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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0218800 |
| Transcript ID | LotjaGi5g1v0218800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|C0JP34|C0JP34_LOTJA Putative basic helix-loop-helix protein BHLH26; Found in the gene: LotjaGi5g1v0218800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52498072..52500453) extracted from Lotus japonicus Gifu genome v1.2.
TATATGCAGTGCTATCTACCTATAATAAGTTAATAACTGATTAATTTAACGATGTAATGTAAGTATGCAGCGATAAATCC ATTTCACGTGCAGATCACTGTCCATTCTTGTATCCTTTATAACCTCAAAAGGCTCTTCACTAAGAGGATCCAACACTTTT TGTTTATGTTCATTTTCCTCCTTAAAATTCTATGTTATGTGTTTGCCTGAGGCAGAGAGAAACAGAGAGATGGCACTAGA AGCAGTGGTGTATGATCCACAAGCACAAGACCCTTTTGGTTATGGATTCAAAGACTTGTACAACTGCAACTTTCTGGCTG ATACTACCAACTGGGGCTATGAAAAACTCAACCTTGAGAAAGATGATAAGCAAATAGAGAATTACCCTTATGGAGATTGG AGTAGCTCCACCACCTCTTCAATGTTACCCCACATGAATGAGCTTCAAGAAACCACTGACCCCAGCAACACTTCAAATTT TGCTTCAGCTAGGCCTAAGAGGCGCAGAGCCAGAAGTAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGACTCACA TTGCTGTGGAGCGAAATAGAAGAAAGCAGATGAATGAGTATCTCTCTGTTCTTCGCTCTCTCATGCCAGAATCATACATC CAAAGGGTACTTCATTACTTGTTTATCTCTTTCTTTAAAGTCCAAATCAAACCCAAAAATTTGTTCTCTAATGATGATGG TTTGTTCAGCCTCTACATGTTTGTTTTTATGATTTGTTTTTGTGTTTTGGTTGGTGAATGCAGGGTGATCAAGCTTCTAT AATTGGAGGGGCTATTAACTTTGTTAGAGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTAAGAAAGAATCAGAGGGGA AATCTGAGAATGAAGCTGCAACTGCAAGCATGCCTTTTTCTGAGTTCTTCTCTTTTCCCCAATACTCAACAAGTGCTAGT GGTTGTGATGATTCTGCAGCCATAGGTGAGCATGTTGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGT GGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCAAAGCAGCTCTTAAAGATGGTCACTGGTTTGCATACTA TGCGCCTCACAATCTTGCACATGAATGTGACAACAACTGGTGAAATTGTCCTCTACTGTCTCAGTGTTAAGGTTTGTCTT TTACTTTTTTTTTTCAATTTTAGTTTGCAGCCTCAGCTTATTATGGGGATTGACATGTTTGGATCAATTTATTTTTCCTC TCAGAACCAATTATGATATCTAGAAGCTACTCAGAGAAGCTTTTCTCCAAAGTTGATTTCGACTTTAGAATCAATTTTAG AAGAATTTCATGCGCTGAAGTTCTTTCCTTTCCCATGTCTTTGTGAAAATGCTTAAAGTGAAAATGCATTGAATATTTTA TTGCAGGTAGAAGAAGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTATACCAGATGTTGGATAGGATTCA CCAAGAGGCAATGCTGAATTAAGATCCAACCTTGACCAAATTTGCCTCATTTGGTTTTTTTACCTCATGACCTTATTCAT GCCATGGAAGATTATCACTCTTATCTTTCAAGATGTACCTAATCATTGCAAAGTGATTTGTTCATCCTTAGTTGATCTAC TGATGGTGCCTTGCTGTGGGATCCTTGGAGGAAGTTTTTTTGGTGTATTCCTTCTTATGTATGTCTTCATAGCTAGCTCC TTTTGATCTCTCTGCTTTTTCTTTATGATCTGGTAGAGAAGGTTGTGGTATGTTATGCTTGAGATATATCTAAGTTCTTG GTCAATTCTGCCTACCTTGCTCTGAAATTGGTAGGTCCTGTCTACCTCAACCATTAAGCCAAATTATCAAGCTGAATTTG AGATTTTATCAAAATAACATTGAATGAAAATGAGAGCCATAGATATTGGCTATTGTCACATATTCTGCAGTCTATTATGT