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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0219900 |
| Transcript ID | LotjaGi5g1v0219900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G10250.2 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1; TrEMBL-Plants: tr|K7N580|K7N580_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52631559..52639991) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGTCATGATGCTCCAATATACTGACATACTTAATTTGTGACCACTAACCACTCACTAGGCCTAGCAAGTAGCAACT TGTGAAATCACTCACTCCTTGTTTTGCATTTTGCCAACAGAGAGAAACAAATTAATCCAGTTCAATTGTTGAAAGTTGAA ACCAGTTGAAAAAGCAATAGCATTGTTGCATCAATTTCAAGCATAACTCAGTACAGTACTAATAGACAGTATATTCTCAT TCATTCTCATACTATTCAAGAATTGTTGAACCAAAGAACAGAGTGACAAATCAAAAAATTCATGCTCTCAAGTCTCATCT AGACATTCTTCCATTTCTATTTCGATTTCGATTTGTGATGGCAAATTGGGTAGCTGGAGAACCAGTCATAAGCTTCTTCA CCCAAAATTTCACATCCTCTTTACCAAACCCAGAACCTATCACCAAAACAATCCCAAACAAAAACCCTAAAAACCATTCC TTAATAGCTTTCTTTCGAATCAGAAAAACCCCAACAACACAAAACAACGACGCTTTCAGAAACAGGTCCATCTCTGAAAC CCTCCACGACCACCAACCCGCAACGCAGACCAACGCGAACCATGCTAACTGCTTCTTCCCCCTTTTCCTCCTAGTCTGTT TCCCTCTCCAGCCACCAACGAGGCTGTGAAAACCGTTGAAATCGCCGCGCGCGATTTCGCCGGCGAGCGAGTTGAGGGGC TCCGGCAAGATCTTGAGGTTGAATGCGACGGTGGAAACCAGTTGAAGCATCTTTTGGTTTGATCGTTGGGACCACCCACG CGGCCTCCTGGCGCACACGATGGTTGGGTGCTGCCGCGAAATGCGAAGCGAGGTGGGTTCGGAAATCGAAAGAAGGAAGT GGGTTCTGCAAGTGTAGGGTTTCAGTGTCGCCATTGTCATGTGGTGGGTGGTGAGTGGTGACCGTTGGCTTGGTAAGAAT GGGAGAATAGGTACTTGTTCAAACTTCAAATTCTCTGTTCTATGTAGGAAAATCTGGCTGCACTTGTTTTGAATTTCTTT GGGTGTATAAATGGAATTTATTTGATAACCAGATAAATAGTGCTAAGAATTAATAACTCAATGGTTGGAGTAAAATTTAT AAAAAAAATGCTTAAGAATTGCTTAAGAACCTGTGGCACCACGAGCTTATAAGAATAGTGCTAAGAACAAAAAATTAAGA ACCTAACATTGAAGATGTTATTTGTCTTATACATTTTTATGAACAATTGGAAAGTTTCACAACTAAGAGAAAGAGCCGTC GAAACGACCGAAGCGAGGTCCATCGTGCAACAAAACTGACACATTTACTGAAAATAATAGCAAAGTTATGCACGGGTAAC CATCATCTCAAGAATCGCTTAGGAAGACTTCGTTAAGGTCTGATACCTTGATTACAACTCTCACCATACCTATACATACA