Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi5g1v0215300
Transcript ID	LotjaGi5g1v0215300.1
Lotus japonicus genome version	Gifu v1.2
Description	50S ribosomal protein L34; TAIR: AT3G13882.1 Ribosomal protein L34; Swiss-Prot: sp\|Q15MS4\|RL34_PSEA6 50S ribosomal protein L34; TrEMBL-Plants: tr\|I3S1W2\|I3S1W2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0215300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:52074047..52082876) extracted from Lotus japonicus Gifu genome v1.2.

CTTTTTATTTGATTCAGTAAATTGGGTTTTTTCTATACATATTGTTGGAATCTCATCTGCCAAACAAAACCCGATCCAGC TTCCCTGTTCTTCGCACACTCACCAACTAGGGTTTTGGAAAAGCTTGAGTAACCAAACAAACAATGGCGTCCAAGACGCT TCTGAGAAGTGGATCTACATTGCTGAATCGCTTTTCAAATTCAAAATCGCTTCTCAACCCAAATTTGCATCCCAATCACC CTCTTCCTCAGCTATTCCAAATCCCACCCCTCTCTAAGCTCCCCAGTTTCCCCCAAAACGACGCCGATTCACCCAGCAAG CTTCTCGCCTCCCAAGGGTTCCTCTACCCGTGTGGCCTCCCTGATCTCAGCTTCTTCCTACCTCAAGCCACAGTCGATGT ATCCTATGGTATATATATACATACTTTTATTTGAATCATAAATTTAATTTCACTTCATGGGTGGTGTATAATTGCATTTT GGAATTCAATTCACCACCAGTAACAAATGCTGGGTTGATGATTTTTCAATGTCCAGTTTATATGGATTTTTTTGTGTGAA TCTTGATTATGCTTGCTCTTGATGAATATCAATGTTGTTAATTGCGGATGGCGAGTCATGGTCGAAAGCTAAAAATGGCG GGATATCGGCCATGAGAAACCGCCGTGGTGGTGCGATGGCGGATATTTTATAACACTGATGAATATTTTGGCTTTAGGTT TAAATGTGAATTGAAGTTCTTGCATAGAAATCATACTAACCATAACCTTTTTTTTATCCAGAAAATGAAGGAAAAGTAGG ATTTGGTTTCATTTTGAATGCATTTTTTTATCTGTATGTTTTATTGATTAAATGCTGGATTGTTAGCTGCTTATAGTGTG GCTTCCTACTTTGTTATGTACATGTAGGATATATGTATGAAAAACAATCTAATAAGATATTATAGTAAGGTTTTGTGGAA GGAACCTCAATAGTGAGGTAGGATGCTACTGAGTGTGCACGCGCGCGCACACACACACACATCATATATGGAGACGTATC AAGTGAAGAGTGTGAGGAGGCGAAATGCTAATCATAACCACACAATCACACACTGTTTTACTTAAATCCAATTCTGTCTA TCCATTTATATTGTGTGATCAGGATTATTCTCTTTCATGAGAGCATTTTCTCACCTGATACACTTATTATATAAAGAGTT AGATAGATTGATAGGTGTTTTACTGAAGGAAATAGGAGAGGACCACAAGGATGCAATTCATGTTTATGGTGAACTGAAAT TGTTATGTGATTTTTTGTACCTTTCATTTCTATTACAAAGTATATTTCCCGTACTAGCTTAAACACGAGACCATGTTTTT ATGAAAACTTGAGACATCCCTCTAGAATTTTAATTAGTATAGTTCTTGTTCTGCAGAGTGTCCTTCCAATGAAGAAGACC CTATGCTTTTATTCCCCAAAAGGAGCTATCAACCCAGCACTCTCCGACGAAAGCGGGTTCATGGATTTTTTGCTCGGTAA AAATCTCATCTTTTTGTCTAGATGTCTCTATTTATATATTAAGTATAAAAAAGTAAATTGTATTTACCTCCCTTCAGCGA AGTTTAAATTACATTGTCCTGTTCTTATTTTGAAAATTACACTATGCTCTCCTTAGAGATGAATACGAATAGTTTAATCT ATTTAATGTAGACACTAGACAAGCTTCTTATGGCCATTTTTATAATTATGTCTATTTGTGATTTTCATCATCATAAATTT ATAGTTTTGAACCTCTATTATCAGTTGAGAGTTGAGGCGTTAGAAGATGAAATACATATTTTGGAAATTTAGAATTCTAT AAATATTAACAAAATGTTCAAAATTAGTTGCTATTGATATGGAAAGTTGTTAAGAAAAGTAGAATTTTCATCAGAAGAAT