TGTTTGTTATATTTTATTTGGTTGTCATAGTTTAATAAATGTATGCTGACAAATGATAAAAACCAAAAGCACCTTGATTC TTGTGATCTTGTCTCTTGACAATGTTTGAAATACCATAAACATGTTTAAAAAGTTTATATTAGCATGTTTGTATTATTTT TTCTTTCCTTAAAAATCAATCATGGTACTTAAAAAGTTACGCACATAAACTTCTTGTCAGAGTTGGTTTTGGCTTTAGAA TCAATTCTGACACTCATCACTAATCTATATATCATTGATGCAAGGAATGAAGAGGCTTAAGAATCCATAACTTTTTAATT GATCATAACTTATAAGCTTTCCAAGATTAACTATCTAATCTGAACTGCTTATCGAAAAGAAA
CDS sequence (LotjaGi5g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTTGCCTGAGGCAGAGAGAAACAGAGAGATGGCACTAGAAGCAGTGGTGTATGATCCACAAGCACAAGACCCTTT TGGTTATGGATTCAAAGACTTGTACAACTGCAACTTTCTGGCTGATACTACCAACTGGGGCTATGAAAAACTCAACCTTG AGAAAGATGATAAGCAAATAGAGAATTACCCTTATGGAGATTGGAGTAGCTCCACCACCTCTTCAATGTTACCCCACATG AATGAGCTTCAAGAAACCACTGACCCCAGCAACACTTCAAATTTTGCTTCAGCTAGGCCTAAGAGGCGCAGAGCCAGAAG TAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGAAATAGAAGAAAGCAGATGAATG AGTATCTCTCTGTTCTTCGCTCTCTCATGCCAGAATCATACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCT ATTAACTTTGTTAGAGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTAAGAAAGAATCAGAGGGGAAATCTGAGAATGA AGCTGCAACTGCAAGCATGCCTTTTTCTGAGTTCTTCTCTTTTCCCCAATACTCAACAAGTGCTAGTGGTTGTGATGATT CTGCAGCCATAGGTGAGCATGTTGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGTGGAAAGCCATGCA AATCTCAAAATAAGATCCAAGAAGCGCCCAAAGCAGCTCTTAAAGATGGTCACTGGTTTGCATACTATGCGCCTCACAAT CTTGCACATGAATGTGACAACAACTGGTGAAATTGTCCTCTACTGTCTCAGTGTTAAGGTAGAAGAAGATTGCAAGTTGG GATCAGTGGATGATATAGCTGCAGCTGTATACCAGATGTTGGATAGGATTCACCAAGAGGCAATGCTGAATTAA
Protein sequence (LotjaGi5g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLPEAERNREMALEAVVYDPQAQDPFGYGFKDLYNCNFLADTTNWGYEKLNLEKDDKQIENYPYGDWSSSTTSSMLPHM NELQETTDPSNTSNFASARPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYIQRGDQASIIGGA INFVRELEQRLQFLGAKKESEGKSENEAATASMPFSEFFSFPQYSTSASGCDDSAAIGEHVGGVQSGIADIEVTMVESHA NLKIRSKKRPKQLLKMVTGLHTMRLTILHMNVTTTGEIVLYCLSVKVEEDCKLGSVDDIAAAVYQMLDRIHQEAMLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 314 | 303 | 4.4E-139 | – | |
| PANTHER | 12 | 314 | 303 | 4.4E-139 | – | |
| MobiDBLite | 83 | 113 | 31 | - | – | |
| MobiDBLite | 83 | 98 | 16 | - | – | |
| Gene3D | 112 | 193 | 82 | 4.9E-11 | ||
| CDD | 115 | 172 | 58 | 9.11598E-14 | ||
| ProSiteProfiles | 116 | 167 | 52 | 15.421 | ||
| SUPERFAMILY | 116 | 180 | 65 | 6.41E-16 | ||
| Pfam | 117 | 168 | 52 | 1.0E-9 | ||
| SMART | 122 | 173 | 52 | 1.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0218800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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