AGTTTGAACGTTCATTCACGTATGCATTACTCATTTTGCTAACCCATTGTTTTTCGAGGACTTTGAGCTCCTCTCTCTAT GCTCAACTTCTGACTTGAGCGCGGAGTGCCTTTAAAGGCACCTCCCTCCACCGTAGTATCGTGATGGAAGATCCATCGAG GGGGACCGCACGACCGGAGACTGAGAGCCTCCTCTCATTATTCCGGAAGAACAATACTAAAGATTGTATGTGGTTTTTAC TGAACACAAACGAAATGTAAGCTTATCAAGAAAAGAACATATTCTCTCAAACTCGTCTCAATTCTCCCATAAAACATAGA TTTAATAAAATAGATCCCTTTCTCATGCTAGTTGCACAAACTCTAAATTAGTTCTGTATGCAAGACTAACTAAACAGACT GTTATTAATCAACATAAGAATTTGATCTGGATTCCTCGTCAAATTTCCAACTTAATGGCTTCCTTCCCTGCTTCCCACTT TGGAGGAAGACAAAACTTTATGCTTCTAAACACCTATACCAGCCATAAACAATGTTGCTCTCTGCCGGTATTGGTCACAC AATCACTAGAGCATTCCTCTTTAATGACATTAAAATTAATGAAAGATGAGGTGCAAATTTTTATTGATGTGTCAAAATAT AATTGAAGGGGAGAGGCTTTTCATCACATGTTTTTTGGCTGAGTTTTCTCCATTTAATGCAATTGCTTTGTATTCTTCAG AAACCCAAAAGCCAGAATAATTTAGCCATTTAACAAATGATGACAAAATAAAAGAATATAGGTTGTAGGAACAATTTTCT GGCCACAAAATTCATGAGGCTAGAATCAGCTCTGGTTAAGAGGAGTGGGACATGTTATTGCTTTGATACAGCATGGAAAT ACCTTCTTAATGATGAAGGCGACATAGACAGAGAAGGGTGGTTCTGCGTTTCTCAATTAGTGGATGAGATTGTAATGCTG ACTTAATGACATTCTTCTAGGGTCTTGCATCCAATGATCTGTCTCCTCTCATATTCTCCATTAATTCCATTTGATAAAGT GTCAAGAGATGGTAAAAAGCAACAAACTCTCTTGAATGTTATAAACACTTTAATTATAAATAAATATATGTAAAGTGATC AAGTGGATGACATTACATTGATTACAATACAATAAGGATAAACCATTGATTACTAATTAATCAAAAAGTGCATAGGACAC TTTTTCTGTCTATAAATATGTCCTCCACATTCCATACTCTTTACCAATTTCTTTCTGTATAATCTCGCTCAAGCTTGAAG AACAGGTTTCAGTTGCCAAGGCTTGATAAAGTGATCATGGGAAAGAAAAGTCTTGAATGTGAAATTCCCTTGGGTGGTAT TAGTATAGTAGATGGGGTGAAGCGTAACCGGTGTGTGGTGCTACCAGCTAAAGTTCCTATAGTTGCTGATTCCTTAGAAA GGACAAAACAAAACTGGTAATTAAACACCTACCTCCCAAGAAAAAGCCAAAAACTATATATGAATATGATCATTGATTTC TTGCATCATAATTCTCTTCATGTGCTTCTCTTGTGCATAACACAATTTTTAGCCTATACTGGCTGTACTCTGCATCTGAA ATATACTTTGTTCCATTTATTTGATGCAGGATTGCTAGGGCGAATTCCACTACTGATTTAATCATACAAGTTGGTGATTC CAGCTTCCACTTGCATAAGGTAAACAAATTACTTCTTTAATTCTCAGGAAAAATGCTACTTTTTTTTTGTCTTTTCTAGT TCTTTTTTCATACTATTAAACCATTTTGTGGGATAGGTTAGGATGAGGTTTATTTATCCCTTATCAGACTATATGCTAAA AATGGACACATTTACTATTCTTGCAATTTTAACAGTATATGGTTTTGTTGATTAACAGCTTGCCATGGCCTCAAGAAGTG