CATTCACCACCAGTAAGAAGTTTGTTTATGTTAAAATGGATTATACTGAAAAATGTTCATATCTTGGAGAAAGGGAGTTT ATGTTTCAAAATAAAAAAAGAGGTAAGTATGATTTAAACTTTTCTTAAAGGAGGGGAGTATAATTTACCTTATAAGAAAA GATGACAAGTAAACCCTTCTTTGTGTTCTACATTGTCCATCAGTCAATGTTACTAAATTTTAAATTCTTGTGGAGAATGC CACTGTGCTTCTGGATACTCAATGTCAATACAGGGGGATTTGAAGGAATTAGATGGTCAATTAATTTTGACACATAATAT GATTTCATTATAGCTTCTGCTGCTTAGATCCATGGGCCTATTAGCATAGATGAATAGATGACTAGGAAATTGTTAAGTAT ACTGAAACACTTTCAATTGAATAAAGAGTAAATTGTATACAGATCGTTGTATCTTGGACTGTGACAGCACATTGAATATT GTTTTGCCTTATGTTGCCAGTCTCTGTAAGTTGATAATGTGAGCTTATAGCACAATCCAGATTCTTCTTAGAATTAAGAA AAAAAAGCTAGATAAATGGGTGTTGAAGTTTAGCTTATGATCAGGCAAAGTGGCATATTTAGTGCATGCTTTTCTTACTG GGGTATGTTTTTGGTTTAAAATTATCACTGACCCTTATCATTGGGTGAATGTTTAAAATTGACATCAGTTATCTTGTAGA TGACACAATTTTTCTTTTGCTTGAGCAGGAAGGCAACCAAGGGTGGCAGAAGAGTAATTGCTCGTAGAATAGCCAAGGGT AGGTCAAGGATTACAGCTTAGTGTCATTGACTCTTGGATCTAAAGATTCAATGTAGGAACTTGGTGCACTTTATGATGTA AAGTCTGCTATGCGCAAATTTTCAGGCAACTATAGTGTATGGATGTTATGATTCCCATTTTGTCTGTTTTGCATTCTATT CGATTTCAATAATATGACTGTGTTTGATGTAGTATAAAATGAAGGGAGGATAATGGAGCGGTAAATGTTTTATCGTCAAC CCTACCGAATCCAACTCATTGGTTTCATACGAAGAATTTCAACTAAATCTTTTAATTTCTTATTTAATTGTCCAACATGA TGTTTATGACACAGAATTAAACACTGAGGAAATGTAACACACCCTAAGTCTGTAAGTGGGGGTTTATTTTCCAGCTAATT GGTAAAAAAATCCACAATAATTCCCCGGCGCTATTTAGACAAAATTATGTCTTCCACTTCATTTCTGTACATTTCAAGAC ATTGTCATCGTGTATTGCCCAGCAATCACAGTTATACATGGTAGAAAACTTTTGCTTAGGTTAAAAATCTTGAGACTACG GTATTGCACTGTCACAGCTTTTGGATCTCTAAATATTGTGAGATTTTGGACGAGTTAAGAGTTTTTTCCATTTGGATGAG CCCTAAACAATACTGGAAATTCATATACAAGCAGTTGCAAATGCAAAAATCAACTAAGTTAATATTTATGATTTATGAAT ATTCCATTTCAGCACCAACACTTTGTGAAGTCCCTATACAAAGTGTAAATCCAAACGTGATTCAACTTATTGGAGACCGT GCTTATGATAGAAGAGCTTGCTTCACGAGTACTTGATGAGTACTTATTTCAGCTGTTCATGTATGCACCTTATTCAAATG TCATTTGTTCAGCTTCATGCCTAATGGATTCAAACAGTGGGGAAGATAAGTAACGCTCTCCAAAACTGGGAAAAATTGCC TGCACAGCAACATGATTCAGAATTTATATTAACTAATAATATTTTGTAAATTCACATCACATGCATTGGTATCAGTATTA TGGATTAGAAACTTACAACAATTAGCTTTCCTGCATTTTCTGGTCTCTTCCCCAATTTTATTGCTGCTGCTGCTGCAGCT CCTGATGAAATTCCCATCTGCACAAGGCGTTGCATATTTCCAATTATAAATGCAGAAAGTTCATATTTAACCAAACTAAT TAATCAATGTATTGAATACTTGTAAAGTTAACAAGTTATCCTTGCCATACCAGTAAACCTTCTTTCAAGGCTAGCATCTT AGCAGTTTCTATAGCTTCTTCACTTGAAACCTGCAGCTCATAAAACCTTGTTGTAAGTTTCTAATCCATAATCCCTTAAT AGAAAATATTAAGGTGCATCATGAATCAAAGATTCAGAATTAATTAGGTTGCATTTTGGCCAAAAAAAAGAAACAAAGGT CTCATTCTAAATGAAAGGAGATGGCCAGTTTCTGGATCAAAATTGAAAATTGAATACTAGCGTTGAGTTACCTGAATAAC TTCATCTATGAGATTAACATCCAAAATTGGGGGAATGACACCAGCACCAATCCCTTGGATTAGGTGCTTGCCTTTGACAT