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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0221600 |
| Transcript ID | LotjaGi5g1v0221600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT5G27620.1 cyclin H;1; Swiss-Prot: sp|Q8W5S1|CCH11_ARATH Cyclin-H1-1; TrEMBL-Plants: tr|I1KBX6|I1KBX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0221600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52836076..52841169) extracted from Lotus japonicus Gifu genome v1.2.
CTGACTTTTAAATGAAAGACAAAATGAATGAATGTTAAAATTGAAGCAAACATTTAAAAAAACCCTCCCCTCTTTTTTCC ATTCAACCAAACAACGCGCAACAGCGCTCGCGGCTGCTACTCCCCTGTGACTGCGATTCAGCGTCTGTCCCCTTTTAACG TAATCGCTATTCTTCTAGCTCAGGTAACCTGTTATATGATTCACTCTTCTTACATGATACATATTTGTTTCCTGGTTATG TGAATTGCATTCAAACTAGTTGATTGATTGGTATTATTAGGTCCATAATAGTAATGGAACATTAAGTCTATGGTAATTGT TAATTTTTCTTATTGTTCTTTTGATTTATTGTTTATTCGTGTTGTCCTTGCCAATAAAATTCTGTGCTTTTCTTTTCAGC ATGAGCACTTAATGCTGCGTGCAAACACAAAAGAGTACTTATATTGCTGACCTGATTGTCTCTCAGCTTGAAGAATTCTA AGCTTCCAATCAATCATTGTTTGCCTTGTTTTAATTTGCGGGTAGTAGCTTCGTAAAAACACCTGCGTTAGGGTTTTTGA CGGGCCATGGCTGATTTTCTCACCTCTACCCACCGGGCCAAGTGGATCTTTTCTCCCCAGCAACTGGTACTTGTTTCGTT TCTGTCTTTCATTATTCATTTGATGCCACGATTCATAAGCACATTTGTTCTCCTGCTATCAAAGGCTGCTGATTTGATTG CCCGAGTTCATACCATTGTTTTACAAGTTGGGAGTTTCTAATTGTAAATTGTAATCATGCTCATGGTCATGGATGTTTTC AAATTTGTAAAATAGGTTAGGTGGATAATTATAATTTATTACTTGTAATTTTTATTCTCATATCTATTTTCGTTTTAGGT TGAGAAATATAAAGCTGCTAACCAGAGGGCCAAGCAAATCCTAGAGAAGGTATGCAGAGTTCCCTAATTTACTAGTCAGT CAATGCACTCCTTTCCTCTGCCTTCTATATGTCACTGTAAACTGATATGAATTTCACCCCTTTCTATTTTGCACATTTAT TGCTGTATATTGTGGCCTTGTGGGGAACTACTTTTCTCTTATTCGTTACTGGTATAATATTTCATGGTATCATTTATTAG TTTATTATAGTTATCTGGTTGCTGATTACTTTTTGTTTTTTGAAGTGTGGTGCAACTCTGATGGACGTAGATATCGATGG GACATTGTCGTATCCTGAACCCCAGTTGACTTCAAAGGATAATGGTAATATTAATTCTGGAAATTTGACACTTCCCCCCC TCAAATCCGCAATGTTAGATAACATTGTGGATTTTAAGTTTCTAATTGCTTTGAAAGCTTTTTATTCAGTTTTTGTCCCC CTTGGTTGTTTATATGAATTTCTATTTTCTAATGTTCACAAGGGTAGTATTTTATGTCAGCTGAAAAGCATTCTCGAGTA AAACCTCTAAGTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGCAACAATTTCCA CTTCCCTCATAAAATTCAGGTACGCAAGCACTTCGGATATTGTAAATGTAATTGTAAAGCTGTCTGTGTTAATAAAATGA TTATGGCAACGATGTTTTTCTCCAGTCATTTGAAATAGTTTATGATATACAGGCAACAGCCCTCATCTATTTTAAAAGGT TCTATCTGCAATGGTCGGTGATGGAACATCAACCAAAAAATATAATGTAAGATTTCCTTTAATCAATGTTAAGACCTCTG GACTAAGGATGTACCCGATTTGTTTTATTGACAATAATAAGCAGGAATTGGAACTCATTGGTCATTATGGTGAATTCGTA CATATTTAGTTGATTAATGTTTAAATTGTTTAGGATATTGCGCCTGATACATTGCTTGCTGGATGGTTTGATCATCAGTT TTCTCTTTTGATTATCTTTTTACCCCTTGAACTGGTTACTTATATTTTTTTGCTGTTGCTTGATTTATTACCCGAGTGCC TGTCGTAAACCTCATCAAAGCTAGTATTTGATTTGTACGATTTATTTATGTTTTAAAAAGGTTTTATTTACTTGTTAGCT TCTCATTAACTCCTTGAACATCTTACACAGGTTGACCTGTATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCAG CTGAGGAGCTTGGAAAGGGGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTCTATCAGGCATGGATA GGCCTCAAATTTCAAATTTGTATGTCTTTTTAAAAAAAAAAGATCAATGACATGAAACCCTTGTTTTGCAGAGTTTGGAA TTTGATCTTATTGTTTATGCACCATATCGATCAGTTGAAGGTTTTATGAATGATATGGAGGTTTGTCTGGTTGGCCTATT GTGGAATTTTTGAAATATTTAATTTATAATTTCATTTTTCTGTATCTCGAAATTAATTTCCAGCTTTCTCCCACTTTCAT TTGGATAAGTAAATATATGACTTGTCTTCTATTAACATTACATTTTTTAATGACTTCATCTTATAGGAATTTTGCAATGC TGGTGACGCCCAGCTTCAAATGCTCAAGGTACTTATTGCCCAACATAATTGTTGTTTGGCTGATCACATTGTTTTGGCTT TGGCTAGATGAAGTTTTTCGGCTTATTATTTTATATGTTGGCGATTTCTCCAGTGCCCCTCATTTTTTCCCCTGATAATT TGTGGTTATTATTTTTCCAAGATTGAGAACAGAAACCATGCACAGTCTAAGGCATTAGAATTGTTTTATTCTATGACTGA AAATAATTGTGAATATAGACAAACTAAATTGCACGTGGTGCAGTTTCTTTCTAGACTGTAGATGATCTCAATCCCTGTAT GGCTGTATCCATGTGTCCCACTTGAATTATGGACACATCAAAATGCCCTCATGAGCATAGAAGCAAAGTACACCCCCTCT CTACATACACACACTGGGGAGGGTGCAAGGAGTTAATCATGACCATCAGTGTTACATGGATGATCAAGATTCAATTTAAG TAAAATCAATCTTGATATAATTAATGGTAAACTGAATGGTTTAGATTAGCTCTTCTGACCTATAAGCTCTCACCCAATAC ACTTCTTGTGTCTCTGTGATTGTTTCGTCTATTCTCTTCTCTTATGGAACAATATTTTTAACTGTTTAACTATTGTACTT CCCCAATTATAAAAAACTTTGTGCATCCTTTTCACATGGACATGCTCCTTGACCTCCATGATGTTCAAATAGCTTCTTCT CTCATGATGATTTTTCTCTTGTTTTATAGACTTTGCAAGATACAGCAAAGCTGGAAGTTGATAAAATGATGCTTACAGAT GCACCGCTCTTATTTCCTCCTGGGCAGGTATTCTCAGATTTTGAAACTCCGTTGTAGCTTTGAGTCTCCATTATGATGAG GCAATCAAAGAACTTCTGTTTTCTGCCTTATCTTGACCAATGATTTTAAAACAGGAAATTTGATCATTCATGGTTAATGA AATTCAATTTATCAGCTGAAACATATAGTTCACGTCATTATTCACAACCTATGGTATATATATCAAAAAGGAGAATTATA ATAATATAATTTAGGAAATCCCAGTGAAGATGTTTCTATTTATCGGGTAATGGACAAATTTTGGAAGAGGGGACAACCAT AAATGACTTTTTTTGTAAATGAGTTGACACTTGACAATTATTATTAAATAATTTTATTTCAGTTAGTTGTTTCAAAATTG GAAATATTGTCTCCAGGGTTCCTAAATCATAAGACAAGCATAAGCATAGGCTACACTTCATGATCAATGATTATTGATTT GTAACTAAGTATTTTCCAGTCAATCGAATTTCACTCTTCTAGCTAGATTTTCTTTAGACCACTTTGCTTCAAAATATAAC TACCAGTTTGTGTCTTTTGATGCAGTTGGCCTTGGCTGCATTGCGCAACTCAAATGCACTCCATAAAGTTGTTGACTTTG ATAGGTACTTATTTTGTTGCATGTTTCTCTGCGACCCAAATTTTTTCCTTGTGTTGTTACATAGTGCATATTCTTTGACC CAAATCAATGTATCTGCTGAGATGTTCACTCTTACTGTGACACTTAATTGCAGTTATCTGAGGAGCATTTTTTCCCGTCA GAACTCCATGCATACGATGTCTGAGCTTATAGAATCATTCAATGCAATAGATTCTTGGGTAATTGTTTCTCATCCAAATG GTTGTCGTTAAACTGAATGATTGATGCGTGATTCCAAATTACATTTTGTAGTTGGTAATGTGGATTTTTCCTGTTTTACA TGGACTGTTGTGGCCTTGGTTACGTGCGCAGGTTAGAAAATACAAAACTCCTTCAGAGAAGGAATTAAAGCACATCAATA GGAAACTGAAGTCTTGTTGGGGTCATGGGTCTCACGACGAGTACTTCCTTTATCCTTTTGTAGAATTTCCTGCTGGCCCT TCATATCCAGCCCCTCTACACCAAAAAATGTTTGGGAGAAAATTTCATGTTGTTTACTTATTTTGGTTTGCTTTGCAGGA GCAAGAAGCGCGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCACATGAAGCACAAAATGTGCCATCTCATGTTTAG CTTTGTATTCTTTTCAAATGAGCCACTCATCATCTTAGAGTTTTGGATGGGAATTTTTGTTTTGTTTCTGTTCATCCTCG