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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0213100 |
| Transcript ID | LotjaGi5g1v0213100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G16930.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0213100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51830259..51832322) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGTTCGAACAACCTCTCAAAGAACGAGGAGCACTCGCCGCTGCTGACACATAACCCATCGCTCGCCGCCGCTGCTGG AAGTCCTTGCTTGATCCTGATCGGAAGTCTATTTGAGCAAACATGGATGACGACAGAATCAGCAGTTTACCAGATGAAAT CCTCTGTCACATTCTCTCGTTCCTTCCAACTCAACAAGCAGTTCACACAAGCGTTCTTTCAAAGCGGTGGATTCATCTCT GGACCTCCGTCCCCGTTCTCGACTTCGACAATCGATTCCATCCATTCGGCTTCGAAAATTTCATACACGCAACCATTCAA GCCAGAAATCTGCAACAACCCATCACAAGTTTTCGTCTCAAATATTATCAGCTTCTTCATCGTCGATCTGAGGATGTGAA GGCCGATATCAATGCTTGGGTAAACACTGTTATCGACTGCGGCATCGAGAACCTTGAAATCAGGAAAGAATGGGAGCGCC AGCCTCTATGTAATTTCATTAGTTTGAGCTGCAGAATTCTCAGCTGCAAAACCGTAGTGGTTCTCAATTTGGGAAGGGTA TCTATAGCGGCTTCGTCTTCCGTTGAGCTTCCCTCACTCAAATCCCTACGTTTGAATCGCGCTGAATTGAAAGAACCTCA ATATCTTATGGAGCTTCTTTATGGGTGTCCAATGCTAGAGGATTTACACATATATATGCTACATTATGATCATTTTGGGT CGGTTTGTAAGGAAAGGTTTAAAATCTTACCCAAATTGGTGTGGGCAGATATCTGGGTTGTTGGTATGGAAATTATGGAT GGTAATGATGTGAATGTTCTTCTGAAAACAATATCTAATGTGAAGTTTTTGAGCATTTCACAGGTTCGAATATATTCGGA TAGGAATGTGTTTAGTTTGTTTGGTTTCGTTTTTAGATAATGTCACCTATATTTCTCATAATTTGTGTTTACAACTAGTG CAGTTTCAAGTTAATGATGCGGTTCCTGAATTTCCTCATTTAAGAGATTTGACCCTCTTATTGGAGTTTCATAGCTGGCA TTCGGTGCTTTTGATGCTAAAGAGTTGCCCCAAGCTTCAAAGTTTTGAATTTGATGGAATTTTTAAAGCTATGAATTTTC TACCTTACCCTCATTTTGTTCCTGATTGTCTTACTGAAAGTTTAACGAAGTGCCATCTCCGTTATCACCAAGGCACAAAA AATGGCCTACAACTTGCAAAATATATTTTGCAGAATTCAACATATTTACAGGTCTTGAAAATTGGTCATGCTTTACATAA TCCAGCTGAAGTGCTGAAGGTGTTAGCTTTGTGCCCAAGGAAATCTGCATCGTGTGAACTTTCATTTATTAGATAGGTTT GTTAGTAGCGGTAAACTTTTTCGTATGTTGTGTTATTTCCCAATGTGCACATGCTATGAGTATCTGGTATATACTACTAA TTTTGCTTCCTCAATGTTTTTTACAAACTCTAGCAGTGACATATTTTCTGTGTATGCTTTTCCTGAGTCAGAATGGCAAT AAGACTGTTGCCAGTTTTGTTTGATTTTTTGTGGTTTTTAATTGCAGTCCTTGGATTGGAACTCTATACGAGGATGCTGC AGAAAAAAAAATGCATTTGGAGGATGTGACGCTTCTGAATACAATATTTAGTGTTGAGAATCTGAAATACATTTGTTATC CTGGTGATCCATCATCTGCTATCCATGTGAGTATGTGACTAGGAAGTGACGTTTAGATCGCAAGAAGAAACAATCAGAAA GAAACATCCCTTATGTAATCTTCTTAGAATGAAATATTGGAATAATTCTCAGATTTCTTTTCTCTGAATTCTCTGTTTAG TGTTTATTGTTCTTCAATACTGAATTGCTCAATGAGATAGTGCAAGAGTAGCTCATATATAGACTAGTTACTAACTTACT AGAACTGTCTATGCTAGCAGTTACAGCTTATAGTTTTAAAGTTACCTTCACTCATTTCATTTCCTCATTGCTATTTCCTT CTCTTAGAGTTTTGAACACAAATATAGAAGATACTAGTCTGAATAGAGTTATACAAATTCTTTT