TGAAAAAGGAAAAACAAATCAGTAAATAGCCTCAAAGTAGTTGTCTAGTGAGTTGCTCAAAATAAAGCATGATAATATCA CACCTGGCTTTCCTCCATTCAAAACTGCACTTTCAGCAGGTTCTACACCATATACCTAGGGGGAAAAGCATCGTATACCA TCAGTTCATATCAAGAAAAACTGTTCACACAATCATTCCCATCCCAGACAGTATGCATATTGGTAATAAAACAACCTTGA TCTCTGGGTTTCTCTCCTTGAGGAAAGTCCCAGCACCTGTTATTGTTCCTCCAGTTCCTATCCCTGCCACGAAAACATCG ATTTTCCCTCCAGAATCTCTCCATATCTCAGGGCCAGTGGTCTCATAATGAATCTACAAGGGTGTGAAATTAATTAATCT GATGCAATCTTTCTCAACCCATTAACCAAATTAAGAAATATCTATGAATGATAAGAATACCTTGGGGTTCGCAGGATTTT CAAATTGCTGGAGCATATAACTACCGGGCGTCTCAGCTACTATCTCTTCTGCCTTCTGAAAAACGCCGTCAACTCCTTTG GCAGGGTCTGTGAGATATACCTCAGCTCCAAAGGCTCTCAGTATAATTTTTCTCTCAAGACTCACATAAGATGGCATAAC CACAATAACTTTATAGCCCCTCAATGCTGCTATGAATGCCAACCCTATGCCGGTGTTACCACTTGTAGGCTCAACAAGAA TAGTCTTTTCAACAATTGCCCAAAAAGATTAAACTTAGATCGTGTCACCATATCAACAATACAATAAGTGGCTGAAGAGG CCCTCACTTCAATATCATAAGTAGTAATATTGTAAAATCTCCATAAAACATGGCCATTATAGAATATGATGGAGGATTTA TAGTAAGGATTGATAAAGCTGTAAGGCATTATTGTTTTTTCAGCAAAAAGAAGATTACATAATCATTTATAGTTCATAAG GGCAATCAAACCTATATACATGCAAAAATCTTAAAATGCATTAAACTTTGTCAGGATTGTTTTAAACACTGTCAAGGACA CCTACAGCAATCTAAAAATATTCCAAACCCCATCTGTTCTAGCTGAAAACCACATCCAAGATACAATTTTAATCAGGTCT TAAATAAGATCAAAACTCTACAGCTTAAACATGATCTCATTCTGGTAAATCCAAATAGACCACACAGCTAAGAACCTTAC AAGCACCCATGCCTGATTTTCCCCTTCTAATCACAGTTGAAAGAAATTTAGTGATAGAATTTGAATAACATAGTTGTCCA TTTAAAATCATGTGAGTAGAAGTGTATGGCTGTCCTATTATAGGCCTAACGCCACACAAAAAACTCTAGATATGTATCTT TAACACGGCTAACCTTCCCACGCGTAATGAGGCCTTTATTCTCAGCATCTTCAATCATGCTCAATGCTATCCTGAGTGAG AAAAAAGAAGATTATCATTACAAATTCTTAATTGCAAAATGAGATTATTAAAACCTAAACTTCCAGACAGCTATCTAGTT TGGGAAAGAAAGGAATTCCATACCTATCTTTGACACTACCACAGGCTTGCATGTATTCGAGCTTAACAGCGATACGGGCC ACGCACCCTTCAACTATGTTCTTCAGATATACCATTGGGGTATTCCCAATTAACTGCACAATGAAGGAAAGAAGCTAATT ATTAACTTAGAAAGCTAAAGATAAATATAAAAATACAACAAGCTAATTATTAGTCAGAATGACAAAGTATTAATTACTTC AGTGACATCCTTCTTGATTGCACATTGTGACTCCATGTTAGCTACAATATCTGCAAGCAGGACCAAGTAAAAGACTAAAA GGTGAGAATTCAGTTGAAAAAGTGAATAAATTGCCAATCAAATAATTGATCACCAACAATTACAGGGTTTGCCTATTGGT TACCTAAAATCTGCAGTAACCAAGAAGCACCAGCAAAGGAAAATATCAGCACAGTTCAACAATCAATGAGCAGATATGAG ATGAAACCAAAATTGAAAACATGGAGATTAGAAAAGTAGAACTACCCAAAACTCAGCTTGAAAACTTGTCTTCAATGTCA ACAGGAAGCTGCCAAAGTGTAGAAGACGAGGAAGTTTAAGACACAAAAGAAGAATGAAGTCAATCAACTAGTTGTGGTTG GAATTTTTCCTAACATTACGGTTTTTAAACATTCAAGGGTTATATCCATGCACCATTTTTTTTCTCATCATCTAACATTA TCACATTTATCTTTTTTTATTCTTTATTTTAGTCAGCTTCTTCTTGCAATGTCTACTCTTGATTTTAGGTATAAACTATC CAATATTCGGTCACCATTCCAATGTTCGACTATTCCAGATTTAAAATTTAGTTACAGTTGTTTGGAGATTGAAATCGAGA GCTCTTTTCAAACATTCAGCCTCCATTACTAACCGAGCTAACGCGAGTGTCTACTCTTGATTGAGCTTACCCAACATTTT