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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0222800 |
| Transcript ID | LotjaGi5g1v0222800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent DNA helicase Q-like SIM; TAIR: AT5G27680.1 RECQ helicase SIM; Swiss-Prot: sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM; TrEMBL-Plants: tr|G7I8P0|G7I8P0_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi5g1v0222800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52966463..52969608) extracted from Lotus japonicus Gifu genome v1.2.
GCTTAACACGTCGCATCTAAGCAGGGTTCATAAAGAGTTTCATGACAATACTTTAGAGGTATGGATCCGGAGCCTGAACA AAATATATGTCTACATTTCAATGTCTTCCAACCTGAGTACTGTCATTTTTTTTCTTTGGGGGGGGGGGGGGAGTACTGTC AAGTTTGTATAGCTGTGGTGTGCTATTCACATGACAGTTATTATGAAAATAGAGGACAAGGTCCATGGAACTCTTTCATT AAAAGGAATTGAATAATACCCATTCGCTTTTTTTCCTGATTTTGATAGCTCTTTTCAGTTTGTGACTAGTTTTCATACTT AATGCACCCCACTCCATGTTTTTTTTTTACTTCAGCTTTTTCAACCCTGCACAACCTGTTATACATCTAAGCTTTGGTGT TTCTTCGTAATTATTTGTTAAGACATGGCTTTGAAATGTGTTTTTTTTCCACCTTGTTTACCCCTATGTTGCCTGAAGAG TTCACTACATAATTTAAATTATTTCCTTATTCCAGAATCATCAACAGGTTTGACTAGAAACAGTTATGCTTTTGTGTTTT ACCATTTTCAGGTTGTAGTTGCAACAATAGCATTTGCAATGGGGATTGACAAATCGAATGTCAGAAGAATCATCCACTAT GGTTGGCCGCAGGTCTGTTTTTCAAATAATTTTTGCTGATATATTAATTAGATTTTAAGTTTGTCTTTTCTTGTGCATTC CATATTTTATGCTTTCACTTCCTGGATTGTCCATCTTTTTCTTTTGACATGCCTCAAATAATCAAATATGTAATTTGATC ATCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCATGTTGCAGTAAGTTCAAT TATACTATAATATAATTTTTTACATTGCGCATTTCTTTTGTTCTCGTCATTTTCTGTTGGATTTTAAATTCATGTTTATA CCTTTATGTTCACATAATTAGTAGGCTCCTTATTTTTTAATTCTTCTGAGACACTTATATCCTGTGTTTGTTCCCAATTT CACAACAAGTTCTATATGCAAACCTAGCAAGAAAGCCATCACTTTTGCCAAGTCGTAGAAGTGATGATCAGATAAAACAA GCATATATTTTGCTGTCTGATATTTTCAGGTTTGCTTTGATCAATACACCTTTATGTGTCTTTTCTTTTGTTTTATTTTA GTACAGAACCTTAATGTATATTTGTAGATATGGAATGAATACTTCACATTGTCGCGCAAAGACACTTGTTGAGTACTTTG GAGAAGATTTCAGTCAACAAAAATGTTGCTTGTACGTAGAGTTTGATCTCAAAGCCTTGCTTTCTTATTATGTTTAAGCA TCTGTTTAAGTGAAAAATTATTCTAATATATGAGAAGCTTGAGACCCTGTGTGTATTTCTAATTCAACCAATAGTTGATA CCGAATTACCTTTTTTTTGAAGCACTAACATACTTGTTTCCTCTTGTAATCATGGGATTATTTTTCGAGTCATTTATGAA CCTCCTTTCATGCAGATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTGTTTTAC TGCAAACAATATGTGTCCATAATGTATGTCAAACGGTTTCAATTTATACCAATTAAACTTGCATTTCTGTCTTGTGAATT TATAATTATATCCAAATATTGACCCGGTGGGTGCTAGTCACAATGGTTAAAGTGACTACTAGAACCACCAGATCAAAAGT TCGATCCTTAGGAGCTGCACTTTTGCCAATACCTTCAGCCTTCACCACACCCAGGTCGGAATTGTGAAAATGACTTGGTA CACCCAAAAAATATTGACCCTTGTATTTTCATGGCATTCTTTCCAAAAGTCCTCTTCCTACTCGTGTATTTTTTCTCTTT