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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0212100 |
| Transcript ID | LotjaGi5g1v0212100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prefoldin subunit 4; TAIR: AT1G08780.1 ABI3-interacting protein 3; Swiss-Prot: sp|Q9M4B5|PFD4_ARATH Probable prefoldin subunit 4; TrEMBL-Plants: tr|I3SG24|I3SG24_LOTJA Prefoldin subunit 4; Found in the gene: LotjaGi5g1v0212100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51696201..51698517) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAATAAGCTCAAAACAACTTAATATTTAGATCATTTGTTTAATTTTAAAAGTAGAGGATCTTATTAGAACTAGAGGG ACTAAAATTACAATTAATCCAAATATATTTACTTCTCAGGTGTTTGGTTACAAGCAACGGTGGTCATCGTCAACCTGATA CTGCTACTGGTATCGCTGCTGCGAACGAAAAACCCTAAATTGAATTTCAATCAACAGCATGCAGCACCAGGTAACAAGCT CGAAACCCTAGATTTCATTCTTGATTCGCAATGTTTGATTTGTAATCCTCATTTGTTTCTGATCCGAATAGGGTGGAGGA TCTGAAACCGAAGTCACATGGGAGGATCAGCAGAACATCAACAAGTTCGGAAGGATGAATAATCGCCTTCACGAGCTTGA CGATGAGATCAAAGTCGCCAAGGTATTCAATCAATCAATCAATCAATCGTTTTTTCAATTTTTCAGTTGCAGAAAGGGGA AGTTAAGAACCCCTGTTATTCAACGCTTTGATTGAAGTTTCTGTGTTATCATTCATTGAGATTAGTAGAATAAGTGAGGA AAAATGCATCCTTTAATTTGAAAGTTGGTCGATATGAAATGGGTCCAAAATCAAAGAAATTGGTTTAGTTTTGTGAATGT TACCAATATATCTATCCTTTGCTGCATGCCTTTTCTATGTAAGTAAGAATGATGTTGGAAGTAAAAATTGGAAACGGCAT CGTACCACAAGTTTTGCCGTTTAAGTACCTTGGATCGGTTATAAAAGATAATGGGGAAATTGACAAAGGTGTTACACATA GAATTCGAGCTGGGTGGTTAAAGTGGAGGAAAGCATCAGTTTAAGGATATGCTATGCACAGATTTTAATTTACTTGCTTA GCTATATATGAGAAATCAACTTCAATTCTTACCTGAATTGATGTATGCTTTAAAACATAGAACAAGCTCTAATAGTTAAA CTTCAGTCTTCAGTGTGTCCTATTGTATTTCATTTGTTGAGTTGTGTGAATGTTATCAATATATCTTATGCTTGGTTGCA TGCCTTTTGTAGAAACAGGACCTAAGTGGGTTATTCTCTTGTTTCAATATTAAGATTCAATAATATCCCTAGATCTACTT GAATCTCACTGAATACACATTAGGTTGGAATTGCATCATCTCATCTGGAAAATGCTTAGAACCTGTTTGTATAATGTTCT CTTTCTACGTTTTGAGCAACAAAACTGAAAAGTAGCAAATAGCTACTTCTATTAAAGGTGCATCGAAACTTAACATTTTT CAATTTTTCTGTATTCGACAAATAGGCGTTTAACCTCTTACCTGCTCCTCAGGCTCTTTAGGACTGGACTAAAAGGAACA TTTTTGCTACTTGCTAATCTGAGAAAAATATTGAATCTGCTAGATTAGGTGAAAATTATAAGACAATTAAGTGATTATAT CATTCAAAATTATGTATACAAACTGATTTTAATTTTGTTTGAGTTAGCTACTTAGCTATTCCTTTCTTTTCTTACATGTG AATGTGTACATAAATGCACATGTTTAAGAGCTTATCTGATCATCTGTTTTATCCTTCAACTTCTCTGTTTGGTTAAATGA TTGTATCTGTTCTTGTAGGTCGTGTTATGGTTTTAATTTCACTGCCATCCAAGCATTCTGTGATGGCAAACCCATTGGGA TGCCTTTTTTATGCAAATGTTTGTTTTTTTTTCACAGGAAACAAATGAAAACTTTGAGGATGCGAGCAATGAGTTGATTC TCACAGATGAAGATGTAGTTAGGTTTCAAATAGGGGAGGTTTTTGCTCATGTACCAAAGGATGAAGTTGAGAGCAGGATA GAACAGATGCAAGAGGTGACAAGCAAAAAATTGGAAAAACTTGAAGAAGAAAAAGAGTCTGTGCTAGCTCAGATGGCTGA ACTGAAGAAAGTTTTGTATGCGAAGTTCAACGACTCAATCAATCTTGAGGAGGAATAGCAACTTTCTTCTTGTTGATAGT TCTCTAGGTTTTTTTCAGATGGCTGAACTGAAGAAAGTTTTGTATGCGAAGTTCAACGACTCAATCAATCTTGAGGAGGA ATAGCAACTTTCTTCTTGTTGATAGTTCTCTAGGTTTTTTTCCCTCAGAGCTTTAGAATGTGTCTTATTGGATCCTCTTC CTCACTTATTTGCCTCTGTCTCTGCCTTCCTTTGGCTTTCTTTTATGTAAAATTACTGTCCCCTTTATTCTATTCTAAAG GGGAAAAGTCCTTAATTGTTTTCCTGGATTCAGAATATCGTGATGCTTTAACTTCTCTTTAAGGTAATGGATTCACT
CDS sequence (LotjaGi5g1v0212100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCACCAGGGTGGAGGATCTGAAACCGAAGTCACATGGGAGGATCAGCAGAACATCAACAAGTTCGGAAGGATGAA TAATCGCCTTCACGAGCTTGACGATGAGATCAAAGTCGCCAAGGAAACAAATGAAAACTTTGAGGATGCGAGCAATGAGT TGATTCTCACAGATGAAGATGTAGTTAGGTTTCAAATAGGGGAGGTTTTTGCTCATGTACCAAAGGATGAAGTTGAGAGC AGGATAGAACAGATGCAAGAGGTGACAAGCAAAAAATTGGAAAAACTTGAAGAAGAAAAAGAGTCTGTGCTAGCTCAGAT GGCTGAACTGAAGAAAGTTTTGTATGCGAAGTTCAACGACTCAATCAATCTTGAGGAGGAATAG
Protein sequence (LotjaGi5g1v0212100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHQGGGSETEVTWEDQQNINKFGRMNNRLHELDDEIKVAKETNENFEDASNELILTDEDVVRFQIGEVFAHVPKDEVES RIEQMQEVTSKKLEKLEEEKESVLAQMAELKKVLYAKFNDSINLEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 126 | 126 | 5.9E-41 | ||
| PANTHER | 3 | 126 | 124 | 3.0E-51 | ||
| Gene3D | 10 | 121 | 112 | 2.0E-6 | ||
| SUPERFAMILY | 17 | 117 | 101 | 4.97E-8 | – | |
| Pfam | 17 | 120 | 104 | 3.5E-23 | ||
| Coils | 23 | 53 | 31 | - | – | |
| Coils | 79 | 113 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Cellular component | Prefoldin complex | A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi5g1v0212100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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