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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0221600 |
| Transcript ID | LotjaGi5g1v0221600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-H1-1; TAIR: AT5G27620.1 cyclin H;1; Swiss-Prot: sp|Q8W5S1|CCH11_ARATH Cyclin-H1-1; TrEMBL-Plants: tr|I3SRL2|I3SRL2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0221600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52838084..52840715) extracted from Lotus japonicus Gifu genome v1.2.
ACCTCATCAAAGCTAGTATTTGATTTGTACGATTTATTTATGTTTTAAAAAGGTTTTATTTACTTGTTAGCTTCTCATTA ACTCCTTGAACATCTTACACAGGTTGACCTGTATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCAGCTGAGGAG CTTGGAAAGGGGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTCTATCAGGCATGGATAGGCCTCAA ATTTCAAATTTGTATGTCTTTTTAAAAAAAAAAGATCAATGACATGAAACCCTTGTTTTGCAGAGTTTGGAATTTGATCT TATTGTTTATGCACCATATCGATCAGTTGAAGGTTTTATGAATGATATGGAGGTTTGTCTGGTTGGCCTATTGTGGAATT TTTGAAATATTTAATTTATAATTTCATTTTTCTGTATCTCGAAATTAATTTCCAGCTTTCTCCCACTTTCATTTGGATAA GTAAATATATGACTTGTCTTCTATTAACATTACATTTTTTAATGACTTCATCTTATAGGAATTTTGCAATGCTGGTGACG CCCAGCTTCAAATGCTCAAGGTACTTATTGCCCAACATAATTGTTGTTTGGCTGATCACATTGTTTTGGCTTTGGCTAGA TGAAGTTTTTCGGCTTATTATTTTATATGTTGGCGATTTCTCCAGTGCCCCTCATTTTTTCCCCTGATAATTTGTGGTTA TTATTTTTCCAAGATTGAGAACAGAAACCATGCACAGTCTAAGGCATTAGAATTGTTTTATTCTATGACTGAAAATAATT GTGAATATAGACAAACTAAATTGCACGTGGTGCAGTTTCTTTCTAGACTGTAGATGATCTCAATCCCTGTATGGCTGTAT CCATGTGTCCCACTTGAATTATGGACACATCAAAATGCCCTCATGAGCATAGAAGCAAAGTACACCCCCTCTCTACATAC ACACACTGGGGAGGGTGCAAGGAGTTAATCATGACCATCAGTGTTACATGGATGATCAAGATTCAATTTAAGTAAAATCA ATCTTGATATAATTAATGGTAAACTGAATGGTTTAGATTAGCTCTTCTGACCTATAAGCTCTCACCCAATACACTTCTTG TGTCTCTGTGATTGTTTCGTCTATTCTCTTCTCTTATGGAACAATATTTTTAACTGTTTAACTATTGTACTTCCCCAATT ATAAAAAACTTTGTGCATCCTTTTCACATGGACATGCTCCTTGACCTCCATGATGTTCAAATAGCTTCTTCTCTCATGAT GATTTTTCTCTTGTTTTATAGACTTTGCAAGATACAGCAAAGCTGGAAGTTGATAAAATGATGCTTACAGATGCACCGCT CTTATTTCCTCCTGGGCAGGTATTCTCAGATTTTGAAACTCCGTTGTAGCTTTGAGTCTCCATTATGATGAGGCAATCAA AGAACTTCTGTTTTCTGCCTTATCTTGACCAATGATTTTAAAACAGGAAATTTGATCATTCATGGTTAATGAAATTCAAT TTATCAGCTGAAACATATAGTTCACGTCATTATTCACAACCTATGGTATATATATCAAAAAGGAGAATTATAATAATATA ATTTAGGAAATCCCAGTGAAGATGTTTCTATTTATCGGGTAATGGACAAATTTTGGAAGAGGGGACAACCATAAATGACT TTTTTTGTAAATGAGTTGACACTTGACAATTATTATTAAATAATTTTATTTCAGTTAGTTGTTTCAAAATTGGAAATATT GTCTCCAGGGTTCCTAAATCATAAGACAAGCATAAGCATAGGCTACACTTCATGATCAATGATTATTGATTTGTAACTAA GTATTTTCCAGTCAATCGAATTTCACTCTTCTAGCTAGATTTTCTTTAGACCACTTTGCTTCAAAATATAACTACCAGTT TGTGTCTTTTGATGCAGTTGGCCTTGGCTGCATTGCGCAACTCAAATGCACTCCATAAAGTTGTTGACTTTGATAGGTAC TTATTTTGTTGCATGTTTCTCTGCGACCCAAATTTTTTCCTTGTGTTGTTACATAGTGCATATTCTTTGACCCAAATCAA TGTATCTGCTGAGATGTTCACTCTTACTGTGACACTTAATTGCAGTTATCTGAGGAGCATTTTTTCCCGTCAGAACTCCA TGCATACGATGTCTGAGCTTATAGAATCATTCAATGCAATAGATTCTTGGGTAATTGTTTCTCATCCAAATGGTTGTCGT TAAACTGAATGATTGATGCGTGATTCCAAATTACATTTTGTAGTTGGTAATGTGGATTTTTCCTGTTTTACATGGACTGT TGTGGCCTTGGTTACGTGCGCAGGTTAGAAAATACAAAACTCCTTCAGAGAAGGAATTAAAGCACATCAATAGGAAACTG AAGTCTTGTTGGGGTCATGGGTCTCACGACGAGTACTTCCTTTATCCTTTTGTAGAATTTCCTGCTGGCCCTTCATATCC AGCCCCTCTACACCAAAAAATGTTTGGGAGAAAATTTCATGTTGTTTACTTATTTTGGTTTGCTTTGCAGGAGCAAGAAG CGCGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCACATGAAGCACAAAATGTGCCATCTCATGTTTAG
CDS sequence (LotjaGi5g1v0221600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGATATGGAGGAATTTTGCAATGCTGGTGACGCCCAGCTTCAAATGCTCAAGACTTTGCAAGATACAGCAAAGCT GGAAGTTGATAAAATGATGCTTACAGATGCACCGCTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCATTGCGCAACT CAAATGCACTCCATAAAGTTGTTGACTTTGATAGTTATCTGAGGAGCATTTTTTCCCGTCAGAACTCCATGCATACGATG TCTGAGCTTATAGAATCATTCAATGCAATAGATTCTTGGGTTAGAAAATACAAAACTCCTTCAGAGAAGGAATTAAAGCA CATCAATAGGAAACTGAAGTCTTGTTGGGGTCATGGGTCTCACGACGAGAGCAAGAAGCGCGAGAAGAAATCAAAGCACA AGTCCAAAAAGAGCTCACATGAAGCACAAAATGTGCCATCTCATGTTTAG
Protein sequence (LotjaGi5g1v0221600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDMEEFCNAGDAQLQMLKTLQDTAKLEVDKMMLTDAPLLFPPGQLALAALRNSNALHKVVDFDSYLRSIFSRQNSMHTM SELIESFNAIDSWVRKYKTPSEKELKHINRKLKSCWGHGSHDESKKREKKSKHKSKKSSHEAQNVPSHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 96 | 96 | 1.5E-19 | – | |
| Pfam | 11 | 115 | 105 | 2.3E-7 | ||
| PANTHER | 15 | 139 | 125 | 5.1E-29 | – | |
| SUPERFAMILY | 15 | 118 | 104 | 7.14E-23 | ||
| PANTHER | 15 | 139 | 125 | 5.1E-29 | ||
| MobiDBLite | 115 | 149 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0221600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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