CTTGAGATTAAGTTTCAACATGATTAAATAAATGATCAAACAAAGGGTTTGAGAGCTCAAGTTTTGTGGAGGAATATTGT CACGGTCCATAGATTTGTATTTTCTATATTCCATAAGAGAAAAGAAACTGATGCAACATGAACGCTAATTTTTCAGGCTT CTAGCTACTCCTTGGATCCTTCATATAATGATGATATCCACTTTGGCTCCAAAAGTAGAAGGCTAGAAAAGAGACCCAGT CTTATGAAGTTAGTTAGAAATATAAGGAAGCAGGTGAACCTACATATAATTGTCATCTCTCACTGTTTGTTATGTACTCA TGTTGGGTATTCTATATTGTTGCTAATTCCTGTAACAATTTTTTGTTGTTTTCATATGTTGTGGCCATCTGCAGTTTCAA AAGTTTGTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAAGGAAGGAGA TGAGAAGGTATACTTGCTTTAACTAGATATAAGTTTAACCCATCCTTGTATATCAATATTGCAAAAGCCTGTTCACAAAT GTCATAATTGAAAAAGTGGGATTTGTTGCATCTGATGATTAAGAAATGATATATACATTTGAGAAGTGATCCTACAAAGG TAATTTAACATATAGACATAAACTGAGGATTGATAAAACATGTTTCTGCATTTAGTATTGAAGTAAGATTGAGCATTGGT AATTCCACTTTAATTTCATCTCAAGTTTTGCTCTATACAATTGCAGACCCATGTTCAGATAAAATACCCCGAGGTAACAG AACTGGGAATGGAATTTCTGAAGTGTGAGCAAGCTTTTTATGAGTACCTTGAGGCTGATATGTTGTTTGCCAAGAAAACT AACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAACGCTTGGAAGCAAT GCGACTTGATAGAAATCCAATGCAGCGAGTTAGAAAGCAACCAAAGAGGAAGGTTAATACACCTGATATAAAGACTTTAC TAACATCAAAACTTTCAAAACATAAGTGATATGTATCTCATCTTTTTTATTGAAGTATATAATTTACTCGTTGGCTCATA GAAGTAATTCATCCATGATGATCTTAATCTTATCATGATTAATAGTAAAATCATGAATGTGTTTTTAACTTTTTGTAAGA AAAAGAGGAACTGAGACACAACATAA
CDS sequence (LotjaGi5g1v0222800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTGTTTTACTGCAAAC AATATGTGTCCATAATGCTTCTAGCTACTCCTTGGATCCTTCATATAATGATGATATCCACTTTGGCTCCAAAAGTAGAA GGCTAGAAAAGAGACCCAGTCTTATGAAGTTAGTTAGAAATATAAGGAAGCAGTTTCAAAAGTTTGTAACCACTGATATA TTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAAGGAAGGAGATGAGAAGACCCATGTTCAGAT AAAATACCCCGAGGTAACAGAACTGGGAATGGAATTTCTGAAGTGTGAGCAAGCTTTTTATGAGTACCTTGAGGCTGATA TGTTGTTTGCCAAGAAAACTAACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGT CGCCAACGCTTGGAAGCAATGCGACTTGATAGAAATCCAATGCAGCGAGTTAGAAAGCAACCAAAGAGGAAGGTTAATAC ACCTGATATAAAGACTTTACTAACATCAAAACTTTCAAAACATAAGTGA
Protein sequence (LotjaGi5g1v0222800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQCDVCINGPPQRQNLKEEACVLLQTICVHNASSYSLDPSYNDDIHFGSKSRRLEKRPSLMKLVRNIRKQFQKFVTTDI LWWRGLARILEVKGYIKEGDEKTHVQIKYPEVTELGMEFLKCEQAFYEYLEADMLFAKKTNKPYSSFSEWGKGWADPEIR RQRLEAMRLDRNPMQRVRKQPKRKVNTPDIKTLLTSKLSKHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 142 | 142 | 1.8E-9 | ||
| PANTHER | 4 | 195 | 192 | 1.7E-51 | – | |
| PANTHER | 4 | 195 | 192 | 1.7E-51 | – | |
| MobiDBLite | 169 | 202 | 34 | - | – | |
| MobiDBLite | 169 | 186 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0222800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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