TTTTTTAATTTTATTATAATAGCATCTTCCGTTTGTGATACCTTTTTGTCTCGACAAAAAAAATGTCACCTATTTGTGTT GATGAAAAGCTGTCATGTTTTCTTTTCTTTAGTTAAAAAATACCACTTGTAGGATGCCTTTTTATTTTCATTTTGAAAGA AAAAATTATTTATATTCATCTTTTCAGCTGAATGTTATTTATGATTTTTTATAATGATTTATATTACATCATCATATGGC TTTTTAGAGGATAACACCATAGAAGTCCCAATCATTGTGTGCTTCCTAGCAATGAATGAACTAGTCATCCTTTCATCACT ACCAACAAGCATTTTGGATCAGTTTGTTTTTAACTTTTCTCCTAAAGCATTTCTTCCGTTTGGATGGGCTCAAAACAATA CTTGAAGTTGAAATTCATATATAAGCAGTTGCAAATGAAAAAATCAACTAAGTTATATTCATGATCTATGAATATTCCAT TTCCGCACCAGCACTTTGTGAAGTCCCTATACAATGAAGTGTAAATCTAAACATTATTCAACTTATTGGAGACTGTGCTT ATGATAGAAGAGCTTGCTTCACGAGTACTTGATGAGTAGTTATTGACTTATTTCAGCTATTCATGTATGCACCTTACTCA AATGTCATTTGTTCAGCTTCATGCCTAATGGACTCAAACAGTGGTGAAGATAAGTAACGCTCTCCAAAACTGGGAAAAAT TGCCTGCACAGCAACATGATTCACAATTTATATTAACTAATAATATTTTGTAAATTCACATCACATGCATTGGTATCAGT ATTATGGATTAGAAACTTACAACAATTAGCTTTCCTGCATTTTCTGGTCTCTTCCCCAATTTTATTGCTGCTGCTGCTGC AGCTCCTGATGAAATTCCCATCTGCACAAGGCGTTGCATATTTCCAATTATAAATGCAGAAAGTTCATATTTAACCAAAC TAATTAATCAATGTATTGAATACTTGTAAAGTTAACAAGTTATCCTTGCCATACCAGTAAACCTTCTTTCAAGGCTAGCA GCTTAGCAGTTTCTATAGCTTCTTCACTTGAAACCTGCAGCTCATAAAACCTTGTTGGTCAAAACATAATCCCTTATATT AGTATCTACAAGAGGAAACATTTCATAAAACATTAAGTTACTTCATGAATCAAAATTGAAAATTGATACCAATGTACTAG CTCGGAGTTACCTGAATAACTTCATCTAGGAGATTAATATTCAGAATGGGGGGAATGACACCAGTACCAATCCCTTGGAT TAGGTGCTTGCCTTTGACATTGATAAAGGAGAAAAAAAAATCAGTAACCAGCCTCCAAGTGGTTGTCTAAAGAGTTGCTC AAAATTTTATTATGTATAACGACATCTGAAGGAAAAATACATTCTAACAGATCAAATCAATAACAAAATACTGACAGAAA AAAAAGAAGAAAGAACAGTTTGATATTAAGAATTTAAGAATACTTTTCCTGATAGACAATTCAAGAAACAGTCTACAAAA TAACAACCACACTTGAAACTTGCCATTTTTCACTGTACAGCCTAATCGTCACTTATTCTCATGGAATCGAGAACCATACT CCAGGTAATGGTATGGTTATCTGTTGGGAAATAATCTGTTGGGGAAGATGCTGCAACACTTGGATTGATGAAGATGTTGA CGACGGAAGCACTTGAAGATTCAAAGCGAGCACTAACCTTTAGGTTCAATTCGCCCCCACCAATTACTGTGTATTGGATG CAAGTGAGAAAACCGGTGAATTCCCTTCAGGATACTTTAAATTCCTTGATGTGGTTTGCACTAACACACCAAGCGTATCT TTGACAATAGTTTACAGAAGTATGATTCCCACACTTCACTCATGCATTAGTGAAGTGGAGGATGATTTAGTATAAAGTAA ATGGAAGAGAAATTGGCCAAAATGAAGACCAATTTCGTGCATATGTTCTATCTCAGTTTTCTACCCAAATATCTCTTTAT ATAGAGATATTAACATCCCTTGGTGAAGAG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0215300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCCAAGACGCTTCTGAGAAGTGGATCTACATTGCTGAATCGCTTTTCAAATTCAAAATCGCTTCTCAACCCAAA TTTGCATCCCAATCACCCTCTTCCTCAGCTATTCCAAATCCCACCCCTCTCTAAGCTCCCCAGTTTCCCCCAAAACGACG CCGATTCACCCAGCAAGCTTCTCGCCTCCCAAGGGTTCCTCTACCCGTGTGGCCTCCCTGATCTCAGCTTCTTCCTACCT