AATATTTGAATAGGCTCATCTTTGAGAGGGAAAGCAACAGAGGAAATGCAGGTGATAGCCTCAAAATCCAACTAAAAAAT CTCCCAGGTGGTGCTAAAACCTTTGAACTAGTAGTGAAATTCTGCTATGGATGGAAATTTGACATGACTGCAACAAATAT TGCCCCATTATACTGTGCTGCACATTTCTTGGAAATGAGTGAAGATCTTGTGGAAGGAAATCTCATTTTCAAAGCAGAAC CTTTTCTAACCTTCCTCATATACTCTTCATGGAAAGACACTTTTAGAATACTCAAAAAGTGTGAATCCATTTCCTCTTGG GCCAAGGAGCTGCAAATTGTGAAATGCTGCTCAGAATCAATAGCTTGGAAAGCATGCACGGAATCAAATGCTAAAACCAC AGGACTTGATCCTTGGTGGTTTGAAGATGTTTCGGTTCTACGCATTGATCATTTCGTTGAAGTGATCCAATCTATCCAAA GGCGCGGAGTCAAACCACAGCTTGTAGGTTCTTGTATAGCAAATTGGGCAACAAAATGGTTTTCTCAATTCACTCTTGGA ATTGATAAGGTGACACCTAAAGACATAACACTCCAGTTACGAAAAGTTTCAACTGAATGCTTGATTAAGATGCTTCCTGT TGAAGAAAACTCAGTCACTTGCAATTTTTTGCTACAACTGTTAAAGGCAGGGATGGTGTCCAAAATCAACCCTGCTTTGT TGTGTGTTGTAGAAAGAAGGGTAGCCTCAATGTTGGAGCAATGTCGCGTCTTGGATCTCTTGGTTAAAAATCAAGGAGAC CATGAATCCTTGTATGATGTTGCTGTTGTAGTTAGGGTGTTGCAATCTTATGTTTGCAGCATGTCGAGTAATCCTGCAGC GAAACTCCACAATGTTGGACGGTTGGTGGATGGTTATCTTGCACAAGTTGCAAGGGATGAGAATCTCACAGTGGAAAGTT TCATTTCACTTGTTGAAGCATTGCCTCAAAATGCCAGATTCTGTGATGACAGCCTCTATAGAGCCATTGACATGTTCCTT AAGGTAATTACTATCTAGATATATTATATCATTTTCTAAATCTCTAGCTCAAGATCTATGTGTGAAATGTGAATATTTGG TTCCACATTTGCAAATGTTAGAATTGATTTTCCATTGTCAGAAACAGTTATTTAGTGTTTAGATGTTTCCTTTCACAATT GATTCTAACTCCAAAATCAATTATGGAATGAAATTACAAATACTAACCTCTGCAATGGATCAACTTCTCTTTCTTCAGAA TCAATTCTAAAATCTAGAAACTTCTCAACATAATCATTTACATGATTTCATGATTGGATTTCAATTACAAGTCACTTTTC CTCACTCTTACCAAAATCAATTATATATCTGCAATCAATTCTGACATCAAAATACACATTTGATCAATTACTTCTTTTGT ATTCATCTCTATATTTACATGGTTGAGCACTAAGACTTCATCCAAATTTTGCAGGCACATTCCAATTTGACAGGAGAAGA TCGATCAGGTGTGTGCAGGGTCCTGGAATACCATAGATTGTCGCAGGAAGCACGTCAGCATGTGATGCACAATGATAGGT TGCCCTTGAAATTAACAACAAAATTTGTCCTTCTAGAACAAGTGAACATGACAAGGTCAATGACTAATAATGGATCGAAT TACCGAAGGACTAATACTCAGACAACAATCAGAGTAAGCAAAGATTTTGAAAAGAGACAGATAAATGCACAGGAAATAAA GATGATGAGCAAAGATGTTGAAATGATGAAGTCACAACTCTTGGAACTAAATACCTGTAAAATAAAGCTCCAAATGCAAC TGAAGAGATGCATTCGTTGAAAGAGAGTTTGTTATGTAAAAAGTAACACTTCAACATGAGGATTAAGGAGCACATTTTCT