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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0208500 |
| Transcript ID | LotjaGi5g1v0208500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Light-dependent short hypocotyls protein; TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|F6H618|F6H618_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0208500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51015682..51018404) extracted from Lotus japonicus Gifu genome v1.2.
CACGCGCTTAAAAGTAGAAGAGAGTGACGAATATTGATTATTTGAAATGTCTGCTCATCTTTGGTCACCATCATCACTGC TCACTGCCAAACTTTGTCCTGTTTTGGCACAACACTCTCCCTCCCCTCCCTTCATTTAACCCCTGGTTCTTCACAACAAC TTCACTCATTCATTCCCCAACCCACAAACCTCCTGGTACCACATAACTCTCAGTTCCTTCCACTTTTTCTTCTAGAATCA AATATCTGCAGATAACTAGTATTACCCTGATCCAACCTTTTACCCCCCAATCATTCCACTTCCCCCAACACTCACTCACC ATTCCCACAAAACAAGTAACCTCAATGAAACACAAACTTCACACAGTGAGTGATTGAGTGAGTGATTGAGTAAGCTCCTT CCTTCAAATCAATTGCCCCCTTCTCTCTCACTCTCTCACTCACTCACTCACTCTCTGACATATTCCACCTTTCATTTCTC ACTGCCCAGGTTCCCCCTTGTTTTCTGTCTCCCCTAATTTCTACCAAAATCCCACTTTCTTTCTTTGCATGATATCTATA TTTATCTACCTTCTCATGCCATGTTTGTTTCAAATTTAAGATAGTACCCAACGCCAAAGTAGAAGTTTTTTCTCTTGCAT CGAGAACTTCAACAATTTGTACTATAATATCTCTCTCTTTCTCTCTCAGTATCTATATCAAACACATGGTGTACACTTTT CACTTTTCTTATATCACTCATCAGTATCTATATCTAATTAGTACTATCAAAACCAAAACCCTAGTTCTCAGAACAAGAAC AACAAACCCATTGTTCAGATCCATAGATCAATCTTCATCACCATGGATTTGGTTTCTGAATCAACAACGTCAACGCCGAT CACGCCACCAACCATGAGCATTTCAGCTTCCGCCACCGGAAGCAGCGGTACTGTAACCACCCCCACCGCGGCCACGACTC CGAGCCGTTACGAGAACCAGAAGCGGCGAGACTGGAACACGTTCTGCCAGTACCTTCGAAACCACCGTCCGCCGCTGTCG CTGTCTCTCTGCAGCGGCGCGCACGTGCTGGAGTTTCTCCACTATCTCGACCAGTTCGGGAAGACGAAGGTTCACAACCA TCCTTGCCCGTTCTTCGGGCTTCCGAACCCGCCTGCTCCCTGCCCCTGCCCGCTCCGGCAGGCATGGGGAAGTCTCGACG CGCTCATCGGACGTCTACGCGCCGCCTATGAGGAGAACGGAGGTAGGCCGGAGACGAACCCGTTCGGTGCTCGCGCGGTG AGGATTTACCTCCGGGATGTTCGTGACTTCCAGACGAAGGCGAGAGGTGTTAGCTATGAGAAGAAGAGGAAGAGGCCTAA GCCCAAGATGATAACAACCACCGCTGCAACTGCTTCTACTTAGTGAAGGTTAATTTTTTGGCGAGCCCAGAGTATCCACC GCCGACAGCAACAGATAGCAATTAGTAGTCCTTTTGTCGCAGGTGCTCGCACTAGTGAAGCGTTAATTACCTGAAGATTA AGTAAAATAATTATAATTAACTGCAGGTATATATATGAATGATGATATAATGTGTATATGGTTATGTTTCTTAATTTCTA TCTTTGATGTTTTGTTATGGATGTTGTTGAAATTGTTGTGATGACTTGTTTAGGAGTTGGGGGAAGTAGATAGTGGAAGT TAAGTTCCATGAGTTAGCTCTGTGCTTAGTAATGGGTTCTGATGATATGAACTACTTGAGGAAGAAGAGTTATGATGATT