTTTGTCATCTCAGGTGTTTTTTCTTCGTCATTCTCACTATTCACTAATCAA AGGCAATTGAAATTATATAACGGTGACATAGTTTAATGCAGTTGAATTTCAAAATCAGTTCATTTAAAATTAGTGTTGTG ACTATTATTTTGAAATTATATAACGGTGAAGGCATGTTATTAGAGAGTGGAGAACTAGAGATATAGGCCCCGTTTGGAAA AACAGCTTAATTAAGCACTTATGGTCATAAGCGCTTATTCATAAGCTATTTTTGAAAATTTATTGAAATAAATTAAAAAT AAGCTGAAAATAGCTTATGGCAGGTCATAAGCTGTTTGCATAAGCCCTCCCAAACACTGGCATAAGAGCTTATGCTGTCA GATAAGCTCAAATAAGCTCTTCCAATCGGGGCCATATTTAAATTTCATCTCAAAAAACCTTTAGTAGCCTTATGGTAATC TATCTGTAAAAGAACTTAAGGTTTATTGTTTAGATGTCTTTTTTGGTGCAACTTCTTTTTCCTTGTAATTATCTGTGATT AGGGTATGTTTGATTTTGTCTAGGTTGTCAGAGATAAGAGGACCGGAAAAACAAAGGGTTATGGGTTTGTAAGTTTTGCC AATCCTGCTGACCTTGCAGCTGCTCTCAAAGAAATGAATGGTTAGTAAGTTGCAGACTATTTCTATGAACATCTTCTCTC TTGATCTGGTTGTTTTGTGCTGCCTTCTTTTCTATGGTTCAGTCTTCTATACAGGAGCTCTTTATAGACACACACACACA CACACACACACATATTGACTTTTGAGCAAAGGTATATAGGTCTATAGTGTTTGGACTTTGGTTCAATTGGTTGGAGGGGA GGGATTGTATTAAAATTTTCATGTTTGGTTCAATTTTTTTGAGGGAAGGGGAGGGCAGGTGGCCAAAATCTCTCTCAAAT TGGGCTCCCTGATATCGGGGGAATTTAGAAGGGGCACAAGATGGGTATACAATATTTAAGTGGAGTGAATTAAATGTCTT GTATTCATATTTCACCTTTTTTAGGTTGGGACCAAAGTATATCTGCATGATGGGCAAGGAAGCTATTAGGAGCTACAATG GAAACAAAAAAAAGGCGGTTATAGTGTTTATGTGTTGTAATTCCATCACCATCATTTCATCTCATTAGTCATGTTATAAA ACAAAGACTGATATTAAGTATATGTATAAGATATTAGGTTAAAAATAGGGTTAAATAAGTTTCTCGTCCCTGAACTTTAG CGAGAATTTGGTTTCCGTCCCTGAATTAAAATTTTGATGGTTTCCATCCCTTAACTTAGTAAACCGTTTGATTTTCGTCC TTTGACCATTTTGACTGCTAATGTGGCATGCCAGCTTGTAGGTGATTGCTGATGTGTCGGTGAATTAACCAGTTTAGCCG GTTTTTAACTTTTTTAATTACAGGTTGGAAAATTTACAAATTTCAATTTTTTTTTATTCCACATCAGAACCTTCATCTCT CTTCTCCCACTTGACCTTCAACTGAACCTTCATCTCTTCTCCACTCTCACCCACCTCTTTCTCTCTCATTCCACCTTCTC CCTCACCCCCAAACCCAAACCGCCACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC GTTCCAGATCGCATCTTTTGGGTTCCTCTCTCGTTCCAGAAGATGCGCTTCATACGGCGCTTCAACAACAACAGCAGGAT TCATTTTCCCCCACCCTGCTCTTGAATGGCTTGGCAAGAACTGCTTCAGGCATGGTTAGGTTTGGTAGATCTCGCGGTTC TTTCTCGTCACAGTTCTTCAATTCGTTCAACGCAGAGAGGAATCTCGCCTGACGTGCCGGTGATTGAGCTTGTGCTGCAG AGTGAGATGGTGAAGTGGGGGATTTATGGGAGGAATTCGATGGTGCGGGTGAACAATGATGTTATGTGCTTGGGGTTCTT GGATGGTGGTGTGAACCAGAGAAATCCGATTGTGATTGGAGTGTATCAATTGGAGGATGTGTTGGTTCAGTTTGATTTTG AAACTTCCATGGTTGGATTTAGTTCTTCTCTTTAGATGAAGCAAACTAGTTGCTCTAATTTCAGATTTGGTTCTGTGCAG ACGACAGCCTCAAGCTCTATTTGAGTGCTTGTGATGATGAGGCATAAAACATAGATTTTTGTTCTTAAATCTTAATTAAT TAGATTATGGTGAACTAGGAACTGTTTATATTTATACTTATGGTTCTTAATCAATCTTGCCATGTTGGTGGATTTTTGAA GTGGTTGGGATGGTGCAGGGTGCCTTGCGTATAGTGGGGTGTTAAATTTTTCTGGTTTTATATTTGCTAGATATGGCTTG ATTACATAATTAGTCTCCTTTCTGTATTAGTTTATCAGTGTTTGGCACTTAAACTTTTTCTTTATCTCTCTTGTTCACTT