CATTTTCTGTCATAAGCTGATTAGAAATTTTAACACAGTATTACCTGCTTGTCCTACTTCAGTGAATAACTTCTATTCCT CCCCTGAAACAAACAAAAGAGACAGGTTATTGTTAATTTGCAAAAAACTATGATAAAAAAAAGGAATACAATCAAATGAA ATGAAACGAAATTAAATTAAATGAATGAAAAGAAAAGAAAATTAATTAAATTGTTTAAAAATTTATATAATAAAATAAAA TTTAAAGTCCTCTTAAATAAAAAAGAAAAAAGAAAAAGAAATATTGACATATATCAATAAAACAAAAATGAAAATCAATG ATGTACCACTTGAACAACCACCGCTGTGAGAGTTAGTCCACCATAATGTGGATGTTCCCGACTCGTCGGCTCGAACATGA TTGTCTGATTGTCTCCGAATGAGAACATCTGCCTCGCACCAAAAAAGAAAATAAAACAAAAATGATCATAGTTTAAATTA AACAATAATATATCTTATTTCTTAACTCTCTTTCATTCTTCTTGTTCAATCTCTTTGCACCGTCGATCCCATCATTTGGA ACGAGCTTGAAAGGATGGAAGATGATGCAGCAGCAAGCAACAAATGCGATTCCAGTAGCTGTTGCCCAATCTGCTTGGGA CCATTTCTTCAACTTTCCTACCTCGACAAATGTTTTCGTAATAACCCATCTCTCTCTCTCTGTTCGTAATTTCAACCCTG GATATTCTTAAATTTCACATTTTTTGTGGGTTTTGATCCGAAAGCTTACAAATTTTTGCATTTGCAAGGGACCCTTTAAC GAATTATAACTGAAGAGCAATTGTTTGGTGGAAAAGGGAATAACTTGATTTATGATTATGGGTTTTGTTTGTATCGGTAA CATGATGTCAATGACTAGTTCAGTGTTGAATTGTTGCTTAAGAATTCATGTAGGCACTTGGAAAAAATCACTGTTGGGAA GAGTTTATATATCAATAGAAGATTTATTGTGTTCATTAGTTAAAATTTCATAAGCAATTAGAGCTAACTGAACCATGTTA CTGATGCTGCTATGCTATGCTTTCATTCCTAATGTTGCAGATGAGTTTTGCTTCAATTGCATTTTGCGTTGGTCCAAGGT GGCTGCTGGAAAGCACCATTCTCCACCTTCTTCTGTAAAATGCCCTCTTTGTAAGGTTTGGTTAATTCTGTCATTTTTCA ACTTCCTCAACACCATGATTTGTTTAAAAGAAATTCCGATTTACGATTTTTAAGTGATTGAAAATTTGCAATTTACTGCA TGCTAAATGTTTCCTAAGGATGTCTAATGTTGCAAAATAGTAGGATGATAGTTTGATTTACGATAGGTCAAGTGTGGTAG TAGAAGAAGATGGTGTCAAGTTTGGATAAAATGAACTACTGATTATATCTAATATGCAGACAGAAAACGTTTCTATCATA TATGGAGTTGATGGAAGTTGCTTTCAGCGTCATTATTTAAATACGGATGTTGAGGATAGGTTTGTCTCAGTTGTATTATT GAAGTTAGAATTTTGGTAGGATTATCTTTACATACTTTGCTTTTCTATTTGTGTGTGCAGTTTTGTCTTATCGAGAGCGC ACAGATATAGATTGCAATGCTATTACACTGAACAAGGTCTTTAACCGTTTTTCAATTAACAAATCTCTTGCTCAATATCT GTCTGTCCTTTGGTTTGTGCAAAATCTTCGTCAGTATTTACTTTGCTTTTAACTTTGTCTGAGCAGGTTTCTTGGACGAC TTATTCAATATATCGCAATACTGGAAATCTTCTAAGTACTATCATCCAAACTGCTGGCTTGAAAGTTGGTTAAGAAGGGA