GTTTGTACTGAATTAATGGTGTGCTTAATTGAATCTCTACCCTCTCCTCTTGTGGGAGCTTATTGAAGATTATGGTTAAT CATTATTACATGGGATTGATTGGGTGAGGTTATTCATTCAATGTGCTGAGATATTTGTGTAACATTAACTATGTATGGGT ATGATGCTGTATGCTGGGAATTGAATATAAGTATCCATTGCCTGTGTGTTTTTTCATATTCACTCATGGAGAGTTTAGAA TAGCTATAGGATGGTGATCTTCTTTTTCATGATGAAAAACACACTTAACACATGAATTTAGATTATCTGCAAGTTTAGCA AGTTTTTTTTCCAGATTAATCCTAGCTATTGATTACCAAAATCAATGACCTATTATTGTGCAGCTATAGACTATAGTGAA TCTCTGCTTAAGAGGATCCAATTTCCTAAATAGATATGATATATAGAACACAATACAAACACCTCTTAAACATAGTACAA ACACCTCTTAAACATCTAATTTTTCTCTTTGGCTATTACTCACTTTTTATCACATTATATCTTTTCATTCTCTAACTTCT TTTCTTCCTCACTTTTCATCCTCTTTGAATGTTTTGAATGTGAACATTTTTTTGGTGGTCTACCGAGCATTTTCCACTGC GAAACACATACACTAAACACCGCTTTTGGGCAGCTTTCTTTCTCTGCAATTCTGCATCCATGCATATTCAGAGTAGAGGG AAATTTAATTATTAGTAAGCTAGTGCTATCACAAAAAGTGATCTGTACGTAGCATTGATTTAAACCTAGAGGACGTACGT ACGTGCGTTAATTGGAATGATTGTTAGCTAGTTAGAAATAATCAATTTATAACTCTTGATAAATTAAGCATTTATTAAGT AGAAGTCTAGAAGGCTCACGAGCCTAATATGTAATTGGTCAAATTCATATCAAAAAAAATATTGTAGTAGTAAAAGATGA TCT
CDS sequence (LotjaGi5g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGTTTCTGAATCAACAACGTCAACGCCGATCACGCCACCAACCATGAGCATTTCAGCTTCCGCCACCGGAAG CAGCGGTACTGTAACCACCCCCACCGCGGCCACGACTCCGAGCCGTTACGAGAACCAGAAGCGGCGAGACTGGAACACGT TCTGCCAGTACCTTCGAAACCACCGTCCGCCGCTGTCGCTGTCTCTCTGCAGCGGCGCGCACGTGCTGGAGTTTCTCCAC TATCTCGACCAGTTCGGGAAGACGAAGGTTCACAACCATCCTTGCCCGTTCTTCGGGCTTCCGAACCCGCCTGCTCCCTG CCCCTGCCCGCTCCGGCAGGCATGGGGAAGTCTCGACGCGCTCATCGGACGTCTACGCGCCGCCTATGAGGAGAACGGAG GTAGGCCGGAGACGAACCCGTTCGGTGCTCGCGCGGTGAGGATTTACCTCCGGGATGTTCGTGACTTCCAGACGAAGGCG AGAGGTGTTAGCTATGAGAAGAAGAGGAAGAGGCCTAAGCCCAAGATGATAACAACCACCGCTGCAACTGCTTCTACTTA G
Protein sequence (LotjaGi5g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLVSESTTSTPITPPTMSISASATGSSGTVTTPTAATTPSRYENQKRRDWNTFCQYLRNHRPPLSLSLCSGAHVLEFLH YLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGARAVRIYLRDVRDFQTKA RGVSYEKKRKRPKPKMITTTAATAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| MobiDBLite | 1 | 42 | 42 | - | – | |
| PANTHER | 6 | 182 | 177 | 9.0E-108 | – | |
| PANTHER | 6 | 182 | 177 | 9.0E-108 | ||
| Pfam | 38 | 155 | 118 | 6.9E-65 | ||
| ProSiteProfiles | 42 | 169 | 128 | 82.655 | ||
| MobiDBLite | 161 | 186 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0208500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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