CDS sequence (LotjaGi5g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACGACAGAATCAGCAGTTTACCAGATGAAATCCTCTGTCACATTCTCTCGTTCCTTCCAACTCAACAAGCAGT TCACACAAGCGTTCTTTCAAAGCGGTGGATTCATCTCTGGACCTCCGTCCCCGTTCTCGACTTCGACAATCGATTCCATC CATTCGGCTTCGAAAATTTCATACACGCAACCATTCAAGCCAGAAATCTGCAACAACCCATCACAAGTTTTCGTCTCAAA TATTATCAGCTTCTTCATCGTCGATCTGAGGATGTGAAGGCCGATATCAATGCTTGGGTAAACACTGTTATCGACTGCGG CATCGAGAACCTTGAAATCAGGAAAGAATGGGAGCGCCAGCCTCTATGTAATTTCATTAGTTTGAGCTGCAGAATTCTCA GCTGCAAAACCGTAGTGGTTCTCAATTTGGGAAGGGTATCTATAGCGGCTTCGTCTTCCGTTGAGCTTCCCTCACTCAAA TCCCTACGTTTGAATCGCGCTGAATTGAAAGAACCTCAATATCTTATGGAGCTTCTTTATGGGTGTCCAATGCTAGAGGA TTTACACATATATATGCTACATTATGATCATTTTGGGTCGGTTTGTAAGGAAAGGTTTAAAATCTTACCCAAATTGGTGT GGGCAGATATCTGGGTTGTTGGTATGGAAATTATGGATGGTAATGATGTGAATGTTCTTCTGAAAACAATATCTAATGTG AAGTTTTTGAGCATTTCACAGTTTCAAGTTAATGATGCGGTTCCTGAATTTCCTCATTTAAGAGATTTGACCCTCTTATT GGAGTTTCATAGCTGGCATTCGGTGCTTTTGATGCTAAAGAGTTGCCCCAAGCTTCAAAGTTTTGAATTTGATGGAATTT TTAAAGCTATGAATTTTCTACCTTACCCTCATTTTGTTCCTGATTGTCTTACTGAAAGTTTAACGAAGTGCCATCTCCGT TATCACCAAGGCACAAAAAATGGCCTACAACTTGCAAAATATATTTTGCAGAATTCAACATATTTACAGGTCTTGAAAAT TGGTCATGCTTTACATAATCCAGCTGAAGTGCTGAAGGTGTTAGCTTTGTGCCCAAGGAAATCTGCATCGTGTGAACTTT CATTTATTAGATAG
Protein sequence (LotjaGi5g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDRISSLPDEILCHILSFLPTQQAVHTSVLSKRWIHLWTSVPVLDFDNRFHPFGFENFIHATIQARNLQQPITSFRLK YYQLLHRRSEDVKADINAWVNTVIDCGIENLEIRKEWERQPLCNFISLSCRILSCKTVVVLNLGRVSIAASSSVELPSLK SLRLNRAELKEPQYLMELLYGCPMLEDLHIYMLHYDHFGSVCKERFKILPKLVWADIWVVGMEIMDGNDVNVLLKTISNV KFLSISQFQVNDAVPEFPHLRDLTLLLEFHSWHSVLLMLKSCPKLQSFEFDGIFKAMNFLPYPHFVPDCLTESLTKCHLR YHQGTKNGLQLAKYILQNSTYLQVLKIGHALHNPAEVLKVLALCPRKSASCELSFIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 45 | 45 | 1.7E-7 | – | |
| PANTHER | 3 | 373 | 371 | 2.8E-62 | – | |
| ProSiteProfiles | 3 | 55 | 53 | 9.868 | ||
| PANTHER | 3 | 373 | 371 | 2.8E-62 | – | |
| SUPERFAMILY | 3 | 72 | 70 | 5.49E-15 | ||
| Pfam | 5 | 43 | 39 | 2.4E-7 | ||
| SMART | 9 | 48 | 40 | 0.0013 | ||
| Gene3D | 89 | 375 | 287 | 3.3E-10 | ||
| SUPERFAMILY | 128 | 293 | 166 | 4.71E-10 | – | |
| Pfam | 303 | 347 | 45 | 3.6E-10 | ||
| SMART | 308 | 376 | 69 | 4.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0213100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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