GATTCAAGCACTTATCCAGGTTAGTGAATTTTTCAGATTAGTGGTTTGTTGGTGCCTTCTCTCGTGTTAGTGGAAATTGT TTTGTCCTCTCTATTTTTCTCTCGCAATTGGAAAAGTATCCTGTAATAAAATGTGCTTTATCTATTACAGCATAAGGATT CACATTTTGTTGCATTTTCTTTAATTCCACTGTATGTAAGTGCCTTATTAGCTGTAATTTCTCATTATTTTGATTAGTTT TTGTATGGTGAAGGTGGAAAAAGGGGGAATAGAGGGAGGTCGTTATAGTGATTGATTGTCTCCCTTGACTAGTACTTACA TATTCTTGACTTTTACCTTCTTTTGCTTAATCTGCAGGAGGAGGATGTTGACATCATTGTGCACCATATCCTTGGTGTGG TTAAATCCTTTTCGACTAGGTAAGTTTCTTCATGCATTTTAAGTTGATTTATAGCATGTCTTTGATAAGCTTCTGTTTCC GCAAAATTAATTCTAAAACCAAGAAGCTACTCAATGAAGCTTTTTCCCAAAACTGATTAGGGCTTATAATCAATTGTAGA AGATTTTCCAAACATACACTTACCATTATTCGAGTGTGAAAAGTATTGATGGTTCAGTTTCTGTTAATTCTCAAACTTCC AGGAGAGAGCAGAGACACATAAATGATCCTGAAAAGAAACAGGAGGAGTTCAAGATGTCAGTCTCTGAAGCAGCAAGGCC TTTTCTCGCAGCAAGAACAGAGAGATTTGTATATGAGATTCAACTATTTCTTGCTTCAGGGTTGAACATTGAAGCTTATG ATGCAGTTTACATCCAACGATTAGGTTGGAGCTCACCTGGGGTAAACACTGAGGTTGATCAAAGTGAATTAATTGATCGC ACAACTGTGATTCCTTATCTGTACATATTTGATTATGACTCTGATGGAAATGAGTAGATTCATTTTTCTTTTGTTTTCTC CTTTATTTGTTGTAATTTTTGGATGATGAGATTGCTCCTGAATAGCATAGACAAAATTAGTCATATATAACAGATTTCTG GTGAGGATTGGGATCCTTGCCAGTTAGTGCGGGGGATGCAATTCTCCATCGAAAGGGTCTAAAGTTGCTAACATGAACTA TTTTCATGCTCAGATTTTATGCAGTTTTAAAAAGACTTCAGAGGTTTAATTTTCTGCCAAGAGAATATTATGTACTCAAT TTTAATTTGTCTCATTCCTTGTCCCAGAAATAAATTGCGTCATGTAAACATGAATATAACAATTATAATCTTACATGAGT GATTTTGATTTTTAACTGACATGCCATATTTTG
CDS sequence (LotjaGi5g1v0219900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCAAGAAGTGAATATTTGAATAGGCTCATCTTTGAGAGGGAAAGCAACAGAGGAAATGCAGGTGATAGCCTCAA AATCCAACTAAAAAATCTCCCAGGTGGTGCTAAAACCTTTGAACTAGTAGTGAAATTCTGCTATGGATGGAAATTTGACA TGACTGCAACAAATATTGCCCCATTATACTGTGCTGCACATTTCTTGGAAATGAGTGAAGATCTTGTGGAAGGAAATCTC ATTTTCAAAGCAGAACCTTTTCTAACCTTCCTCATATACTCTTCATGGAAAGACACTTTTAGAATACTCAAAAAGTGTGA ATCCATTTCCTCTTGGGCCAAGGAGCTGCAAATTGTGAAATGCTGCTCAGAATCAATAGCTTGGAAAGCATGCACGGAAT CAAATGCTAAAACCACAGGACTTGATCCTTGGTGGTTTGAAGATGTTTCGGTTCTACGCATTGATCATTTCGTTGAAGTG ATCCAATCTATCCAAAGGCGCGGAGTCAAACCACAGCTTGTAGGTTCTTGTATAGCAAATTGGGCAACAAAATGGTTTTC