GTGGATGAAGATGATAGAGTATGATGAAATTTTAATTTTTTGATTTTAGTCCCTCTATATATTCCATGTGGAATAAAAAA AATTAAAAACCGATTAATTGACTGACACGTCAGCAGTCACCTACAAGTTGGCATGCCACATTAGCAGACAAAATGGTCAA AGGACGAAAATCAAACGGTTTACTAAGTTAAGGGATGGAAACCATCAAAATTTTAATTCAGGGATGAAAACCAAATTCTA GCTAAAGTTCAGGGGCGAAAAACTTATTTAACCCTTAAAAATATGAAAATCCTATACAAACATGTGCAGTAACAATACAA CTCTACAGGGGTAGAAACTCATAGCTTGTGCAATCCAAAACCCTAATGATGATGGAATATCTTTTCTTTTGTGCATGGCC ATGAATGGAATTATGGCTTATCCTTTATCTGTCATTGAATCTTGTCTTTGTAGATGTAGAATATTGTGACAAATGCAATG ACATGTATCCTGATTACTGACTTTGATATCTTCATTTCAGGTAAATATGTTGGAAATCGGCCAATAAAACTACGAAAGAG TAAATGGAAGGAGAGGACAGATTACGAGGCACTGGAAAAACAGAAGGTTGCAATTTGCTTTGTCAGTGATTTGAACATCC TCTTGTACATCCGAACTTAATTCTTTTGTTGTTTGAATGGCAGAACCAATTACACAAGAAACCGAAATTGCCAAGGAAGG GTGTTCTACACAAGTGA
CDS sequence (LotjaGi5g1v0208400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACACCGGCTTCCTCCACCGCATTGCAATCACAATTCACCTATTCCGACGCCTCCTACTTCCCCGTCCCCTTCCA CCTTCAACAACCCGCAACCACTCACTACGCCGCGCCTCCTATCGTCGGTCCCCTTCCTCCGCCACCGGTAGTCGCCGCCG CGTACACCGTGCCACAATATCCGGTCAGTGTTATCCTTCGTGCGCACCAGTTGTTTGAGAGGGATGCGCAGATAATAACA CCGGAGGCTCTTGAGAGTGTCAAGGCGGCGATCGCGAGCAGTGATGTGGAGCACAAGGCTGATACCAAGAAGAAAGCGGT TCCTCGCAAAGCTGCTGGACAGACATGGGAGGATCCTGTTCTTGCAGAGTGGCCTGAAGATGACTATCGGCTCTTTTGTG GTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCCCGGGTT GTCAGAGATAAGAGGACCGGAAAAACAAAGGGTTATGGGTTTGTAAGTTTTGCCAATCCTGCTGACCTTGCAGCTGCTCT CAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAACTACGAAAGAGTAAATGGAAGGAGAGGACAGATTACG AGGCACTGGAAAAACAGAAGAACCAATTACACAAGAAACCGAAATTGCCAAGGAAGGGTGTTCTACACAAGTGA
Protein sequence (LotjaGi5g1v0208400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPASSTALQSQFTYSDASYFPVPFHLQQPATTHYAAPPIVGPLPPPPVVAAAYTVPQYPVSVILRAHQLFERDAQIIT PEALESVKAAIASSDVEHKADTKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARV VRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQLHKKPKLPRKGVLHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 15 | 237 | 223 | 6.6E-105 | – | |
PANTHER | 15 | 237 | 223 | 6.6E-105 | – | |
Gene3D | 80 | 221 | 142 | 1.2E-23 | ||
SUPERFAMILY | 113 | 209 | 97 | 7.52E-25 | ||
CDD | 123 | 205 | 83 | 1.81829E-56 | ||
ProSiteProfiles | 129 | 207 | 79 | 16.261 | ||
SMART | 130 | 203 | 74 | 2.7E-21 | ||
Pfam | 131 | 201 | 71 | 1.4E-19 | ||
MobiDBLite | 217 | 237 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0208400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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