CAAGCCACAGTCGATGTATCCTATGAGTGTCCTTCCAATGAAGAAGACCCTATGCTTTTATTCCCCAAAAGGAGCTATCA ACCCAGCACTCTCCGACGAAAGCGGGTTCATGGATTTTTTGCTCGGAAGGCAACCAAGGGTGGCAGAAGAGTAATTGCTC GTAGAATAGCCAAGGGTAGGTCAAGGATTACAGCTTAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0215300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASKTLLRSGSTLLNRFSNSKSLLNPNLHPNHPLPQLFQIPPLSKLPSFPQNDADSPSKLLASQGFLYPCGLPDLSFFLP QATVDVSYECPSNEEDPMLLFPKRSYQPSTLRRKRVHGFFARKATKGGRRVIARRIAKGRSRITA

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14503:SF8 View details on PTHR14503:SF8 Search for proteins/transripts with this domain View external data on PTHR14503:SF8	4	145	142	7.1E-47	–
PANTHER	PTHR14503 View details on PTHR14503 Search for proteins/transripts with this domain View external data on PTHR14503	4	145	142	7.1E-47	IPR000271 Show description in modal box View details on IPR000271 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_00391 View details on MF_00391 Search for proteins/transripts with this domain View external data on MF_00391	102	145	44	13.197	IPR000271 Show description in modal box View details on IPR000271 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00468 View details on PF00468 Search for proteins/transripts with this domain View external data on PF00468	103	145	43	1.8E-18	IPR000271 Show description in modal box View details on IPR000271 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01030 View details on TIGR01030 Search for proteins/transripts with this domain View external data on TIGR01030	103	145	43	1.6E-15	IPR000271 Show description in modal box View details on IPR000271 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003735 View details of GO:0003735 AmiGO InterPro QuickGO	Molecular function	Structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.	Subterm of View details of GO:0005198
GO:0005840 View details of GO:0005840 AmiGO InterPro QuickGO	Cellular component	Ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.	Subterm of View details of GO:0043232 View details of GO:0044444 View details of GO:1990904
GO:0006412 View details of GO:0006412 AmiGO InterPro QuickGO	Biological process	Translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.	Subterm of View details of GO:0034645 View details of GO:0043043 View details of GO:0044267 Part of View details of GO:0010467

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0215300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi5g1v0215300.1