TCAATTCACTCTTGGAATTGATAAGGTGACACCTAAAGACATAACACTCCAGTTACGAAAAGTTTCAACTGAATGCTTGA TTAAGATGCTTCCTGTTGAAGAAAACTCAGTCACTTGCAATTTTTTGCTACAACTGTTAAAGGCAGGGATGGTGTCCAAA ATCAACCCTGCTTTGTTGTGTGTTGTAGAAAGAAGGGTAGCCTCAATGTTGGAGCAATGTCGCGTCTTGGATCTCTTGGT TAAAAATCAAGGAGACCATGAATCCTTGTATGATGTTGCTGTTGTAGTTAGGGTGTTGCAATCTTATGTTTGCAGCATGT CGAGTAATCCTGCAGCGAAACTCCACAATGTTGGACGGTTGGTGGATGGTTATCTTGCACAAGTTGCAAGGGATGAGAAT CTCACAGTGGAAAGTTTCATTTCACTTGTTGAAGCATTGCCTCAAAATGCCAGATTCTGTGATGACAGCCTCTATAGAGC CATTGACATGTTCCTTAAGGCACATTCCAATTTGACAGGAGAAGATCGATCAGGTGTGTGCAGGGTCCTGGAATACCATA GATTGTCGCAGGAAGCACGTCAGCATGTGATGCACAATGATAGGTTGCCCTTGAAATTAACAACAAAATTTGTCCTTCTA GAACAAGTGAACATGACAAGGTCAATGACTAATAATGGATCGAATTACCGAAGGACTAATACTCAGACAACAATCAGAGT AAGCAAAGATTTTGAAAAGAGACAGATAAATGCACAGGAAATAAAGATGATGAGCAAAGATGTTGAAATGATGAAGTCAC AACTCTTGGAACTAAATACCTGTAAAATAAAGCTCCAAATGCAACTGAAGAGATGCATTCGTTGA
Protein sequence (LotjaGi5g1v0219900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRSEYLNRLIFERESNRGNAGDSLKIQLKNLPGGAKTFELVVKFCYGWKFDMTATNIAPLYCAAHFLEMSEDLVEGNL IFKAEPFLTFLIYSSWKDTFRILKKCESISSWAKELQIVKCCSESIAWKACTESNAKTTGLDPWWFEDVSVLRIDHFVEV IQSIQRRGVKPQLVGSCIANWATKWFSQFTLGIDKVTPKDITLQLRKVSTECLIKMLPVEENSVTCNFLLQLLKAGMVSK INPALLCVVERRVASMLEQCRVLDLLVKNQGDHESLYDVAVVVRVLQSYVCSMSSNPAAKLHNVGRLVDGYLAQVARDEN LTVESFISLVEALPQNARFCDDSLYRAIDMFLKAHSNLTGEDRSGVCRVLEYHRLSQEARQHVMHNDRLPLKLTTKFVLL EQVNMTRSMTNNGSNYRRTNTQTTIRVSKDFEKRQINAQEIKMMSKDVEMMKSQLLELNTCKIKLQMQLKRCIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 441 | 441 | 7.8E-193 | – | |
| CDD | 1 | 83 | 83 | 1.44409E-25 | – | |
| SUPERFAMILY | 1 | 73 | 73 | 1.1E-6 | ||
| PANTHER | 1 | 441 | 441 | 7.8E-193 | ||
| ProSiteProfiles | 143 | 404 | 262 | 67.759 | ||
| Pfam | 144 | 379 | 236 | 9.4E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0219900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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