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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0229700 |
| Transcript ID | LotjaGi5g1v0229700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880; TrEMBL-Plants: tr|I3SPT3|I3SPT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0229700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53705564..53706924) extracted from Lotus japonicus Gifu genome v1.2.
AGGAATGGACTCTGAAAGCAGCATCCAGCAAAACAACAAGAGAAAGAGAGATCGTAGACAATGGTCTAATGATGAGGATG AAGCATTATTAGACATATTGATTGAAGCTGTTAACCAAGGTCAAAAGTATGAAAATGGACAATTCAAAGGAAATACTTTG AAAGCAGCTGAGGCTAAATTAGAGAAGAAGTTTCCTGGATGTGGTATTAAGGTGAAACCACATATTGAATCTGCAATGAA GAGGCTCAAGGGAGTTTATAATGTTGTTTATGATATGCTGAATCAAAGTGGATTTGGTTGGGATGATGAGAAGAAGATGA TTAAGGTGGATAGTGAAGATGTCTGGAATGAGTATATAAAGGTTTGTGTTTCTAATTTTTCCTCACTAATGAATTCTTTT CTTTGACAATATATTTGTGATAAATTAAATTATTTTCATTTTGTGTTGTTTTAGAGTCATCCAAATGCAAAAGATTATAG GAATGCACGAATTCCACTCCTTGAAAAGCTTGCTTATGCCTTTGGAAAAGACCGTGCTACTGGAAAATTAGCTTATTCAC CTGCAGATGTTGTTGAGGAATTGGATAAAGAAGAGGAAGAACAAGCTCATCATGATGATGTTAGAGTGGAGATGACCCCG ACATCATCTGTTAATAAATCACAATGCAGAAAAGATGACCTTGTGGAAAGTCAATCAAGGAAAAAAAACAGAGGAGCAAA TCTGATTGCTAATAGTATATCTGAATTAGGAAACACTCTTGGGAAATGGCTTGAATTAAGTGCTGAAAGATTGGCTGAGG CTAGTAATAGCCTCAAAGTTGATAAAGACATGTTTGATGATTCCAGGGGCGTCATGGATGAGCTGCTGAAAATGGGTTTA ACAGATCAAGAGCGTTATGCAGCTGGAGATAAAATAATGTCTATGCCTCATCGTGTGCACATGTTTTGGGCTTGTCATGG AGAGGATCGTCTCAAGTTTGTGAAATCATTGATATAATTGCTTTGGAGAATGACATATTGTTAGACAATGTTTATGTTAT TTTGCTTTGTTTATGTTGGCTTCTCTACTACATTCGGATAGTTCACCATTTTGTTGGATGTTTATGTTATTTGGCTTTGT GATGTTATTTCTAGGGTGGAGATGACATTGCTCCTCTATTACATTCGGATAATACACCATTTTGTTGGGCGGTGTTTATG CTATGTTACTTTATTTTGATGGAGGATGTTTATGATATTTATGTTATTTATAAGAAGCACATGATTCAACTTATCTATTA TATTTTCACTATTTTTGGTATCCTTATTTAATACCCATGGTTTTTCAAGTTTGGATGTGCCTTGGGGTGCTGATAATGCT G
CDS sequence (LotjaGi5g1v0229700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTGAAAGCAGCATCCAGCAAAACAACAAGAGAAAGAGAGATCGTAGACAATGGTCTAATGATGAGGATGAAGC ATTATTAGACATATTGATTGAAGCTGTTAACCAAGGTCAAAAGTATGAAAATGGACAATTCAAAGGAAATACTTTGAAAG CAGCTGAGGCTAAATTAGAGAAGAAGTTTCCTGGATGTGGTATTAAGGTGAAACCACATATTGAATCTGCAATGAAGAGG CTCAAGGGAGTTTATAATGTTGTTTATGATATGCTGAATCAAAGTGGATTTGGTTGGGATGATGAGAAGAAGATGATTAA GGTGGATAGTGAAGATGTCTGGAATGAGTATATAAAGAGTCATCCAAATGCAAAAGATTATAGGAATGCACGAATTCCAC TCCTTGAAAAGCTTGCTTATGCCTTTGGAAAAGACCGTGCTACTGGAAAATTAGCTTATTCACCTGCAGATGTTGTTGAG GAATTGGATAAAGAAGAGGAAGAACAAGCTCATCATGATGATGTTAGAGTGGAGATGACCCCGACATCATCTGTTAATAA ATCACAATGCAGAAAAGATGACCTTGTGGAAAGTCAATCAAGGAAAAAAAACAGAGGAGCAAATCTGATTGCTAATAGTA TATCTGAATTAGGAAACACTCTTGGGAAATGGCTTGAATTAAGTGCTGAAAGATTGGCTGAGGCTAGTAATAGCCTCAAA GTTGATAAAGACATGTTTGATGATTCCAGGGGCGTCATGGATGAGCTGCTGAAAATGGGTTTAACAGATCAAGAGCGTTA TGCAGCTGGAGATAAAATAATGTCTATGCCTCATCGTGTGCACATGTTTTGGGCTTGTCATGGAGAGGATCGTCTCAAGT TTGTGAAATCATTGATATAA
Protein sequence (LotjaGi5g1v0229700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSESSIQQNNKRKRDRRQWSNDEDEALLDILIEAVNQGQKYENGQFKGNTLKAAEAKLEKKFPGCGIKVKPHIESAMKR LKGVYNVVYDMLNQSGFGWDDEKKMIKVDSEDVWNEYIKSHPNAKDYRNARIPLLEKLAYAFGKDRATGKLAYSPADVVE ELDKEEEEQAHHDDVRVEMTPTSSVNKSQCRKDDLVESQSRKKNRGANLIANSISELGNTLGKWLELSAERLAEASNSLK VDKDMFDDSRGVMDELLKMGLTDQERYAAGDKIMSMPHRVHMFWACHGEDRLKFVKSLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 291 | 288 | 4.4E-61 | – | |
| PANTHER | 4 | 291 | 288 | 4.4E-61 | – | |
| MobiDBLite | 7 | 21 | 15 | - | – | |
| Pfam | 19 | 117 | 99 | 3.3E-15 | ||
| MobiDBLite | 165 | 202 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0229700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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