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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0222400 |
| Transcript ID | LotjaGi5g1v0222400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-CoA-binding domain-containing protein 4; TAIR: AT3G05420.1 acyl-CoA binding protein 4; Swiss-Prot: sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SL98|I3SL98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0222400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52937379..52938729) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGGAACTTCAATCAGTACGTGGTCAGCTTGCTGCTGAGCAGTCAAGGTGTTTCAAACTTGAGGTAAACATTAATTC TTCTGACAGCCTTCCTCTCTGGGTTTGTCAATAAAGTGTTTTTGAACACATACTATCATGACATTGAAAAGTAAGGACAG ACACTCAGACAGTGTCTAAAACGTGTGCCCTGATCTCTCCAGTTGACCCAACTCAAAATATGATTCAGACCCTGTCTGGT TACACCCCCAATATGTATTTTGGGGCACTTTTCCTTTCACGAAAAGTAATTTGGTTGCTATAAATTGTTTGGGTACAATT TACATTTGTGGTGGGTACTGGGTAGAATAACTTTTGGGAGAAATGAGATTTTTTCACTTTTCCCGTGAAAATAATTCATT TTAGGTGTGAGATCCACAAAATATAACTTTAGTATTTATATTTAAAGTAATTTTATCTTACCATCGAGATAAAAATTATT CTTTTAAACATTTTTACCCTATGATTTCCAAACACAAGTCATTCAACCAAATAGCATTATTTCAAAAATTATCTTTATAT TAATTCTAACAAAAGCTATTCTACTCAATTTTAAAATAAACAGGTCTGTTTTGTTAGAGGCAAAAGTCTGGAAGAAATCA CAGAACATATGTTGCCTAAACAAAAAAGTAGAGTGGTTTTGAAATTATAGTTAATCGCTTGGAGTGAATTGTTGACTCTC TAGTTCTACTTACCTACAGTTGAGAATTGCAAAGTCAGACAATTATCAACTGTAGGCAATGGAATGAAGTGATACATATT TCATCACTGATGTTGTGAGTGTGTGTGTGTGGCTAATGTAGCTGACTGAAGAAAAGTTATTAGGGAAACATAGTGCACCA CATCATGAACTAAGCTGTTCATAGTGAATTTCAAAATTTTCCATTATTTGCATAAAAAGTGCTTATTTAATATCTTCTAA TCGCACAAAATACGAATTATTCTATGGTCATTTTGGTGTAAGGGTGACATAATGAACCATATTTTCCTTTTAGAGAAATC ATTCTAATAAGATCCCTGTTTGTTATGTTTTGTCTGAGTCTGCTTCAAAAGTTTGGCATTTGTCTCTTCATATTATGGAT AAAGAATTTGAAATTTGCTTACTGAAGAGAATATTTGGATCATAGGTGGAAGTTGCTGAGTTAGGACAGAAACTCCAAAC AATTGGGACATTACAGAAGGAACTTGAACTCCTCCAACGGCAAAAAGCTGCATCTGAGCAGGCCGCCTTAAGTGCAAAAC AAAGGCAAGGTTCAGGCGGTGTATGGGGTTGGCTTGCCGGTACTCCCCCTAACCAGCAAGAGGAAGATTGA
CDS sequence (LotjaGi5g1v0222400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGAACTTCAATCAGTACGTGGTCAGCTTGCTGCTGAGCAGTCAAGGTGTTTCAAACTTGAGGTGGAAGTTGCTGA GTTAGGACAGAAACTCCAAACAATTGGGACATTACAGAAGGAACTTGAACTCCTCCAACGGCAAAAAGCTGCATCTGAGC AGGCCGCCTTAAGTGCAAAACAAAGGCAAGGTTCAGGCGGTGTATGGGGTTGGCTTGCCGGTACTCCCCCTAACCAGCAA GAGGAAGATTGA
Protein sequence (LotjaGi5g1v0222400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQELQSVRGQLAAEQSRCFKLEVEVAELGQKLQTIGTLQKELELLQRQKAASEQAALSAKQRQGSGGVWGWLAGTPPNQQ EED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 79 | 78 | 4.2E-36 | – | |
| PANTHER | 2 | 79 | 78 | 4.2E-36 | – | |
| Coils | 28 | 62 | 35 | - | – | |
| MobiDBLite | 56 | 83 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0222400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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