TCTGGATGCAGGAGTGTTAATGACTGATGAGCGAGGAAACTTTTGAGTTTTATTCAGTGATGTTCTGTCTGTTACTTCCC TTTTCTTATTATCCTCAAATAGAAATACTTAATTGTGCAAAAACACTGAACAAAATGGACACGAAGAAGTCCCGTGTTAT TTGTAAGATGAAATTTAGTCTCACCTTTGCTCTTGATTCTGCTTATGTGCAGGATTTTTTGTAGTCTTTTTTTTCTTTCT GTTAGCGTTCTTTAAAGTGTATCAATTCACTGCTAAGTACACATTAAATTCCTTAATTTAATTATTTCATGCACATTTTT TATAGAAAATAAATAAATTTCAATAACTAAAATCTAACTTTTTTTAGTTTGTAG
CDS sequence (LotjaGi5g1v0221600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTTTCTCACCTCTACCCACCGGGCCAAGTGGATCTTTTCTCCCCAGCAACTGGTTGAGAAATATAAAGCTGC TAACCAGAGGGCCAAGCAAATCCTAGAGAAGTGTGGTGCAACTCTGATGGACGTAGATATCGATGGGACATTGTCGTATC CTGAACCCCAGTTGACTTCAAAGGATAATGCTGAAAAGCATTCTCGAGTAAAACCTCTAAGTATTGAAGAAGAACAATGT ATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGCAACAATTTCCACTTCCCTCATAAAATTCAGGCAACAGCCCT CATCTATTTTAAAAGGTTCTATCTGCAATGGTCGGTGATGGAACATCAACCAAAAAATATAATGTTGACCTGTATATATG CTGCTTGTAAGATAGAAGAAAATCATGTATCAGCTGAGGAGCTTGGAAAGGGGATTTCACAGGATCATCAAATGATTCTC AATAATGAGATGATAGTCTATCAGAGTTTGGAATTTGATCTTATTGTTTATGCACCATATCGATCAGTTGAAGGTTTTAT GAATGATATGGAGGAATTTTGCAATGCTGGTGACGCCCAGCTTCAAATGCTCAAGACTTTGCAAGATACAGCAAAGCTGG AAGTTGATAAAATGATGCTTACAGATGCACCGCTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCATTGCGCAACTCA AATGCACTCCATAAAGTTGTTGACTTTGATAGTTATCTGAGGAGCATTTTTTCCCGTCAGAACTCCATGCATACGATGTC TGAGCTTATAGAATCATTCAATGCAATAGATTCTTGGGTTAGAAAATACAAAACTCCTTCAGAGAAGGAATTAAAGCACA TCAATAGGAAACTGAAGTCTTGTTGGGGTCATGGGTCTCACGACGAGAGCAAGAAGCGCGAGAAGAAATCAAAGCACAAG TCCAAAAAGAGCTCACATGAAGCACAAAATGTGCCATCTCATGTTTAG
Protein sequence (LotjaGi5g1v0221600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADFLTSTHRAKWIFSPQQLVEKYKAANQRAKQILEKCGATLMDVDIDGTLSYPEPQLTSKDNAEKHSRVKPLSIEEEQC IKVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMIL NNEMIVYQSLEFDLIVYAPYRSVEGFMNDMEEFCNAGDAQLQMLKTLQDTAKLEVDKMMLTDAPLLFPPGQLALAALRNS NALHKVVDFDSYLRSIFSRQNSMHTMSELIESFNAIDSWVRKYKTPSEKELKHINRKLKSCWGHGSHDESKKREKKSKHK SKKSSHEAQNVPSHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 325 | 324 | 3.7E-101 | ||
| PANTHER | 2 | 325 | 324 | 3.7E-101 | – | |
| Gene3D | 60 | 301 | 242 | 2.8E-63 | – | |
| SUPERFAMILY | 65 | 176 | 112 | 3.03E-31 | ||
| SMART | 87 | 168 | 82 | 6.9E-15 | ||
| Pfam | 89 | 174 | 86 | 5.0E-12 | ||
| CDD | 89 | 167 | 79 | 6.32902E-13 | ||
| Pfam | 179 | 298 | 120 | 6.8E-11 | ||
| SUPERFAMILY | 179 | 304 | 126 | 4.68E-27 | ||
| Gene3D | 179 | 284 | 106 | 2.8E-63 | – | |
| MobiDBLite | 296 | 335 | 40 | - | – | |
| MobiDBLite | 296 | 312 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0221600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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